Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30496 * 125.65206 * 2 1 4 4 C 1.34129 * 109.25493 * 180.29435 * 3 2 1 5 5 C 1.34667 * 108.02332 * 359.72654 * 4 3 2 6 6 N 1.35052 * 125.64831 * 179.82864 * 2 1 3 7 7 C 1.46499 * 126.39480 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47405 * 84.71482 * 7 6 2 9 9 O 1.21293 * 119.99625 * 359.72422 * 8 7 6 10 10 N 1.34771 * 119.99985 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99993 * 359.72094 * 10 8 7 12 12 H 1.07998 * 120.00242 * 326.00986 * 11 10 8 13 13 C 1.38945 * 119.99852 * 146.01697 * 11 10 8 14 14 N 1.31412 * 120.00160 * 337.80886 * 13 11 10 15 15 Si 1.86807 * 120.00186 * 157.81046 * 13 11 10 16 16 H 1.48498 * 109.47005 * 59.99845 * 15 13 11 17 17 H 1.48501 * 109.47162 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46941 * 300.00114 * 15 13 11 19 19 C 1.46502 * 119.99893 * 179.72542 * 10 8 7 20 20 C 1.53001 * 109.47256 * 84.53569 * 19 10 8 21 21 C 1.50700 * 109.47166 * 179.97438 * 20 19 10 22 22 O 1.20825 * 119.99741 * 0.02562 * 21 20 19 23 23 O 1.34228 * 119.99922 * 179.97438 * 21 20 19 24 24 H 1.09004 * 109.46875 * 270.17446 * 1 2 3 25 25 H 1.08998 * 109.46926 * 30.17242 * 1 2 3 26 26 H 1.08999 * 109.47058 * 150.17000 * 1 2 3 27 27 H 1.08000 * 125.98741 * 179.73012 * 4 3 2 28 28 H 1.08000 * 126.59210 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.47034 * 324.70926 * 7 6 2 30 30 H 1.09004 * 109.46451 * 204.71530 * 7 6 2 31 31 H 0.97007 * 120.00215 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.46953 * 204.53423 * 19 10 8 33 33 H 1.09001 * 109.47123 * 324.53948 * 19 10 8 34 34 H 1.09000 * 109.47040 * 300.00346 * 20 19 10 35 35 H 1.09002 * 109.47142 * 59.99791 * 20 19 10 36 36 H 0.96702 * 117.00195 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6817 -0.0065 5 6 3.5926 -0.6644 -0.0046 6 7 2.2941 -1.0974 0.0033 7 6 1.8424 -2.4911 0.0080 8 6 1.5625 -2.9332 -1.4052 9 8 1.7196 -2.1587 -2.3253 10 7 1.1329 -4.1877 -1.6462 11 6 0.9559 -5.0633 -0.6062 12 1 1.6091 -5.0206 0.2528 13 6 -0.0638 -6.0057 -0.6574 14 7 -1.1025 -5.8082 -1.4379 15 14 0.0416 -7.5535 0.3832 16 1 0.1139 -7.1808 1.8188 17 1 -1.1628 -8.3901 0.1495 18 1 1.2574 -8.3197 0.0089 19 6 0.8550 -4.6157 -3.0195 20 6 2.1539 -5.0795 -3.6818 21 6 1.8679 -5.5203 -5.0943 22 8 0.7410 -5.4683 -5.5269 23 8 2.8654 -5.9697 -5.8720 24 1 -0.3633 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5112 27 1 4.4098 1.3409 -0.0122 28 1 4.4776 -1.2833 -0.0089 29 1 0.9327 -2.5761 0.6023 30 1 2.6187 -3.1230 0.4395 31 1 -1.8142 -6.4664 -1.4739 32 1 0.1401 -5.4384 -3.0060 33 1 0.4379 -3.7809 -3.5828 34 1 2.8688 -4.2568 -3.6952 35 1 2.5711 -5.9142 -3.1185 36 1 2.6333 -6.2408 -6.7708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600754913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -61.357003 kcal Electronic energy + Delta-G solvation = -22302.940013 eV Core-core repulsion = 18788.664637 eV Total energy + Delta-G solvation = -3514.275376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62314 -39.92349 -38.70501 -35.91292 -35.22320 -33.38059 -32.14919 -31.27927 -30.87459 -27.45841 -26.27924 -25.42089 -23.79887 -21.03706 -20.72339 -19.71733 -19.12709 -17.91156 -17.34420 -16.67512 -16.21052 -15.92742 -15.56651 -14.91064 -14.59645 -14.48260 -14.09050 -13.78025 -13.14489 -12.95395 -12.91305 -12.65675 -12.53863 -12.24693 -12.05941 -11.88515 -11.57789 -11.45242 -11.24051 -11.15611 -10.94422 -10.61960 -10.28826 -10.19765 -9.61178 -9.54661 -9.30741 -8.59689 -7.89360 -7.85867 -6.64945 -4.37100 2.49050 2.57823 2.94270 3.06446 3.07510 3.21368 3.32558 3.55116 3.59661 3.90503 4.54902 4.69970 4.94567 5.23390 5.29901 5.48740 5.64367 5.69813 5.71256 5.75599 5.86057 5.88208 5.98497 6.19661 6.21482 6.25040 6.66499 6.75282 6.80795 7.08198 7.20386 7.22301 7.55453 7.64054 8.03884 8.21724 8.56266 8.76908 9.13186 9.56726 10.35632 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.006268 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.046465 B = 4466.333738 C = 5810.937459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.220 3.780 3 N -0.504 5.504 4 C -0.038 4.038 5 C -0.052 4.052 6 N -0.431 5.431 7 C 0.101 3.899 8 C 0.450 3.550 9 O -0.585 6.585 10 N -0.428 5.428 11 C -0.364 4.364 12 H 0.094 0.906 13 C 0.050 3.950 14 N -0.843 5.843 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.270 1.270 19 C 0.127 3.873 20 C -0.126 4.126 21 C 0.483 3.517 22 O -0.513 6.513 23 O -0.524 6.524 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.276 0.724 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -0.584 1.542 5.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 N -0.224 5.224 4 C -0.186 4.186 5 C -0.186 4.186 6 N -0.112 5.112 7 C -0.025 4.025 8 C 0.237 3.763 9 O -0.470 6.470 10 N -0.147 5.147 11 C -0.491 4.491 12 H 0.112 0.888 13 C -0.159 4.159 14 N -0.478 5.478 15 Si 0.740 3.260 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.196 1.196 19 C 0.003 3.997 20 C -0.165 4.165 21 C 0.326 3.674 22 O -0.401 6.401 23 O -0.336 6.336 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.845 0.472 1.323 5.045 hybrid contribution 0.332 -2.093 -0.180 2.127 sum 5.177 -1.621 1.144 5.544 Atomic orbital electron populations 1.20149 0.85453 1.04258 1.02773 1.23111 0.95529 0.81330 1.04283 1.70168 1.02200 1.28424 1.21595 1.22080 0.94716 0.92611 1.09227 1.22540 0.87122 0.96694 1.12272 1.45025 1.06353 1.06995 1.52814 1.21589 1.03231 0.79177 0.98491 1.20413 0.83523 0.82523 0.89802 1.90639 1.57931 1.53059 1.45346 1.43377 1.57126 1.08335 1.05841 1.19406 1.15054 1.14138 1.00478 0.88824 1.25386 0.93327 0.99826 0.97328 1.69915 1.05976 1.34541 1.37320 0.86193 0.78202 0.81381 0.80182 1.19455 1.20651 1.19564 1.21233 0.93746 1.02678 0.81996 1.21838 1.03535 1.03302 0.87780 1.23710 0.82209 0.72873 0.88656 1.90710 1.23607 1.50995 1.74761 1.84583 1.42663 1.76965 1.29368 0.90655 0.89655 0.90446 0.81953 0.81588 0.86501 0.87344 0.91329 0.86225 0.91637 0.88391 0.87784 0.74014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.04 36.01 0.36 -0.72 16 2 C 0.22 4.16 7.88 -155.41 -1.22 2.93 16 3 N -0.50 -9.83 11.25 -10.81 -0.12 -9.95 16 4 C -0.04 -0.66 11.87 -17.81 -0.21 -0.87 16 5 C -0.05 -0.88 11.58 -16.56 -0.19 -1.07 16 6 N -0.43 -7.88 2.25 -115.19 -0.26 -8.14 16 7 C 0.10 1.80 4.82 -5.19 -0.03 1.77 16 8 C 0.45 9.80 7.67 -10.99 -0.08 9.72 16 9 O -0.59 -14.54 16.08 5.55 0.09 -14.45 16 10 N -0.43 -9.54 2.56 -114.81 -0.29 -9.84 16 11 C -0.36 -7.96 8.70 -14.94 -0.13 -8.09 16 12 H 0.09 1.87 6.97 -52.49 -0.37 1.51 16 13 C 0.05 1.13 4.92 -17.47 -0.09 1.04 16 14 N -0.84 -20.46 11.34 55.50 0.63 -19.84 16 15 Si 0.91 17.39 29.61 -169.99 -5.03 12.36 16 16 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 19 C 0.13 2.85 4.19 -4.04 -0.02 2.84 16 20 C -0.13 -2.35 6.10 -27.88 -0.17 -2.52 16 21 C 0.48 8.58 8.33 36.01 0.30 8.88 16 22 O -0.51 -10.65 16.74 -18.75 -0.31 -10.97 16 23 O -0.52 -7.24 13.42 -39.25 -0.53 -7.77 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.33 7.84 -51.93 -0.41 0.92 16 27 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.12 1.98 7.90 -51.93 -0.41 1.57 16 30 H 0.11 1.68 7.63 -51.93 -0.40 1.28 16 31 H 0.28 6.39 8.31 -40.82 -0.34 6.06 16 32 H 0.12 2.91 5.31 -51.93 -0.28 2.64 16 33 H 0.07 1.61 7.55 -51.93 -0.39 1.21 16 34 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 36 H 0.40 3.62 9.10 45.56 0.41 4.04 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -31.16 319.94 -5.99 -37.15 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -3.50 Total: 12.71 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: -1.48 Total: 13.91 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.04 Total: -47.77 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.75 Total: -33.19 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.16 -5.99 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600754913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.206 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds