Wall clock time and date at job start Tue Mar 31 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48497 * 109.46424 * 269.99741 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99618 * 3 2 1 6 6 H 1.48503 * 109.47043 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 C 1.38473 * 119.82752 * 269.72436 * 14 13 12 16 16 C 1.37833 * 120.22928 * 179.76446 * 15 14 13 17 17 C 1.39724 * 119.87007 * 0.48806 * 16 15 14 18 18 C 1.47558 * 120.17390 * 179.74296 * 17 16 15 19 19 O 1.21484 * 120.00183 * 180.02562 * 18 17 16 20 20 O 1.34729 * 120.00075 * 0.02725 * 18 17 16 21 21 C 1.39881 * 119.65330 * 359.76671 * 17 16 15 22 22 F 1.35106 * 120.11171 * 179.97438 * 21 17 16 23 23 C 1.38209 * 119.82430 * 89.99956 * 14 13 12 24 24 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 26 26 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 27 27 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 29 29 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 30 30 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 31 31 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 32 32 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 33 33 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 34 34 H 1.08004 * 119.88217 * 0.02562 * 15 14 13 35 35 H 1.08000 * 120.06869 * 180.23541 * 16 15 14 36 36 H 0.96699 * 117.00431 * 180.02562 * 20 18 17 37 37 H 1.08006 * 119.93587 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7349 -7.3950 0.0005 14 6 2.7444 -8.5138 0.0005 15 6 3.2015 -9.0290 -1.2007 16 6 4.1285 -10.0491 -1.2104 17 6 4.6007 -10.5717 -0.0037 18 6 5.5888 -11.6676 -0.0063 19 8 5.9969 -12.1200 1.0447 20 8 6.0384 -12.1665 -1.1743 21 6 4.1314 -10.0510 1.2068 22 9 4.5814 -10.5498 2.3790 23 6 3.2049 -9.0241 1.1996 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 3.0694 -6.0365 -0.7813 32 1 1.1103 -7.4695 0.8907 33 1 1.1097 -7.4692 -0.8892 34 1 2.8336 -8.6273 -2.1333 35 1 4.4860 -10.4464 -2.1489 36 1 6.6848 -12.8840 -1.1254 37 1 2.8408 -8.6200 2.1327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:33 Heat of formation + Delta-G solvation = -149.532115 kcal Electronic energy + Delta-G solvation = -20340.485637 eV Core-core repulsion = 16802.466740 eV Total energy + Delta-G solvation = -3538.018897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.07054 -41.39147 -40.03784 -37.63884 -37.14483 -35.55924 -33.80875 -32.17885 -31.62813 -28.74581 -26.79247 -24.52546 -23.98570 -23.50720 -22.17284 -21.76564 -19.26069 -18.69656 -18.46260 -17.82117 -17.51526 -17.14224 -16.69950 -16.55253 -16.32475 -15.84889 -15.60424 -15.40257 -14.84168 -14.74553 -14.31903 -14.20040 -13.74096 -13.46797 -13.18782 -13.05945 -12.94329 -12.65587 -12.61042 -12.48317 -12.30082 -12.21300 -11.72567 -11.49702 -11.36603 -11.10164 -10.53471 -10.20940 -9.90307 -9.35175 -8.18952 -6.29394 -0.60769 0.10054 1.34965 1.41200 1.42295 1.53543 1.90269 2.41568 2.45631 2.97877 3.14385 3.31986 3.51824 3.75070 3.92987 4.13006 4.18808 4.26137 4.34517 4.48460 4.60712 4.75525 4.78526 4.91895 4.96198 5.01565 5.05541 5.14614 5.27450 5.37463 5.47593 5.54452 5.66323 5.78752 5.88802 6.01429 6.29026 6.47623 6.86986 6.88060 7.39821 8.92752 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034858 B = 0.002347 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.073812 B =11926.372407 C =11960.968825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.690 5.690 13 C 0.090 3.910 14 C -0.010 4.010 15 C -0.129 4.129 16 C -0.020 4.020 17 C -0.186 4.186 18 C 0.531 3.469 19 O -0.546 6.546 20 O -0.497 6.497 21 C 0.139 3.861 22 F -0.135 7.135 23 C -0.150 4.150 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.009 1.009 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.348 0.652 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.435 0.565 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -24.628 -5.493 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.322 5.322 13 C -0.038 4.038 14 C -0.011 4.011 15 C -0.147 4.147 16 C -0.038 4.038 17 C -0.188 4.188 18 C 0.377 3.623 19 O -0.438 6.438 20 O -0.311 6.311 21 C 0.119 3.881 22 F -0.113 7.113 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.298 0.702 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.401 -24.347 -4.511 25.844 hybrid contribution 0.373 0.379 -0.193 0.566 sum 7.774 -23.968 -4.703 25.633 Atomic orbital electron populations 1.70086 1.07718 1.27726 1.51831 1.25969 0.95779 1.03307 0.94836 0.85476 0.78649 0.78579 0.78525 1.19655 1.20807 1.18925 1.21720 0.93526 0.92533 1.50291 0.92355 1.18978 0.94461 0.93018 0.94879 1.21378 0.98028 0.93070 1.00722 1.21844 0.93822 0.89628 1.00277 1.60486 1.20098 1.00790 1.50810 1.21048 0.93502 0.85957 1.03335 1.20034 0.94607 0.94137 0.92332 1.21493 0.97570 0.96841 0.98839 1.21607 0.92451 0.92885 0.96827 1.19258 1.03792 1.01289 0.94466 1.20673 0.79266 0.81018 0.81344 1.90947 1.58024 1.60431 1.34388 1.84480 1.59815 1.53988 1.32772 1.17969 0.95408 0.94481 0.80239 1.91551 1.87588 1.86296 1.45915 1.21124 0.98304 0.96428 1.01053 0.92795 0.98781 0.99035 0.93230 0.92922 0.94904 0.91735 0.83351 0.89443 0.91596 0.81570 0.80770 0.70205 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.69 5.41 30.59 0.17 -3.52 16 11 C 0.07 2.22 5.69 86.30 0.49 2.71 16 12 N -0.69 -16.32 6.49 -517.92 -3.36 -19.68 16 13 C 0.09 1.58 5.80 85.55 0.50 2.07 16 14 C -0.01 -0.17 5.40 -19.82 -0.11 -0.28 16 15 C -0.13 -1.56 9.67 22.23 0.22 -1.34 16 16 C -0.02 -0.25 9.62 22.53 0.22 -0.03 16 17 C -0.19 -3.54 5.88 -20.06 -0.12 -3.66 16 18 C 0.53 10.53 8.27 70.28 0.58 11.11 16 19 O -0.55 -15.08 16.13 19.89 0.32 -14.76 16 20 O -0.50 -5.48 12.68 -56.39 -0.72 -6.20 16 21 C 0.14 3.12 7.29 22.69 0.17 3.29 16 22 F -0.14 -3.74 15.55 44.97 0.70 -3.04 16 23 C -0.15 -2.92 9.66 22.28 0.22 -2.70 16 24 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.35 7.42 8.72 -89.69 -0.78 6.64 16 32 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.17 1.24 7.61 -2.91 -0.02 1.22 16 36 H 0.44 1.02 9.11 -74.06 -0.67 0.35 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -73.11 329.84 2.07 -71.05 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -0.35 Total: 3.77 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.16 Total: -21.08 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -3.08 Total: -75.86 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.39 Total: -20.95 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.70 Total: -3.04 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.11 2.07 -71.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.485 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds