Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30310 * 125.91302 * 2 1 4 4 N 1.39897 * 109.20820 * 179.79717 * 3 2 1 5 5 C 1.46497 * 125.74448 * 180.27122 * 4 3 2 6 6 C 1.34769 * 108.50766 * 0.39602 * 4 3 2 7 7 N 1.38491 * 126.42503 * 179.88468 * 6 4 3 8 8 C 1.34780 * 120.00027 * 330.15034 * 7 6 4 9 9 O 1.21267 * 119.99961 * 354.16137 * 8 7 6 10 10 C 1.50700 * 119.99679 * 173.88435 * 8 7 6 11 11 H 1.09007 * 109.47036 * 299.99743 * 10 8 7 12 12 C 1.52997 * 109.47377 * 60.00180 * 10 8 7 13 13 C 1.50702 * 109.46855 * 180.02562 * 10 8 7 14 14 H 1.07994 * 119.99873 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99802 * 179.97438 * 13 10 8 16 16 N 1.31517 * 120.00192 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00018 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47301 * 89.99885 * 17 15 13 19 19 H 1.48499 * 109.47261 * 210.00166 * 17 15 13 20 20 H 1.48504 * 109.47302 * 330.00023 * 17 15 13 21 21 C 1.39221 * 107.13982 * 359.61315 * 6 4 3 22 22 C 1.46749 * 126.51750 * 180.24397 * 21 6 4 23 23 O 1.21588 * 120.00252 * 89.99782 * 22 21 6 24 24 O 1.34836 * 120.00058 * 270.00829 * 22 21 6 25 25 H 1.08997 * 109.46965 * 269.96289 * 1 2 3 26 26 H 1.08991 * 109.47036 * 29.96256 * 1 2 3 27 27 H 1.09000 * 109.46741 * 149.95996 * 1 2 3 28 28 H 1.09003 * 109.46863 * 272.85771 * 5 4 3 29 29 H 1.09002 * 109.46907 * 32.85154 * 5 4 3 30 30 H 1.08998 * 109.47073 * 152.85486 * 5 4 3 31 31 H 0.96999 * 119.99582 * 150.15958 * 7 6 4 32 32 H 1.08998 * 109.47377 * 179.97438 * 12 10 8 33 33 H 1.08999 * 109.47038 * 300.00290 * 12 10 8 34 34 H 1.08998 * 109.47112 * 59.99746 * 12 10 8 35 35 H 0.97000 * 120.00015 * 179.97438 * 16 15 13 36 36 H 0.96695 * 117.00014 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2714 1.0554 0.0000 4 7 3.6114 0.6533 0.0047 5 6 4.7728 1.5461 0.0118 6 6 3.6538 -0.6937 -0.0012 7 7 4.7935 -1.4806 -0.0015 8 6 5.9249 -1.0277 -0.5772 9 8 5.9175 0.0207 -1.1866 10 6 7.2005 -1.8213 -0.4584 11 1 7.4650 -1.9285 0.5937 12 6 6.9994 -3.2059 -1.0774 13 6 8.3087 -1.1024 -1.1837 14 1 8.1091 -0.1649 -1.6813 15 6 9.5773 -1.6415 -1.2120 16 7 9.8205 -2.7829 -0.6056 17 14 10.9508 -0.7507 -2.1117 18 1 11.6351 0.1774 -1.1759 19 1 11.9282 -1.7420 -2.6288 20 1 10.3812 0.0206 -3.2456 21 6 2.3370 -1.1457 -0.0007 22 6 1.8939 -2.5447 -0.0009 23 8 1.7109 -3.1247 1.0520 24 8 1.6899 -3.1871 -1.1687 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3633 0.8902 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0339 1.8107 -1.0129 29 1 4.5323 2.4506 0.5705 30 1 5.6162 1.0414 0.4830 31 1 4.7773 -2.3576 0.4125 32 1 7.9222 -3.7797 -0.9918 33 1 6.1979 -3.7256 -0.5525 34 1 6.7349 -3.0987 -2.1294 35 1 10.7129 -3.1623 -0.6258 36 1 1.3988 -4.1078 -1.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600773285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -43.862042 kcal Electronic energy + Delta-G solvation = -22432.775817 eV Core-core repulsion = 18919.259080 eV Total energy + Delta-G solvation = -3513.516737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68462 -39.72276 -39.13857 -35.92543 -34.81451 -34.24803 -33.52091 -30.87583 -29.73094 -29.15322 -26.00392 -25.34492 -23.90307 -22.90402 -20.83000 -20.48029 -18.92111 -18.17978 -17.62536 -16.76093 -16.60000 -16.03910 -15.87622 -15.22188 -14.68577 -14.53652 -14.26366 -13.53212 -13.45642 -13.20759 -13.17003 -12.78847 -12.64946 -12.29145 -12.10536 -11.60841 -11.48936 -11.16044 -11.09861 -10.93936 -10.86419 -10.58256 -10.47657 -10.24234 -10.15163 -9.21706 -9.07678 -8.80568 -8.54131 -8.17908 -6.21409 -4.27032 1.70780 2.12954 2.27038 2.40029 3.14877 3.21679 3.23239 3.30040 3.36723 3.47152 4.31439 4.51435 4.87492 5.12368 5.25897 5.33062 5.48641 5.52521 5.59010 5.66222 5.71374 5.84415 6.03009 6.11052 6.38860 6.45641 6.54462 6.58011 6.65804 7.01900 7.20971 7.37365 7.58915 7.76341 7.85932 7.95928 8.05201 8.55300 8.81167 9.39760 10.86011 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.004890 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.794258 B = 5725.130235 C = 6534.503295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.132 3.868 3 N -0.294 5.294 4 N -0.349 5.349 5 C 0.115 3.885 6 C 0.390 3.610 7 N -0.662 5.662 8 C 0.514 3.486 9 O -0.512 6.512 10 C 0.035 3.965 11 H 0.061 0.939 12 C -0.137 4.137 13 C -0.510 4.510 14 H 0.076 0.924 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.325 4.325 22 C 0.577 3.423 23 O -0.511 6.511 24 O -0.508 6.508 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.424 0.576 32 H 0.099 0.901 33 H 0.013 0.987 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 0.825 1.634 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.036 4.036 3 N -0.116 5.116 4 N -0.132 5.132 5 C -0.024 4.024 6 C 0.162 3.838 7 N -0.313 5.313 8 C 0.306 3.694 9 O -0.384 6.384 10 C 0.014 3.986 11 H 0.079 0.921 12 C -0.195 4.195 13 C -0.548 4.548 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.341 4.341 22 C 0.419 3.581 23 O -0.398 6.398 24 O -0.318 6.318 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.263 0.737 32 H 0.117 0.883 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.478 3.086 1.479 13.905 hybrid contribution 0.730 -1.576 -0.212 1.750 sum -12.748 1.510 1.267 12.900 Atomic orbital electron populations 1.20242 0.86034 1.03618 1.03402 1.21978 0.96560 0.88116 0.96902 1.77068 0.85179 1.21608 1.27791 1.48334 1.06326 1.02736 1.55754 1.22302 0.82883 0.92250 1.04996 1.18037 0.87302 0.83593 0.94885 1.43701 1.08591 1.20406 1.58620 1.22693 0.84511 0.86236 0.75911 1.90633 1.85097 1.23446 1.39229 1.18969 0.86794 0.92919 0.99887 0.92139 1.21802 1.01883 0.97300 0.98483 1.21044 0.92121 1.07674 1.33948 0.90576 1.24940 0.98704 0.94976 0.95334 1.69854 1.21840 1.18135 1.43232 0.86399 0.81197 0.79307 0.80025 1.20539 1.21146 1.19682 1.18248 0.91054 0.91226 1.33593 1.19672 0.72256 0.85532 0.80669 1.90899 1.47776 1.68062 1.33083 1.84781 1.79976 1.31513 1.35570 0.89944 0.90088 0.90567 0.88383 0.90784 0.89094 0.73704 0.88256 0.96791 0.94504 0.92637 0.73516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.28 36.01 0.37 -0.41 16 2 C 0.13 1.99 7.26 -82.00 -0.60 1.40 16 3 N -0.29 -4.92 12.47 33.91 0.42 -4.49 16 4 N -0.35 -6.12 3.94 -66.73 -0.26 -6.39 16 5 C 0.12 1.87 9.21 59.85 0.55 2.42 16 6 C 0.39 6.88 7.34 -153.42 -1.13 5.76 16 7 N -0.66 -11.52 5.27 -11.08 -0.06 -11.57 16 8 C 0.51 10.50 6.09 -10.98 -0.07 10.44 16 9 O -0.51 -11.30 10.49 5.57 0.06 -11.24 16 10 C 0.04 0.80 2.65 -92.92 -0.25 0.55 16 11 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.14 -2.90 8.87 37.16 0.33 -2.57 16 13 C -0.51 -13.19 8.37 -34.44 -0.29 -13.48 16 14 H 0.08 2.05 6.75 -52.49 -0.35 1.70 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -23.54 11.32 55.43 0.63 -22.91 16 17 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.32 -5.29 6.02 -104.86 -0.63 -5.93 16 22 C 0.58 8.52 7.83 34.17 0.27 8.79 16 23 O -0.51 -8.38 17.90 -19.33 -0.35 -8.72 16 24 O -0.51 -6.09 13.44 -40.86 -0.55 -6.64 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 28 H 0.10 1.69 6.89 -51.93 -0.36 1.33 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.56 6.11 -51.93 -0.32 1.24 16 31 H 0.42 6.54 8.08 -40.82 -0.33 6.21 16 32 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 33 H 0.01 0.24 7.44 -51.93 -0.39 -0.15 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.41 2.74 9.11 45.56 0.42 3.15 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -31.07 312.40 -5.26 -36.33 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.31 Total: 6.92 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.53 Total: 8.48 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.73 Total: -45.36 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.84 Total: -26.60 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.07 -5.26 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.532 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds