Wall clock time and date at job start Tue Mar 31 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72068 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46997 * 325.00809 * 14 13 11 16 16 C 1.52998 * 109.47415 * 205.00509 * 14 13 11 17 17 N 1.46490 * 109.47534 * 65.00073 * 16 14 13 18 18 C 1.36884 * 126.40071 * 269.71727 * 17 16 14 19 19 C 1.34670 * 106.82227 * 179.83731 * 18 17 16 20 20 N 1.34125 * 108.01767 * 0.41999 * 19 18 17 21 21 C 1.30499 * 109.25767 * 359.73029 * 20 19 18 22 22 C 1.50704 * 109.46855 * 85.00362 * 14 13 11 23 23 O 1.20823 * 119.99778 * 359.97438 * 22 14 13 24 24 O 1.34225 * 120.00081 * 180.02562 * 22 14 13 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47045 * 185.00551 * 16 14 13 32 32 H 1.09003 * 109.46946 * 304.99455 * 16 14 13 33 33 H 1.08004 * 126.58880 * 359.97438 * 18 17 16 34 34 H 1.07998 * 125.98692 * 180.11725 * 19 18 17 35 35 H 1.08000 * 125.65042 * 180.02562 * 21 20 19 36 36 H 0.96700 * 117.00193 * 179.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0045 12 8 0.2789 -4.9672 0.0101 13 7 2.1655 -6.1344 0.0052 14 6 1.4331 -7.4031 0.0075 15 1 0.5230 -7.2962 0.5977 16 6 2.3109 -8.4977 0.6175 17 7 2.5621 -8.1928 2.0282 18 6 3.6064 -7.4625 2.5279 19 6 3.4513 -7.4252 3.8651 20 7 2.3476 -8.1217 4.1743 21 6 1.8097 -8.5844 3.0790 22 6 1.0732 -7.7779 -1.4071 23 8 1.3951 -7.0588 -2.3231 24 8 0.3942 -8.9101 -1.6494 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 3.1355 -6.1344 0.0048 31 1 1.8015 -9.4581 0.5385 32 1 3.2588 -8.5442 0.0814 33 1 4.4009 -7.0025 1.9589 34 1 4.1042 -6.9264 4.5660 35 1 0.9114 -9.1813 3.0223 36 1 0.1859 -9.1081 -2.5727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:51 Heat of formation + Delta-G solvation = -66.551293 kcal Electronic energy + Delta-G solvation = -21767.083294 eV Core-core repulsion = 18252.582676 eV Total energy + Delta-G solvation = -3514.500617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.26656 -40.74011 -39.11352 -36.43864 -35.98915 -33.49922 -33.32111 -31.19928 -29.97903 -29.29450 -25.89808 -25.16980 -22.47445 -21.57893 -21.29732 -20.95286 -19.89685 -18.42883 -18.01405 -17.12455 -16.93729 -16.20159 -15.99891 -15.54555 -14.94326 -14.71705 -14.60966 -14.41309 -14.05420 -13.58761 -13.33565 -13.22188 -13.09634 -12.54459 -12.25710 -12.18648 -11.77289 -11.20344 -11.02487 -10.94705 -10.59370 -10.12017 -10.00739 -9.90962 -9.75004 -9.37580 -9.25613 -9.08083 -8.64663 -8.33639 -5.97187 -4.01767 1.71140 1.98523 2.28477 2.59933 3.06260 3.09474 3.31699 3.32621 3.39730 3.42967 3.98449 4.14641 4.46618 4.57876 4.61321 4.66188 4.95786 4.99518 5.31319 5.38120 5.48899 5.55155 6.01944 6.14625 6.16501 6.19291 6.23602 6.58155 6.80801 6.94932 7.53372 7.58698 7.72569 7.82522 7.93436 8.04531 8.34305 8.54743 9.06203 9.62011 11.13909 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004348 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.940496 B = 6437.718947 C = 7613.215146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.126 4.126 11 C 0.521 3.479 12 O -0.526 6.526 13 N -0.723 5.723 14 C 0.142 3.858 15 H 0.133 0.867 16 C 0.108 3.892 17 N -0.459 5.459 18 C -0.051 4.051 19 C -0.026 4.026 20 N -0.493 5.493 21 C 0.185 3.815 22 C 0.466 3.534 23 O -0.488 6.488 24 O -0.518 6.518 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.403 0.597 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.205 0.795 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -22.337 0.316 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.166 4.166 11 C 0.311 3.689 12 O -0.399 6.399 13 N -0.378 5.378 14 C 0.033 3.967 15 H 0.150 0.850 16 C -0.016 4.016 17 N -0.143 5.143 18 C -0.182 4.182 19 C -0.173 4.173 20 N -0.210 5.210 21 C -0.097 4.097 22 C 0.303 3.697 23 O -0.373 6.373 24 O -0.330 6.330 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.238 0.762 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.191 0.809 34 H 0.187 0.813 35 H 0.222 0.778 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 6.056 -22.029 1.129 22.875 hybrid contribution 0.983 0.976 -1.648 2.153 sum 7.039 -21.054 -0.520 22.206 Atomic orbital electron populations 1.70006 1.06090 1.26527 1.50197 1.25024 0.94821 0.99275 0.95238 0.86522 0.79997 0.83774 0.77598 1.19720 1.21018 1.20971 1.21227 0.92961 0.90886 1.51407 0.92495 1.18916 0.93150 0.89359 0.98641 1.21876 1.00830 0.91138 1.02741 1.21739 0.88711 0.85401 0.73092 1.90682 1.14494 1.87281 1.47492 1.46033 1.09978 1.03714 1.78110 1.20671 0.99470 0.86388 0.90206 0.84975 1.22005 1.01759 0.98238 0.79571 1.45396 1.21392 1.40620 1.06871 1.22731 0.95656 1.03631 0.96213 1.22321 0.97711 1.03644 0.93589 1.70308 1.09505 1.13683 1.27527 1.25075 0.99668 1.03743 0.81253 1.23837 0.74852 0.78303 0.92699 1.90783 1.50190 1.50279 1.46013 1.84484 1.69647 1.41713 1.37200 0.92974 0.95823 0.95784 0.89891 0.89873 0.76187 0.85969 0.87766 0.80872 0.81298 0.77835 0.72777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 11 C 0.52 9.79 7.66 -10.98 -0.08 9.71 16 12 O -0.53 -12.19 15.64 5.56 0.09 -12.10 16 13 N -0.72 -9.25 4.30 -54.93 -0.24 -9.49 16 14 C 0.14 1.47 2.72 -69.08 -0.19 1.29 16 15 H 0.13 1.60 7.57 -51.93 -0.39 1.20 16 16 C 0.11 0.66 5.61 -4.05 -0.02 0.64 16 17 N -0.46 -3.91 2.69 -118.58 -0.32 -4.23 16 18 C -0.05 -0.46 11.30 -16.56 -0.19 -0.65 16 19 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 20 N -0.49 -6.39 11.25 -14.67 -0.16 -6.55 16 21 C 0.18 1.85 12.56 -90.37 -1.14 0.71 16 22 C 0.47 5.23 7.66 36.01 0.28 5.51 16 23 O -0.49 -7.58 17.08 -18.75 -0.32 -7.90 16 24 O -0.52 -3.86 13.23 -39.24 -0.52 -4.38 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.40 3.93 8.56 -40.82 -0.35 3.58 16 31 H 0.12 0.45 8.00 -51.93 -0.42 0.04 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.41 1.58 9.10 45.56 0.41 2.00 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -40.11 326.26 -6.74 -46.85 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.66 Total: 1.84 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.24 Total: 1.18 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.02 Total: -47.16 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.75 Total: -24.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -40.11 -6.74 -46.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.698 kcal (2) G-P(sol) polarization free energy of solvation -40.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds