Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30306 * 125.91833 * 2 1 4 4 N 1.39895 * 109.21168 * 179.79999 * 3 2 1 5 5 C 1.46503 * 125.74611 * 180.27181 * 4 3 2 6 6 C 1.34769 * 108.51157 * 0.40192 * 4 3 2 7 7 N 1.38489 * 126.43228 * 179.87669 * 6 4 3 8 8 C 1.34772 * 120.00025 * 330.16738 * 7 6 4 9 9 O 1.21268 * 120.00133 * 354.14076 * 8 7 6 10 10 C 1.50700 * 119.99846 * 174.14719 * 8 7 6 11 11 H 1.09001 * 109.47040 * 59.99750 * 10 8 7 12 12 C 1.53002 * 109.47324 * 299.99709 * 10 8 7 13 13 C 1.50699 * 109.47162 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99808 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00410 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99484 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00384 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46739 * 60.00259 * 17 15 13 19 19 H 1.48499 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47134 * 300.00509 * 17 15 13 21 21 C 1.39234 * 107.13352 * 359.61078 * 6 4 3 22 22 C 1.46748 * 126.51148 * 180.24174 * 21 6 4 23 23 O 1.21593 * 119.99977 * 90.00121 * 22 21 6 24 24 O 1.34825 * 120.00061 * 270.00635 * 22 21 6 25 25 H 1.09010 * 109.47016 * 269.95347 * 1 2 3 26 26 H 1.08996 * 109.47378 * 29.95352 * 1 2 3 27 27 H 1.08999 * 109.47369 * 149.95727 * 1 2 3 28 28 H 1.08993 * 109.47771 * 272.85487 * 5 4 3 29 29 H 1.09001 * 109.46722 * 32.86066 * 5 4 3 30 30 H 1.09007 * 109.47054 * 152.85027 * 5 4 3 31 31 H 0.97004 * 119.99863 * 150.15787 * 7 6 4 32 32 H 1.08992 * 109.47083 * 59.99949 * 12 10 8 33 33 H 1.09001 * 109.46625 * 300.00256 * 12 10 8 34 34 H 1.08997 * 109.47250 * 180.02562 * 12 10 8 35 35 H 0.97006 * 119.99930 * 179.97438 * 16 15 13 36 36 H 0.96707 * 117.00430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2713 1.0553 0.0000 4 7 3.6112 0.6531 0.0046 5 6 4.7728 1.5459 0.0117 6 6 3.6537 -0.6939 -0.0015 7 7 4.7933 -1.4808 -0.0020 8 6 5.9247 -1.0279 -0.5775 9 8 5.9173 0.0206 -1.1868 10 6 7.1989 -1.8245 -0.4640 11 1 7.0528 -2.8088 -0.9089 12 6 7.5722 -1.9820 1.0114 13 6 8.3072 -1.1054 -1.1890 14 1 8.1088 -0.1654 -1.6823 15 6 9.5747 -1.6471 -1.2218 16 7 9.8163 -2.7915 -0.6206 17 14 10.9483 -0.7561 -2.1211 18 1 11.1470 0.5856 -1.5164 19 1 12.2039 -1.5410 -2.0091 20 1 10.5857 -0.6048 -3.5532 21 6 2.3368 -1.1458 -0.0009 22 6 1.8937 -2.5448 -0.0013 23 8 1.7108 -3.1249 1.0515 24 8 1.6897 -3.1870 -1.1691 25 1 -0.3633 -0.0008 1.0278 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 5.0340 1.8106 -1.0128 29 1 4.5324 2.4504 0.5706 30 1 5.6162 1.0412 0.4830 31 1 4.7772 -2.3579 0.4119 32 1 6.7705 -2.5023 1.5355 33 1 7.7182 -0.9976 1.4563 34 1 8.4940 -2.5578 1.0935 35 1 10.7080 -3.1729 -0.6439 36 1 1.3978 -4.1076 -1.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600773286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = -43.862141 kcal Electronic energy + Delta-G solvation = -22426.832922 eV Core-core repulsion = 18913.316180 eV Total energy + Delta-G solvation = -3513.516742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68394 -39.72627 -39.13848 -35.92846 -34.81440 -34.22780 -33.53247 -30.87967 -29.71809 -29.17031 -26.00206 -25.34008 -23.93747 -22.87061 -20.84585 -20.46307 -18.92228 -18.17725 -17.62213 -16.72139 -16.60333 -16.15068 -15.77764 -15.20660 -14.75238 -14.58916 -14.24876 -13.60145 -13.44363 -13.20240 -13.05305 -12.85371 -12.59440 -12.24481 -11.94064 -11.80334 -11.49269 -11.18321 -11.09085 -10.95336 -10.85806 -10.65544 -10.46649 -10.20307 -10.14973 -9.23075 -9.07370 -8.79093 -8.54932 -8.17588 -6.21141 -4.26821 1.70929 2.12724 2.27134 2.40126 3.16372 3.20897 3.25489 3.29343 3.35070 3.46466 4.31521 4.51599 4.87641 5.12428 5.26007 5.33147 5.48605 5.52478 5.59481 5.66296 5.71201 5.84558 6.03408 6.11104 6.38677 6.45363 6.54439 6.56804 6.64233 7.02270 7.19902 7.36855 7.58207 7.76483 7.86288 7.95656 8.05186 8.55322 8.80924 9.39853 10.86250 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.004807 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.777464 B = 5822.967915 C = 6466.306500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.132 3.868 3 N -0.294 5.294 4 N -0.349 5.349 5 C 0.115 3.885 6 C 0.391 3.609 7 N -0.661 5.661 8 C 0.514 3.486 9 O -0.512 6.512 10 C 0.036 3.964 11 H 0.061 0.939 12 C -0.137 4.137 13 C -0.510 4.510 14 H 0.075 0.925 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.325 4.325 22 C 0.577 3.423 23 O -0.510 6.510 24 O -0.508 6.508 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.424 0.576 32 H 0.015 0.985 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.863 1.088 2.133 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.035 4.035 3 N -0.117 5.117 4 N -0.131 5.131 5 C -0.024 4.024 6 C 0.162 3.838 7 N -0.312 5.312 8 C 0.307 3.693 9 O -0.384 6.384 10 C 0.015 3.985 11 H 0.079 0.921 12 C -0.195 4.195 13 C -0.548 4.548 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.342 4.342 22 C 0.419 3.581 23 O -0.398 6.398 24 O -0.319 6.319 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.329 3.346 1.980 13.884 hybrid contribution 0.723 -1.562 -0.216 1.734 sum -12.606 1.784 1.764 12.853 Atomic orbital electron populations 1.20241 0.86042 1.03615 1.03401 1.21972 0.96556 0.88116 0.96906 1.77066 0.85185 1.21614 1.27790 1.48330 1.06314 1.02739 1.55732 1.22304 0.82900 0.92250 1.04979 1.18040 0.87289 0.83595 0.94873 1.43690 1.08539 1.20381 1.58634 1.22692 0.84399 0.86490 0.75762 1.90633 1.85050 1.23450 1.39301 1.18955 0.86985 0.96230 0.96376 0.92114 1.21813 1.02587 1.00520 0.94564 1.20999 0.92469 1.07922 1.33447 0.90639 1.24939 0.98711 0.94946 0.95336 1.69844 1.22145 1.17971 1.43106 0.86449 0.80536 0.79560 0.80294 1.20098 1.21234 1.20090 1.18249 0.91046 0.91219 1.33643 1.19672 0.72267 0.85533 0.80666 1.90901 1.47765 1.68052 1.33086 1.84780 1.79957 1.31551 1.35578 0.89948 0.90090 0.90568 0.88391 0.90809 0.89072 0.73724 0.96645 0.94734 0.88218 0.92579 0.73506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.28 36.00 0.37 -0.41 16 2 C 0.13 1.99 7.26 -82.01 -0.60 1.40 16 3 N -0.29 -4.92 12.47 33.91 0.42 -4.50 16 4 N -0.35 -6.12 3.94 -66.72 -0.26 -6.39 16 5 C 0.12 1.88 9.21 59.85 0.55 2.43 16 6 C 0.39 6.88 7.34 -153.42 -1.13 5.75 16 7 N -0.66 -11.48 5.19 -11.08 -0.06 -11.53 16 8 C 0.51 10.49 6.09 -10.99 -0.07 10.43 16 9 O -0.51 -11.30 10.49 5.57 0.06 -11.24 16 10 C 0.04 0.80 2.63 -92.92 -0.24 0.56 16 11 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 12 C -0.14 -2.87 8.88 37.16 0.33 -2.54 16 13 C -0.51 -13.20 8.38 -34.44 -0.29 -13.49 16 14 H 0.08 2.03 6.75 -52.49 -0.35 1.68 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -23.53 11.32 55.43 0.63 -22.91 16 17 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.33 -5.29 6.02 -104.86 -0.63 -5.92 16 22 C 0.58 8.49 7.83 34.17 0.27 8.75 16 23 O -0.51 -8.36 17.90 -19.34 -0.35 -8.71 16 24 O -0.51 -6.05 13.44 -40.83 -0.55 -6.60 16 25 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 28 H 0.10 1.69 6.89 -51.93 -0.36 1.33 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.58 6.11 -51.93 -0.32 1.26 16 31 H 0.42 6.49 8.43 -40.82 -0.34 6.15 16 32 H 0.01 0.26 7.71 -51.93 -0.40 -0.14 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.34 6.07 -51.93 -0.32 2.02 16 35 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.41 2.70 9.11 45.56 0.42 3.11 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -31.02 312.93 -5.28 -36.30 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -3.34 Total: 6.83 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.53 Total: 8.48 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.73 Total: -45.32 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.84 Total: -26.54 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.02 -5.28 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.562 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds