Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30310 * 125.91302 * 2 1 4 4 N 1.39897 * 109.20820 * 179.79717 * 3 2 1 5 5 C 1.46497 * 125.74448 * 180.27122 * 4 3 2 6 6 C 1.34769 * 108.50766 * 0.39602 * 4 3 2 7 7 N 1.38491 * 126.42503 * 179.88468 * 6 4 3 8 8 C 1.34780 * 120.00027 * 330.15034 * 7 6 4 9 9 O 1.21267 * 119.99961 * 354.16137 * 8 7 6 10 10 C 1.50700 * 119.99679 * 173.88435 * 8 7 6 11 11 H 1.09007 * 109.47036 * 299.99743 * 10 8 7 12 12 C 1.52997 * 109.47377 * 60.00180 * 10 8 7 13 13 C 1.50702 * 109.46855 * 180.02562 * 10 8 7 14 14 H 1.07994 * 119.99873 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99802 * 179.97438 * 13 10 8 16 16 N 1.31517 * 120.00192 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00018 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47301 * 89.99885 * 17 15 13 19 19 H 1.48499 * 109.47261 * 210.00166 * 17 15 13 20 20 H 1.48504 * 109.47302 * 330.00023 * 17 15 13 21 21 C 1.39221 * 107.13982 * 359.61315 * 6 4 3 22 22 C 1.46749 * 126.51750 * 180.24397 * 21 6 4 23 23 O 1.21588 * 120.00252 * 89.99782 * 22 21 6 24 24 O 1.34836 * 120.00058 * 270.00829 * 22 21 6 25 25 H 1.08997 * 109.46965 * 269.96289 * 1 2 3 26 26 H 1.08991 * 109.47036 * 29.96256 * 1 2 3 27 27 H 1.09000 * 109.46741 * 149.95996 * 1 2 3 28 28 H 1.09003 * 109.46863 * 272.85771 * 5 4 3 29 29 H 1.09002 * 109.46907 * 32.85154 * 5 4 3 30 30 H 1.08998 * 109.47073 * 152.85486 * 5 4 3 31 31 H 0.96999 * 119.99582 * 150.15958 * 7 6 4 32 32 H 1.08998 * 109.47377 * 179.97438 * 12 10 8 33 33 H 1.08999 * 109.47038 * 300.00290 * 12 10 8 34 34 H 1.08998 * 109.47112 * 59.99746 * 12 10 8 35 35 H 0.97000 * 120.00015 * 179.97438 * 16 15 13 36 36 H 0.96695 * 117.00014 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2714 1.0554 0.0000 4 7 3.6114 0.6533 0.0047 5 6 4.7728 1.5461 0.0118 6 6 3.6538 -0.6937 -0.0012 7 7 4.7935 -1.4806 -0.0015 8 6 5.9249 -1.0277 -0.5772 9 8 5.9175 0.0207 -1.1866 10 6 7.2005 -1.8213 -0.4584 11 1 7.4650 -1.9285 0.5937 12 6 6.9994 -3.2059 -1.0774 13 6 8.3087 -1.1024 -1.1837 14 1 8.1091 -0.1649 -1.6813 15 6 9.5773 -1.6415 -1.2120 16 7 9.8205 -2.7829 -0.6056 17 14 10.9508 -0.7507 -2.1117 18 1 11.6351 0.1774 -1.1759 19 1 11.9282 -1.7420 -2.6288 20 1 10.3812 0.0206 -3.2456 21 6 2.3370 -1.1457 -0.0007 22 6 1.8939 -2.5447 -0.0009 23 8 1.7109 -3.1247 1.0520 24 8 1.6899 -3.1871 -1.1687 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3633 0.8902 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0339 1.8107 -1.0129 29 1 4.5323 2.4506 0.5705 30 1 5.6162 1.0414 0.4830 31 1 4.7773 -2.3576 0.4125 32 1 7.9222 -3.7797 -0.9918 33 1 6.1979 -3.7256 -0.5525 34 1 6.7349 -3.0987 -2.1294 35 1 10.7129 -3.1623 -0.6258 36 1 1.3988 -4.1078 -1.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600773285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = -65.214470 kcal Electronic energy + Delta-G solvation = -22433.701728 eV Core-core repulsion = 18919.259080 eV Total energy + Delta-G solvation = -3514.442648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98716 -40.99073 -40.53252 -36.99698 -36.28547 -36.01404 -34.85545 -32.67331 -30.92663 -30.36381 -27.31898 -27.13046 -25.45163 -24.18499 -22.39594 -21.73052 -20.29089 -19.36797 -18.90348 -18.36991 -18.12577 -17.59230 -17.20058 -16.69130 -16.25352 -16.01067 -15.49377 -15.20344 -14.69598 -14.50873 -14.25424 -14.17461 -13.87007 -13.58010 -13.37594 -13.10769 -12.93400 -12.74844 -12.56169 -12.55560 -12.35186 -12.23527 -12.05507 -11.83159 -11.55857 -11.11422 -10.76617 -10.46645 -10.06944 -9.50510 -8.18910 -6.29944 0.34412 0.97347 1.02378 1.22212 1.41443 1.44031 1.53524 1.61076 1.85209 2.34994 2.43031 3.12558 3.37381 3.73528 3.91644 4.18200 4.22541 4.32838 4.49389 4.60997 4.68455 4.72101 4.76206 4.81765 4.84212 4.91482 4.97730 5.38693 5.44016 5.50794 5.68196 5.69459 5.85264 6.02052 6.20197 6.53838 6.77695 6.96949 7.00156 7.39226 8.87045 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.004890 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.794258 B = 5725.130235 C = 6534.503295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.133 3.867 3 N -0.308 5.308 4 N -0.360 5.360 5 C 0.121 3.879 6 C 0.366 3.634 7 N -0.648 5.648 8 C 0.522 3.478 9 O -0.532 6.532 10 C 0.033 3.967 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.024 3.976 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.329 4.329 22 C 0.586 3.414 23 O -0.530 6.530 24 O -0.503 6.503 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.433 0.567 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 0.542 1.579 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 N -0.131 5.131 4 N -0.143 5.143 5 C -0.019 4.019 6 C 0.139 3.861 7 N -0.299 5.299 8 C 0.313 3.687 9 O -0.406 6.406 10 C 0.012 3.988 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.548 5.548 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.202 1.202 21 C -0.345 4.345 22 C 0.429 3.571 23 O -0.419 6.419 24 O -0.316 6.316 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.274 0.726 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -15.026 2.766 1.426 15.344 hybrid contribution 1.099 -1.510 -0.194 1.878 sum -13.926 1.256 1.232 14.037 Atomic orbital electron populations 1.20455 0.82743 1.05109 1.04898 1.22745 0.98468 0.87135 0.95119 1.77063 0.84907 1.22489 1.28646 1.48497 1.06888 1.02847 1.56020 1.22184 0.82482 0.92944 1.04313 1.18256 0.87593 0.83920 0.96376 1.43277 1.07943 1.20678 1.58041 1.22133 0.84773 0.85662 0.76105 1.90638 1.85524 1.24099 1.40334 1.18854 0.87332 0.93691 0.98972 0.92991 1.21632 1.01980 0.96442 0.98365 1.21213 0.93602 1.07455 1.34349 0.92352 1.25547 1.00429 0.95640 0.96008 1.69937 1.22249 1.18796 1.43827 0.85589 0.78957 0.78425 0.78879 1.20054 1.20467 1.20183 1.18599 0.90670 0.92633 1.32615 1.19356 0.71861 0.84993 0.80933 1.90901 1.48823 1.68309 1.33875 1.84716 1.79479 1.33423 1.33969 0.88301 0.88564 0.89116 0.89842 0.88183 0.90526 0.72623 0.90533 0.93208 0.95254 0.92511 0.70664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.28 71.24 0.73 -0.58 16 2 C 0.13 3.74 7.26 43.58 0.32 4.06 16 3 N -0.31 -9.91 12.47 -46.62 -0.58 -10.50 16 4 N -0.36 -12.45 3.94 -365.03 -1.44 -13.88 16 5 C 0.12 3.91 9.21 127.77 1.18 5.09 16 6 C 0.37 12.62 7.34 132.54 0.97 13.60 16 7 N -0.65 -22.16 5.27 -307.36 -1.62 -23.78 16 8 C 0.52 21.41 6.09 87.66 0.53 21.94 16 9 O -0.53 -23.89 10.49 -2.99 -0.03 -23.92 16 10 C 0.03 1.48 2.65 -12.29 -0.03 1.45 16 11 H 0.05 2.45 8.14 -2.38 -0.02 2.43 16 12 C -0.13 -5.30 8.87 71.98 0.64 -4.67 16 13 C -0.53 -27.75 8.37 25.60 0.21 -27.54 16 14 H 0.06 3.23 6.75 -2.91 -0.02 3.21 16 15 C 0.02 1.23 5.30 84.65 0.45 1.68 16 16 N -0.91 -48.12 11.32 21.45 0.24 -47.88 16 17 Si 0.96 42.25 29.54 68.60 2.03 44.28 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 C -0.33 -10.15 6.02 -20.02 -0.12 -10.27 16 22 C 0.59 15.95 7.83 70.05 0.55 16.50 16 23 O -0.53 -16.23 17.90 19.55 0.35 -15.88 16 24 O -0.50 -10.58 13.44 -57.48 -0.77 -11.35 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 28 H 0.08 2.94 6.89 -2.39 -0.02 2.92 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.08 2.68 6.11 -2.39 -0.01 2.67 16 31 H 0.43 12.87 8.08 -92.71 -0.75 12.12 16 32 H 0.08 3.61 6.07 -2.39 -0.01 3.59 16 33 H 0.05 1.68 7.44 -2.39 -0.02 1.66 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.43 4.38 9.11 -74.06 -0.67 3.70 16 Total: -1.00 -66.06 312.40 3.33 -62.73 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.27 Total: 18.93 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.43 Total: 21.25 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -3.40 Total: -96.04 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.45 Total: -51.15 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -66.06 3.33 -62.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.484 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds