Wall clock time and date at job start Tue Mar 31 2020 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48497 * 109.46424 * 269.99741 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99618 * 3 2 1 6 6 H 1.48503 * 109.47043 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38473 * 119.82752 * 269.72436 * 14 13 12 16 16 C 1.37833 * 120.22928 * 179.76446 * 15 14 13 17 17 C 1.39724 * 119.87007 * 0.48806 * 16 15 14 18 18 C 1.47558 * 120.17390 * 179.74296 * 17 16 15 19 19 O 1.21484 * 120.00183 * 180.02562 * 18 17 16 20 20 O 1.34729 * 120.00075 * 0.02725 * 18 17 16 21 21 C 1.39881 * 119.65330 * 359.76671 * 17 16 15 22 22 F 1.35106 * 120.11171 * 179.97438 * 21 17 16 23 23 C 1.38209 * 119.82430 * 89.99956 * 14 13 12 24 24 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 26 26 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 27 27 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 29 29 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 30 30 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 31 31 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 32 32 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 33 33 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 34 34 H 1.08004 * 119.88217 * 0.02562 * 15 14 13 35 35 H 1.08000 * 120.06869 * 180.23541 * 16 15 14 36 36 H 0.96699 * 117.00431 * 180.02562 * 20 18 17 37 37 H 1.08006 * 119.93587 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2015 -9.0290 -1.2007 16 6 4.1285 -10.0491 -1.2104 17 6 4.6007 -10.5717 -0.0037 18 6 5.5888 -11.6676 -0.0063 19 8 5.9969 -12.1200 1.0447 20 8 6.0384 -12.1665 -1.1743 21 6 4.1314 -10.0510 1.2068 22 9 4.5814 -10.5498 2.3790 23 6 3.2049 -9.0241 1.1996 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 3.0694 -6.0365 -0.7813 32 1 1.1103 -7.4695 0.8907 33 1 1.1097 -7.4692 -0.8892 34 1 2.8336 -8.6273 -2.1333 35 1 4.4860 -10.4464 -2.1489 36 1 6.6848 -12.8840 -1.1254 37 1 2.8408 -8.6200 2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:34 Heat of formation + Delta-G solvation = -127.025166 kcal Electronic energy + Delta-G solvation = -20339.509663 eV Core-core repulsion = 16802.466740 eV Total energy + Delta-G solvation = -3537.042923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.18940 -40.64989 -39.29939 -36.51637 -36.39341 -33.83810 -32.39550 -31.11228 -30.58937 -27.38198 -25.40335 -23.48628 -23.11264 -22.25060 -21.34880 -20.17104 -18.55805 -17.91283 -17.05479 -16.74521 -16.33817 -16.28540 -15.65139 -15.49384 -14.98584 -14.74677 -14.53442 -14.27433 -13.95857 -13.68899 -13.34439 -12.66574 -12.57442 -12.32756 -12.14528 -11.93779 -11.68148 -11.52972 -11.44497 -10.91516 -10.86164 -10.62620 -10.52836 -9.74251 -9.56761 -9.33012 -9.16954 -9.07044 -8.36570 -8.33778 -6.01112 -4.03268 0.13739 0.79275 2.10474 2.54057 3.17238 3.31487 3.37819 3.41675 3.72937 4.15769 4.26744 4.44950 4.54220 4.58712 4.81711 4.87598 5.12015 5.24940 5.34862 5.48515 5.58456 5.62481 5.70038 5.71750 5.80502 6.05137 6.08039 6.23990 6.35439 6.63765 6.67279 7.08569 7.16894 7.45254 7.47918 7.66184 7.80250 7.98919 8.42009 9.03898 9.60939 11.10288 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.002347 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.073812 B =11926.372407 C =11960.968825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.685 5.685 13 C 0.087 3.913 14 C -0.007 4.007 15 C -0.141 4.141 16 C -0.032 4.032 17 C -0.175 4.175 18 C 0.527 3.473 19 O -0.504 6.504 20 O -0.511 6.511 21 C 0.166 3.834 22 F -0.115 7.115 23 C -0.146 4.146 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.341 0.659 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.416 0.584 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -24.365 -3.711 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.316 5.316 13 C -0.042 4.042 14 C -0.008 4.008 15 C -0.159 4.159 16 C -0.050 4.050 17 C -0.177 4.177 18 C 0.371 3.629 19 O -0.392 6.392 20 O -0.324 6.324 21 C 0.146 3.854 22 F -0.093 7.093 23 C -0.165 4.165 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.275 0.725 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.574 -24.054 -2.699 25.082 hybrid contribution 0.630 0.352 -0.674 0.987 sum 7.204 -23.702 -3.373 25.001 Atomic orbital electron populations 1.69961 1.06063 1.26601 1.50982 1.25032 0.94855 0.99290 0.95352 0.86593 0.79890 0.83446 0.78078 1.20695 1.21226 1.19839 1.21251 0.93070 0.91036 1.50415 0.92656 1.19065 0.93992 0.91355 0.97147 1.21632 0.99232 0.92807 1.00865 1.22186 0.94020 0.90508 1.00230 1.60628 1.20402 1.00461 1.50143 1.21039 0.93346 0.87430 1.02364 1.20065 0.94530 0.94149 0.92037 1.21178 0.98638 0.97695 0.98427 1.21317 0.93281 0.93565 0.96818 1.19055 1.03569 1.01068 0.94010 1.20582 0.79729 0.81347 0.81223 1.90962 1.56466 1.59011 1.32783 1.84529 1.59548 1.53438 1.34858 1.17682 0.94101 0.93314 0.80298 1.91608 1.87131 1.85844 1.44743 1.21065 0.98453 0.96600 1.00415 0.93016 0.96792 0.96534 0.92454 0.93568 0.95421 0.91179 0.84162 0.89444 0.93496 0.84360 0.83472 0.72522 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.13 5.41 -26.73 -0.14 -2.27 16 11 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 12 N -0.69 -8.80 6.49 -115.05 -0.75 -9.55 16 13 C 0.09 0.87 5.80 -4.97 -0.03 0.84 16 14 C -0.01 -0.06 5.40 -104.55 -0.56 -0.63 16 15 C -0.14 -1.09 9.67 -39.64 -0.38 -1.48 16 16 C -0.03 -0.25 9.62 -39.17 -0.38 -0.62 16 17 C -0.17 -1.77 5.88 -104.93 -0.62 -2.39 16 18 C 0.53 5.46 8.27 34.53 0.29 5.75 16 19 O -0.50 -6.86 16.13 -19.25 -0.31 -7.17 16 20 O -0.51 -3.41 12.68 -40.57 -0.51 -3.92 16 21 C 0.17 1.86 7.29 -38.94 -0.28 1.58 16 22 F -0.12 -1.52 15.55 2.25 0.04 -1.49 16 23 C -0.15 -1.47 9.66 -39.57 -0.38 -1.85 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.34 4.09 8.72 -39.29 -0.34 3.75 16 32 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.15 0.84 7.61 -52.49 -0.40 0.44 16 36 H 0.42 0.94 9.11 45.56 0.42 1.36 16 37 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -33.39 329.84 -8.01 -41.39 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.09 Total: -1.52 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.07 Total: -13.21 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.01 Total: -35.63 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.82 Total: -11.09 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.39 -8.01 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.632 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds