Wall clock time and date at job start Tue Mar 31 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00416 * 2 1 4 4 H 1.48509 * 109.47145 * 240.00615 * 3 2 1 5 5 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47262 * 120.00157 * 3 2 1 7 7 C 1.37878 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47156 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00113 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47249 * 179.97438 * 13 12 11 15 15 C 1.38352 * 119.85814 * 260.27445 * 14 13 12 16 16 C 1.37930 * 120.17586 * 180.27641 * 15 14 13 17 17 C 1.39651 * 119.89716 * 359.72666 * 16 15 14 18 18 C 1.47740 * 120.13462 * 180.02562 * 17 16 15 19 19 O 1.21468 * 119.99791 * 179.97438 * 18 17 16 20 20 O 1.34705 * 120.00033 * 359.97438 * 18 17 16 21 21 C 1.39580 * 119.72995 * 359.97438 * 17 16 15 22 22 C 1.38198 * 119.81695 * 0.02562 * 21 17 16 23 23 F 1.35104 * 119.95219 * 180.02562 * 22 21 17 24 24 H 0.97008 * 119.99780 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47525 * 59.99175 * 9 7 2 26 26 H 1.09004 * 109.46931 * 300.00156 * 9 7 2 27 27 H 1.09001 * 109.47214 * 59.99815 * 10 9 7 28 28 H 1.08998 * 109.47319 * 299.99511 * 10 9 7 29 29 H 1.08995 * 109.47077 * 59.99407 * 11 10 9 30 30 H 1.08999 * 109.46762 * 299.99441 * 11 10 9 31 31 H 1.00902 * 111.00104 * 56.04277 * 12 11 10 32 32 H 1.09004 * 109.47192 * 59.99693 * 13 12 11 33 33 H 1.09003 * 109.46962 * 300.00302 * 13 12 11 34 34 H 1.07997 * 119.91245 * 0.02562 * 15 14 13 35 35 H 1.07996 * 120.05343 * 179.70655 * 16 15 14 36 36 H 0.96699 * 116.99981 * 180.02562 * 20 18 17 37 37 H 1.07991 * 120.09370 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9872 -0.0020 12 7 2.4345 -6.1038 -0.0024 13 6 1.7342 -7.3951 -0.0023 14 6 2.7437 -8.5140 -0.0033 15 6 3.0537 -9.1609 -1.1864 16 6 3.9725 -10.1896 -1.1939 17 6 4.5954 -10.5753 -0.0050 18 6 5.5806 -11.6762 -0.0071 19 8 6.1213 -12.0093 1.0284 20 8 5.8794 -12.3105 -1.1573 21 6 4.2841 -9.9158 1.1851 22 6 3.3619 -8.8865 1.1795 23 9 3.0589 -8.2459 2.3297 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6041 -0.8909 29 1 0.8537 -5.0447 -0.8922 30 1 0.8530 -5.0450 0.8878 31 1 3.0694 -6.0370 0.7790 32 1 1.1090 -7.4694 -0.8921 33 1 1.1095 -7.4695 0.8879 34 1 2.5722 -8.8622 -2.1057 35 1 4.2095 -10.6963 -2.1177 36 1 6.5296 -13.0245 -1.1087 37 1 4.7626 -10.2089 2.1078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:30 Heat of formation + Delta-G solvation = -128.002286 kcal Electronic energy + Delta-G solvation = -20432.576979 eV Core-core repulsion = 16895.491685 eV Total energy + Delta-G solvation = -3537.085294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.20196 -40.81411 -39.14153 -36.62138 -36.42352 -33.83923 -32.36965 -31.09551 -30.58069 -27.35587 -25.42702 -23.62556 -22.98130 -22.15408 -21.43654 -20.12714 -18.81966 -18.04888 -16.86391 -16.40202 -16.21737 -16.18046 -15.87069 -15.81042 -15.30526 -14.63343 -14.36514 -14.22955 -13.98919 -13.67339 -13.33901 -12.79983 -12.65993 -12.27059 -12.14392 -11.98670 -11.60885 -11.51820 -11.41417 -11.05291 -10.81976 -10.59082 -10.54180 -9.71075 -9.56678 -9.33070 -9.15273 -9.04566 -8.33698 -8.29918 -5.98708 -4.00805 0.11770 0.76402 2.03439 2.46931 3.17713 3.34807 3.38775 3.41685 3.89123 4.18690 4.27421 4.46155 4.55012 4.57458 4.65084 4.79734 5.20734 5.26940 5.37076 5.49004 5.59156 5.62122 5.71384 5.75775 5.83400 5.98171 5.99892 6.28104 6.34735 6.67260 6.70776 7.11641 7.20686 7.41493 7.47642 7.68679 7.83315 8.01433 8.44632 9.06080 9.63098 11.12710 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.002454 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.863508 B =11406.557514 C =11460.474256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.088 3.912 14 C -0.068 4.068 15 C -0.087 4.087 16 C -0.069 4.069 17 C -0.108 4.108 18 C 0.531 3.469 19 O -0.511 6.511 20 O -0.510 6.510 21 C -0.090 4.090 22 C 0.093 3.907 23 F -0.130 7.130 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.340 0.660 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.417 0.583 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.244 -25.691 -2.390 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.315 5.315 13 C -0.041 4.041 14 C -0.070 4.070 15 C -0.106 4.106 16 C -0.088 4.088 17 C -0.110 4.110 18 C 0.375 3.625 19 O -0.400 6.400 20 O -0.322 6.322 21 C -0.109 4.109 22 C 0.074 3.926 23 F -0.108 7.108 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.276 0.724 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.000 -25.297 -2.769 26.393 hybrid contribution 0.524 0.543 1.234 1.446 sum 7.524 -24.754 -1.535 25.918 Atomic orbital electron populations 1.69957 1.06058 1.26679 1.50930 1.25030 0.94863 0.99271 0.95366 0.86647 0.79567 0.83085 0.78636 1.20210 1.21315 1.20265 1.21217 0.93034 0.91052 1.50493 0.92712 1.19059 0.93985 0.91317 0.97143 1.21631 0.99236 0.92804 1.00841 1.22181 0.94051 0.90515 1.00208 1.60699 1.20294 1.00475 1.50035 1.20948 0.93334 0.87350 1.02420 1.20330 0.97408 0.97227 0.92028 1.21006 0.97254 0.94717 0.97582 1.21528 0.94058 0.95618 0.97553 1.18716 0.99972 0.97665 0.94626 1.20731 0.80078 0.80887 0.80790 1.90912 1.51116 1.64570 1.33434 1.84540 1.61186 1.50107 1.36332 1.21131 0.96498 0.94150 0.99072 1.17321 0.98530 0.94520 0.82267 1.91550 1.91872 1.80279 1.47104 0.92977 0.96539 0.96781 0.93588 0.92461 0.91162 0.95421 0.84241 0.89139 0.93582 0.83629 0.83623 0.72439 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 11 C 0.06 0.99 5.69 -3.82 -0.02 0.96 16 12 N -0.68 -9.75 6.49 -115.05 -0.75 -10.50 16 13 C 0.09 1.01 5.52 -4.98 -0.03 0.98 16 14 C -0.07 -0.70 5.41 -104.46 -0.56 -1.27 16 15 C -0.09 -0.72 9.65 -39.65 -0.38 -1.10 16 16 C -0.07 -0.53 9.62 -39.17 -0.38 -0.91 16 17 C -0.11 -0.98 5.87 -104.99 -0.62 -1.60 16 18 C 0.53 4.76 8.27 34.61 0.29 5.04 16 19 O -0.51 -6.05 17.13 -19.24 -0.33 -6.37 16 20 O -0.51 -2.92 12.68 -40.50 -0.51 -3.43 16 21 C -0.09 -0.90 9.57 -39.10 -0.37 -1.27 16 22 C 0.09 1.02 7.23 -39.48 -0.29 0.73 16 23 F -0.13 -1.58 16.65 2.25 0.04 -1.54 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.34 4.86 8.71 -39.29 -0.34 4.52 16 32 H 0.09 0.92 8.00 -51.93 -0.42 0.51 16 33 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 34 H 0.15 0.94 8.03 -52.49 -0.42 0.52 16 35 H 0.15 0.80 7.61 -52.49 -0.40 0.41 16 36 H 0.42 0.56 9.11 45.56 0.42 0.98 16 37 H 0.15 1.44 7.65 -52.49 -0.40 1.04 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.14 330.82 -7.96 -41.10 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.05 Total: -0.66 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.06 Total: -14.02 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.01 Total: -36.89 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.84 Total: -9.81 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.14 -7.96 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.899 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds