Wall clock time and date at job start Tue Mar 31 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72068 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46997 * 325.00809 * 14 13 11 16 16 C 1.52998 * 109.47415 * 205.00509 * 14 13 11 17 17 N 1.46490 * 109.47534 * 65.00073 * 16 14 13 18 18 C 1.36884 * 126.40071 * 269.71727 * 17 16 14 19 19 C 1.34670 * 106.82227 * 179.83731 * 18 17 16 20 20 N 1.34125 * 108.01767 * 0.41999 * 19 18 17 21 21 C 1.30499 * 109.25767 * 359.73029 * 20 19 18 22 22 C 1.50704 * 109.46855 * 85.00362 * 14 13 11 23 23 O 1.20823 * 119.99778 * 359.97438 * 22 14 13 24 24 O 1.34225 * 120.00081 * 180.02562 * 22 14 13 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47045 * 185.00551 * 16 14 13 32 32 H 1.09003 * 109.46946 * 304.99455 * 16 14 13 33 33 H 1.08004 * 126.58880 * 359.97438 * 18 17 16 34 34 H 1.07998 * 125.98692 * 180.11725 * 19 18 17 35 35 H 1.08000 * 125.65042 * 180.02562 * 21 20 19 36 36 H 0.96700 * 117.00193 * 179.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4917 -4.9672 0.0045 12 8 0.2789 -4.9672 0.0101 13 7 2.1655 -6.1344 0.0052 14 6 1.4331 -7.4031 0.0075 15 1 0.5230 -7.2962 0.5977 16 6 2.3109 -8.4977 0.6175 17 7 2.5621 -8.1928 2.0282 18 6 3.6064 -7.4625 2.5279 19 6 3.4513 -7.4252 3.8651 20 7 2.3476 -8.1217 4.1743 21 6 1.8097 -8.5844 3.0790 22 6 1.0732 -7.7779 -1.4071 23 8 1.3951 -7.0588 -2.3231 24 8 0.3942 -8.9101 -1.6494 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 3.1355 -6.1344 0.0048 31 1 1.8015 -9.4581 0.5385 32 1 3.2588 -8.5442 0.0814 33 1 4.4009 -7.0025 1.9589 34 1 4.1042 -6.9264 4.5660 35 1 0.9114 -9.1813 3.0223 36 1 0.1859 -9.1081 -2.5727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:50 Heat of formation + Delta-G solvation = -97.061607 kcal Electronic energy + Delta-G solvation = -21768.406320 eV Core-core repulsion = 18252.582676 eV Total energy + Delta-G solvation = -3515.823644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.99223 -41.70903 -40.43976 -37.31859 -36.94614 -35.59556 -34.34504 -33.05322 -30.97997 -30.12818 -27.70324 -26.04859 -24.11223 -22.39408 -22.29662 -21.81444 -21.32040 -19.27812 -18.99294 -18.66128 -17.87164 -17.59468 -17.21695 -16.62613 -16.43241 -16.31926 -15.67320 -15.28592 -15.00016 -14.68557 -14.46772 -14.25535 -14.14359 -13.89597 -13.74211 -13.27266 -13.09097 -12.86205 -12.62552 -12.45826 -12.03027 -11.97209 -11.68174 -11.32192 -10.94942 -10.89269 -10.73145 -10.59673 -10.40731 -9.38120 -8.19835 -6.33999 0.91602 1.17971 1.38085 1.41560 1.43093 1.56297 1.78849 1.81928 2.29546 2.34685 2.43450 3.13684 3.28383 3.63132 3.86347 3.95975 4.02036 4.15817 4.24308 4.41025 4.45714 4.51202 4.66695 4.83038 4.99795 5.13300 5.32676 5.47242 5.50598 5.58902 5.82355 5.86929 6.14827 6.28217 6.34605 6.83791 6.85477 7.15312 7.20081 7.36599 8.93287 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.004348 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.940496 B = 6437.718947 C = 7613.215146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.117 4.117 11 C 0.523 3.477 12 O -0.581 6.581 13 N -0.700 5.700 14 C 0.139 3.861 15 H 0.116 0.884 16 C 0.119 3.881 17 N -0.456 5.456 18 C -0.042 4.042 19 C -0.062 4.062 20 N -0.541 5.541 21 C 0.179 3.821 22 C 0.476 3.524 23 O -0.536 6.536 24 O -0.500 6.500 25 H 0.263 0.737 26 H -0.022 1.022 27 H -0.018 1.018 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.422 0.578 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.205 0.795 34 H 0.173 0.827 35 H 0.231 0.769 36 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.701 -23.601 -0.327 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.312 3.688 12 O -0.460 6.460 13 N -0.355 5.355 14 C 0.030 3.970 15 H 0.134 0.866 16 C -0.004 4.004 17 N -0.139 5.139 18 C -0.175 4.175 19 C -0.208 4.208 20 N -0.259 5.259 21 C -0.104 4.104 22 C 0.315 3.685 23 O -0.425 6.425 24 O -0.313 6.313 25 H 0.071 0.929 26 H -0.003 1.003 27 H 0.001 0.999 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.260 0.740 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.221 0.779 34 H 0.190 0.810 35 H 0.248 0.752 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 8.567 -23.377 0.480 24.902 hybrid contribution 0.153 1.243 -1.462 1.925 sum 8.720 -22.134 -0.982 23.810 Atomic orbital electron populations 1.70185 1.08387 1.27771 1.51563 1.26148 0.95707 1.04018 0.94583 0.85261 0.79374 0.78008 0.77531 1.17442 1.20697 1.20597 1.21732 0.94046 0.91484 1.50674 0.90441 1.18685 0.93694 0.92618 0.94516 1.21627 0.99375 0.89716 1.04987 1.21378 0.87826 0.86747 0.72859 1.90665 1.16687 1.88183 1.50430 1.45604 1.10881 1.03199 1.75848 1.20887 0.99722 0.86202 0.90199 0.86601 1.22240 1.02795 0.97443 0.77944 1.45512 1.20829 1.40056 1.07551 1.23179 0.95993 1.02538 0.95758 1.22625 0.98157 1.04867 0.95132 1.70245 1.10810 1.15270 1.29591 1.25621 1.00227 1.03436 0.81102 1.23777 0.74108 0.78370 0.92196 1.90783 1.52415 1.51939 1.47374 1.84432 1.68274 1.39660 1.38971 0.92863 1.00318 0.99935 0.87195 0.87836 0.73963 0.82600 0.84669 0.77868 0.80954 0.75242 0.70549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.30 13.29 21.45 0.28 -60.01 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.40 4.26 29.85 0.13 2.52 16 10 C -0.12 -4.68 5.64 29.85 0.17 -4.52 16 11 C 0.52 19.64 7.66 87.66 0.67 20.31 16 12 O -0.58 -28.01 15.64 -3.01 -0.05 -28.06 16 13 N -0.70 -16.56 4.30 -446.10 -1.92 -18.48 16 14 C 0.14 2.56 2.72 44.25 0.12 2.68 16 15 H 0.12 2.67 7.57 -2.39 -0.02 2.65 16 16 C 0.12 0.96 5.61 86.38 0.48 1.44 16 17 N -0.46 -6.43 2.69 -529.08 -1.42 -7.86 16 18 C -0.04 -0.67 11.30 83.09 0.94 0.27 16 19 C -0.06 -1.36 11.87 83.52 0.99 -0.36 16 20 N -0.54 -13.80 11.25 -200.31 -2.25 -16.05 16 21 C 0.18 3.26 12.56 180.26 2.26 5.53 16 22 C 0.48 9.68 7.66 71.24 0.55 10.22 16 23 O -0.54 -16.01 17.08 21.97 0.38 -15.64 16 24 O -0.50 -5.93 13.23 -51.37 -0.68 -6.61 16 25 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 26 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 27 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 28 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 29 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.42 6.77 8.56 -92.71 -0.79 5.98 16 31 H 0.16 0.35 8.00 -2.39 -0.02 0.33 16 32 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.23 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.43 2.04 9.10 -74.06 -0.67 1.36 16 Total: -1.00 -93.36 326.26 3.03 -90.34 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -0.34 Total: 8.38 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 7.01 Total: 7.32 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -5.31 Total: -102.41 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.35 Total: -50.31 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -93.36 3.03 -90.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.723 kcal (2) G-P(sol) polarization free energy of solvation -93.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds