Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30306 * 125.91833 * 2 1 4 4 N 1.39895 * 109.21168 * 179.79999 * 3 2 1 5 5 C 1.46503 * 125.74611 * 180.27181 * 4 3 2 6 6 C 1.34769 * 108.51157 * 0.40192 * 4 3 2 7 7 N 1.38489 * 126.43228 * 179.87669 * 6 4 3 8 8 C 1.34772 * 120.00025 * 330.16738 * 7 6 4 9 9 O 1.21268 * 120.00133 * 354.14076 * 8 7 6 10 10 C 1.50700 * 119.99846 * 174.14719 * 8 7 6 11 11 H 1.09001 * 109.47040 * 59.99750 * 10 8 7 12 12 C 1.53002 * 109.47324 * 299.99709 * 10 8 7 13 13 C 1.50699 * 109.47162 * 179.97438 * 10 8 7 14 14 H 1.08002 * 119.99808 * 0.02562 * 13 10 8 15 15 C 1.37877 * 120.00410 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99484 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00384 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46739 * 60.00259 * 17 15 13 19 19 H 1.48499 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47134 * 300.00509 * 17 15 13 21 21 C 1.39234 * 107.13352 * 359.61078 * 6 4 3 22 22 C 1.46748 * 126.51148 * 180.24174 * 21 6 4 23 23 O 1.21593 * 119.99977 * 90.00121 * 22 21 6 24 24 O 1.34825 * 120.00061 * 270.00635 * 22 21 6 25 25 H 1.09010 * 109.47016 * 269.95347 * 1 2 3 26 26 H 1.08996 * 109.47378 * 29.95352 * 1 2 3 27 27 H 1.08999 * 109.47369 * 149.95727 * 1 2 3 28 28 H 1.08993 * 109.47771 * 272.85487 * 5 4 3 29 29 H 1.09001 * 109.46722 * 32.86066 * 5 4 3 30 30 H 1.09007 * 109.47054 * 152.85027 * 5 4 3 31 31 H 0.97004 * 119.99863 * 150.15787 * 7 6 4 32 32 H 1.08992 * 109.47083 * 59.99949 * 12 10 8 33 33 H 1.09001 * 109.46625 * 300.00256 * 12 10 8 34 34 H 1.08997 * 109.47250 * 180.02562 * 12 10 8 35 35 H 0.97006 * 119.99930 * 179.97438 * 16 15 13 36 36 H 0.96707 * 117.00430 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2713 1.0553 0.0000 4 7 3.6112 0.6531 0.0046 5 6 4.7728 1.5459 0.0117 6 6 3.6537 -0.6939 -0.0015 7 7 4.7933 -1.4808 -0.0020 8 6 5.9247 -1.0279 -0.5775 9 8 5.9173 0.0206 -1.1868 10 6 7.1989 -1.8245 -0.4640 11 1 7.0528 -2.8088 -0.9089 12 6 7.5722 -1.9820 1.0114 13 6 8.3072 -1.1054 -1.1890 14 1 8.1088 -0.1654 -1.6823 15 6 9.5747 -1.6471 -1.2218 16 7 9.8163 -2.7915 -0.6206 17 14 10.9483 -0.7561 -2.1211 18 1 11.1470 0.5856 -1.5164 19 1 12.2039 -1.5410 -2.0091 20 1 10.5857 -0.6048 -3.5532 21 6 2.3368 -1.1458 -0.0009 22 6 1.8937 -2.5448 -0.0013 23 8 1.7108 -3.1249 1.0515 24 8 1.6897 -3.1870 -1.1691 25 1 -0.3633 -0.0008 1.0278 26 1 -0.3634 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 5.0340 1.8106 -1.0128 29 1 4.5324 2.4504 0.5706 30 1 5.6162 1.0412 0.4830 31 1 4.7772 -2.3579 0.4119 32 1 6.7705 -2.5023 1.5355 33 1 7.7182 -0.9976 1.4563 34 1 8.4940 -2.5578 1.0935 35 1 10.7080 -3.1729 -0.6439 36 1 1.3978 -4.1076 -1.1188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600773286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = -65.149933 kcal Electronic energy + Delta-G solvation = -22427.756029 eV Core-core repulsion = 18913.316180 eV Total energy + Delta-G solvation = -3514.439850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.98613 -40.99297 -40.53151 -37.00005 -36.28392 -35.99917 -34.85738 -32.67652 -30.91720 -30.37655 -27.32561 -27.11110 -25.48042 -24.14909 -22.40661 -21.72274 -20.28378 -19.36568 -18.88609 -18.36945 -18.12341 -17.65077 -17.12300 -16.71484 -16.23214 -16.12583 -15.48342 -15.20615 -14.64847 -14.48638 -14.26471 -14.16286 -13.70563 -13.65292 -13.36289 -13.16160 -12.94022 -12.73570 -12.66276 -12.56346 -12.34337 -12.22443 -12.03365 -11.81880 -11.55414 -11.12832 -10.73595 -10.48321 -10.06708 -9.50195 -8.18570 -6.29735 0.34559 0.97237 1.02442 1.22368 1.43498 1.44175 1.51794 1.62061 1.84635 2.34786 2.43244 3.12780 3.37548 3.73724 3.91561 4.18477 4.22628 4.32949 4.49284 4.62244 4.66693 4.72505 4.76174 4.82233 4.85085 4.91312 4.97347 5.38698 5.43976 5.50551 5.68384 5.68543 5.85362 6.02838 6.20195 6.54088 6.77604 6.97118 6.99855 7.39340 8.87147 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.004807 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.777464 B = 5822.967915 C = 6466.306500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.133 3.867 3 N -0.308 5.308 4 N -0.360 5.360 5 C 0.121 3.879 6 C 0.367 3.633 7 N -0.647 5.647 8 C 0.522 3.478 9 O -0.532 6.532 10 C 0.033 3.967 11 H 0.051 0.949 12 C -0.125 4.125 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.024 3.976 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.277 1.277 21 C -0.329 4.329 22 C 0.586 3.414 23 O -0.529 6.529 24 O -0.503 6.503 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.433 0.567 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.266 0.734 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 0.961 2.249 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 N -0.131 5.131 4 N -0.142 5.142 5 C -0.019 4.019 6 C 0.139 3.861 7 N -0.299 5.299 8 C 0.313 3.687 9 O -0.406 6.406 10 C 0.012 3.988 11 H 0.068 0.932 12 C -0.183 4.183 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.176 4.176 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.346 4.346 22 C 0.428 3.572 23 O -0.419 6.419 24 O -0.316 6.316 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.274 0.726 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -14.826 3.182 2.098 15.308 hybrid contribution 1.070 -1.557 -0.273 1.909 sum -13.756 1.625 1.825 13.971 Atomic orbital electron populations 1.20453 0.82759 1.05103 1.04896 1.22737 0.98460 0.87133 0.95121 1.77061 0.84914 1.22487 1.28650 1.48490 1.06868 1.02841 1.56000 1.22183 0.82499 0.92935 1.04296 1.18255 0.87577 0.83916 0.96350 1.43267 1.07878 1.20647 1.58073 1.22129 0.84655 0.85914 0.75965 1.90638 1.85469 1.24159 1.40353 1.18836 0.87513 0.95555 0.96891 0.93163 1.21632 1.02572 1.00273 0.93853 1.21182 0.93887 1.07670 1.33964 0.92337 1.25548 1.00438 0.95623 0.95997 1.69931 1.22522 1.18671 1.43660 0.85647 0.78468 0.78697 0.79051 1.19916 1.20464 1.20274 1.18599 0.90677 0.92614 1.32671 1.19361 0.71867 0.85004 0.80926 1.90902 1.48820 1.68304 1.33873 1.84714 1.79463 1.33460 1.33995 0.88303 0.88564 0.89126 0.89849 0.88233 0.90509 0.72619 0.93379 0.95083 0.90558 0.92507 0.70655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.28 71.23 0.73 -0.59 16 2 C 0.13 3.74 7.26 43.58 0.32 4.06 16 3 N -0.31 -9.91 12.47 -46.63 -0.58 -10.49 16 4 N -0.36 -12.41 3.94 -365.01 -1.44 -13.85 16 5 C 0.12 3.92 9.21 127.77 1.18 5.10 16 6 C 0.37 12.62 7.34 132.54 0.97 13.59 16 7 N -0.65 -22.09 5.19 -307.36 -1.60 -23.68 16 8 C 0.52 21.38 6.09 87.66 0.53 21.91 16 9 O -0.53 -23.86 10.49 -2.99 -0.03 -23.89 16 10 C 0.03 1.51 2.63 -12.29 -0.03 1.48 16 11 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 12 C -0.13 -5.23 8.88 71.98 0.64 -4.59 16 13 C -0.53 -27.78 8.38 25.60 0.21 -27.57 16 14 H 0.06 3.22 6.75 -2.91 -0.02 3.20 16 15 C 0.02 1.25 5.30 84.65 0.45 1.69 16 16 N -0.91 -48.13 11.32 21.45 0.24 -47.89 16 17 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C -0.33 -10.16 6.02 -20.02 -0.12 -10.28 16 22 C 0.59 15.96 7.83 70.05 0.55 16.51 16 23 O -0.53 -16.24 17.90 19.53 0.35 -15.89 16 24 O -0.50 -10.62 13.44 -57.37 -0.77 -11.39 16 25 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 28 H 0.08 2.94 6.89 -2.39 -0.02 2.92 16 29 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.08 2.69 6.11 -2.38 -0.01 2.68 16 31 H 0.43 12.83 8.43 -92.71 -0.78 12.04 16 32 H 0.05 1.64 7.71 -2.39 -0.02 1.62 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 3.58 6.07 -2.39 -0.01 3.57 16 35 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 36 H 0.43 4.40 9.11 -74.05 -0.67 3.73 16 Total: -1.00 -65.90 312.93 3.32 -62.57 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.31 Total: 18.93 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 5.43 Total: 21.32 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -3.37 Total: -95.91 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.45 Total: -51.17 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.90 3.32 -62.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds