Wall clock time and date at job start Tue Mar 31 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00416 * 2 1 4 4 H 1.48509 * 109.47145 * 240.00615 * 3 2 1 5 5 H 1.48502 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47262 * 120.00157 * 3 2 1 7 7 C 1.37878 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47156 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00113 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47249 * 179.97438 * 13 12 11 15 15 C 1.38352 * 119.85814 * 260.27445 * 14 13 12 16 16 C 1.37930 * 120.17586 * 180.27641 * 15 14 13 17 17 C 1.39651 * 119.89716 * 359.72666 * 16 15 14 18 18 C 1.47740 * 120.13462 * 180.02562 * 17 16 15 19 19 O 1.21468 * 119.99791 * 179.97438 * 18 17 16 20 20 O 1.34705 * 120.00033 * 359.97438 * 18 17 16 21 21 C 1.39580 * 119.72995 * 359.97438 * 17 16 15 22 22 C 1.38198 * 119.81695 * 0.02562 * 21 17 16 23 23 F 1.35104 * 119.95219 * 180.02562 * 22 21 17 24 24 H 0.97008 * 119.99780 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47525 * 59.99175 * 9 7 2 26 26 H 1.09004 * 109.46931 * 300.00156 * 9 7 2 27 27 H 1.09001 * 109.47214 * 59.99815 * 10 9 7 28 28 H 1.08998 * 109.47319 * 299.99511 * 10 9 7 29 29 H 1.08995 * 109.47077 * 59.99407 * 11 10 9 30 30 H 1.08999 * 109.46762 * 299.99441 * 11 10 9 31 31 H 1.00902 * 111.00104 * 56.04277 * 12 11 10 32 32 H 1.09004 * 109.47192 * 59.99693 * 13 12 11 33 33 H 1.09003 * 109.46962 * 300.00302 * 13 12 11 34 34 H 1.07997 * 119.91245 * 0.02562 * 15 14 13 35 35 H 1.07996 * 120.05343 * 179.70655 * 16 15 14 36 36 H 0.96699 * 116.99981 * 180.02562 * 20 18 17 37 37 H 1.07991 * 120.09370 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9872 -0.0020 12 7 2.4345 -6.1038 -0.0024 13 6 1.7342 -7.3951 -0.0023 14 6 2.7437 -8.5140 -0.0033 15 6 3.0537 -9.1609 -1.1864 16 6 3.9725 -10.1896 -1.1939 17 6 4.5954 -10.5753 -0.0050 18 6 5.5806 -11.6762 -0.0071 19 8 6.1213 -12.0093 1.0284 20 8 5.8794 -12.3105 -1.1573 21 6 4.2841 -9.9158 1.1851 22 6 3.3619 -8.8865 1.1795 23 9 3.0589 -8.2459 2.3297 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6041 -0.8909 29 1 0.8537 -5.0447 -0.8922 30 1 0.8530 -5.0450 0.8878 31 1 3.0694 -6.0370 0.7790 32 1 1.1090 -7.4694 -0.8921 33 1 1.1095 -7.4695 0.8879 34 1 2.5722 -8.8622 -2.1057 35 1 4.2095 -10.6963 -2.1177 36 1 6.5296 -13.0245 -1.1087 37 1 4.7626 -10.2089 2.1078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:30 Heat of formation + Delta-G solvation = -150.106040 kcal Electronic energy + Delta-G solvation = -20433.535470 eV Core-core repulsion = 16895.491685 eV Total energy + Delta-G solvation = -3538.043785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06464 -41.48698 -39.86957 -37.74786 -37.15015 -35.60755 -33.84900 -32.12174 -31.69037 -28.75461 -26.83076 -24.62843 -24.05860 -23.34056 -22.25634 -21.78402 -19.49277 -18.73179 -18.49340 -17.65693 -17.03432 -16.97922 -16.83757 -16.61140 -16.53352 -16.38208 -15.54283 -15.25241 -14.99846 -14.58957 -14.38120 -14.19646 -13.84189 -13.50031 -13.27651 -13.18254 -12.84523 -12.63657 -12.59991 -12.47808 -12.31393 -12.25929 -11.78957 -11.53393 -11.39794 -11.13752 -10.54322 -10.23067 -9.90438 -9.45111 -8.19762 -6.30610 -0.60042 0.05806 1.33837 1.40413 1.43499 1.51429 1.89187 2.41191 2.47103 3.13297 3.14682 3.23895 3.56408 3.60509 3.92279 3.96331 4.08636 4.23759 4.31141 4.49389 4.55233 4.67635 4.72677 4.91126 4.96069 4.98574 5.05707 5.09145 5.22520 5.26337 5.50822 5.51890 5.64321 5.75370 5.86288 5.94185 6.26738 6.29672 6.86073 6.90088 7.38447 8.91881 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.002454 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.863508 B =11406.557514 C =11460.474256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.072 3.928 12 N -0.684 5.684 13 C 0.090 3.910 14 C -0.077 4.077 15 C -0.081 4.081 16 C -0.054 4.054 17 C -0.115 4.115 18 C 0.538 3.462 19 O -0.547 6.547 20 O -0.497 6.497 21 C -0.098 4.098 22 C 0.076 3.924 23 F -0.144 7.144 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.010 1.010 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.339 0.661 32 H 0.107 0.893 33 H 0.042 0.958 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.437 0.563 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -26.475 -3.905 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.314 5.314 13 C -0.039 4.039 14 C -0.079 4.079 15 C -0.099 4.099 16 C -0.072 4.072 17 C -0.117 4.117 18 C 0.384 3.616 19 O -0.439 6.439 20 O -0.311 6.311 21 C -0.117 4.117 22 C 0.057 3.943 23 F -0.123 7.123 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.008 0.992 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.299 0.701 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.086 -26.118 -4.305 27.677 hybrid contribution 0.201 0.686 1.645 1.794 sum 8.287 -25.432 -2.660 26.880 Atomic orbital electron populations 1.70087 1.07748 1.27835 1.51659 1.25986 0.95809 1.03366 0.94742 0.85505 0.78288 0.78103 0.79183 1.19088 1.20751 1.19317 1.21678 0.93524 0.92490 1.50577 0.92341 1.18964 0.94401 0.92964 0.94883 1.21379 0.98071 0.92995 1.00686 1.21882 0.93846 0.89727 1.00256 1.60630 1.19800 1.00960 1.50009 1.20989 0.93662 0.86180 1.03042 1.20298 0.97577 0.97395 0.92587 1.21300 0.96892 0.94170 0.97569 1.21814 0.92678 0.94815 0.97887 1.18873 1.00209 0.97736 0.94836 1.20674 0.79441 0.80616 0.80904 1.90906 1.52474 1.65687 1.34846 1.84488 1.61627 1.50534 1.34433 1.21147 0.96579 0.94318 0.99621 1.17505 0.99460 0.95183 0.82183 1.91508 1.92112 1.80669 1.47969 0.92750 0.98627 0.99173 0.93606 0.92588 0.90763 0.95835 0.84374 0.87462 0.94029 0.81238 0.80816 0.70064 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.36 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.87 5.41 30.60 0.17 -3.70 16 11 C 0.07 2.38 5.69 86.31 0.49 2.87 16 12 N -0.68 -18.77 6.49 -517.92 -3.36 -22.13 16 13 C 0.09 1.93 5.52 85.56 0.47 2.40 16 14 C -0.08 -1.47 5.41 -19.76 -0.11 -1.58 16 15 C -0.08 -1.10 9.65 22.22 0.21 -0.89 16 16 C -0.05 -0.66 9.62 22.54 0.22 -0.44 16 17 C -0.12 -1.90 5.87 -20.10 -0.12 -2.02 16 18 C 0.54 8.77 8.27 70.33 0.58 9.35 16 19 O -0.55 -12.64 17.13 19.94 0.34 -12.30 16 20 O -0.50 -4.27 12.68 -56.14 -0.71 -4.98 16 21 C -0.10 -1.93 9.57 22.58 0.22 -1.71 16 22 C 0.08 1.64 7.23 22.34 0.16 1.80 16 23 F -0.14 -3.60 16.65 44.97 0.75 -2.85 16 24 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.34 9.51 8.71 -89.69 -0.78 8.72 16 32 H 0.11 1.94 8.00 -2.38 -0.02 1.92 16 33 H 0.04 0.94 7.94 -2.39 -0.02 0.92 16 34 H 0.17 1.50 8.03 -2.91 -0.02 1.48 16 35 H 0.17 1.14 7.61 -2.91 -0.02 1.12 16 36 H 0.44 -0.03 9.11 -74.06 -0.67 -0.71 16 37 H 0.14 2.91 7.65 -2.92 -0.02 2.88 16 Total: -1.00 -71.80 330.82 2.11 -69.69 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -0.35 Total: 6.07 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.14 Total: -23.28 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -3.08 Total: -79.04 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.37 Total: -17.28 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.75 Total: -2.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.80 2.11 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.417 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds