Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47118 * 270.00438 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00270 * 3 2 1 7 7 C 1.37876 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09007 * 109.47747 * 35.00142 * 14 13 11 16 16 C 1.53006 * 109.47036 * 154.99621 * 14 13 11 17 17 N 1.46494 * 109.47191 * 294.99855 * 16 14 13 18 18 C 1.36885 * 126.40184 * 269.71522 * 17 16 14 19 19 C 1.34663 * 106.81987 * 179.84140 * 18 17 16 20 20 N 1.34129 * 108.02187 * 0.42386 * 19 18 17 21 21 C 1.30503 * 109.25531 * 359.72672 * 20 19 18 22 22 C 1.50703 * 109.47430 * 274.99668 * 14 13 11 23 23 O 1.20824 * 119.99526 * 0.02562 * 22 14 13 24 24 O 1.34222 * 120.00006 * 180.02562 * 22 14 13 25 25 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.09002 * 109.46733 * 54.99689 * 16 14 13 32 32 H 1.09003 * 109.47212 * 174.99514 * 16 14 13 33 33 H 1.07998 * 126.58561 * 359.97234 * 18 17 16 34 34 H 1.08000 * 125.99216 * 180.11116 * 19 18 17 35 35 H 1.07997 * 125.64737 * 180.02562 * 21 20 19 36 36 H 0.96702 * 116.99694 * 179.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1349 -1.5861 -0.0015 13 7 6.2024 -3.8037 -0.0065 14 6 7.6674 -3.8036 -0.0125 15 1 8.0332 -2.9632 0.5775 16 6 8.1800 -5.1124 0.5920 17 7 7.7983 -5.1803 2.0047 18 6 8.5316 -4.7250 3.0671 19 6 7.8123 -4.9825 4.1760 20 7 6.6750 -5.5872 3.8018 21 6 6.6597 -5.7090 2.5026 22 6 8.1640 -3.6765 -1.4297 23 8 7.3751 -3.5939 -2.3411 24 8 9.4826 -3.6549 -1.6794 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6804 0.8888 27 1 3.8746 -0.6800 -0.8911 28 1 3.6579 -3.1506 -0.8908 29 1 3.6585 -3.1502 0.8892 30 1 5.7174 -4.6437 -0.0064 31 1 7.7431 -5.9555 0.0567 32 1 9.2660 -5.1513 0.5067 33 1 9.4999 -4.2487 3.0239 34 1 8.1027 -4.7482 5.1895 35 1 5.8675 -6.1579 1.9218 36 1 9.7530 -3.5723 -2.6041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = -63.335628 kcal Electronic energy + Delta-G solvation = -21834.856479 eV Core-core repulsion = 18320.495304 eV Total energy + Delta-G solvation = -3514.361176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.31890 -40.82126 -39.24095 -36.52055 -36.07037 -33.53089 -33.41938 -31.41632 -29.97083 -29.55872 -26.23954 -25.24103 -22.35709 -21.63807 -21.27875 -20.91335 -19.91308 -18.50405 -18.10072 -17.34510 -17.05156 -16.33659 -16.18301 -15.71832 -15.07619 -14.87659 -14.49758 -14.17188 -14.08598 -13.63652 -13.48197 -13.33841 -13.13354 -12.68880 -12.57285 -12.38435 -11.84409 -11.45254 -11.10284 -10.97294 -10.22096 -10.15231 -10.08946 -9.97835 -9.82575 -9.48878 -9.33920 -9.19567 -8.71291 -8.50780 -6.02885 -4.01775 1.64679 1.92157 2.21060 2.51908 2.94922 3.05559 3.21261 3.37822 3.44248 3.54677 3.91178 4.08514 4.50814 4.53512 4.56905 4.58726 4.88275 4.92857 5.25189 5.32492 5.33960 5.49321 5.95472 6.00185 6.04439 6.11282 6.13177 6.52876 6.62296 6.89862 7.32704 7.39966 7.40592 7.51398 7.77316 7.89832 8.35817 8.52596 8.99728 9.59921 11.09947 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.004690 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.485106 B = 5968.616630 C = 7033.068963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.119 4.119 11 C 0.522 3.478 12 O -0.532 6.532 13 N -0.722 5.722 14 C 0.142 3.858 15 H 0.133 0.867 16 C 0.108 3.892 17 N -0.460 5.460 18 C -0.056 4.056 19 C -0.026 4.026 20 N -0.490 5.490 21 C 0.190 3.810 22 C 0.466 3.534 23 O -0.487 6.487 24 O -0.518 6.518 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.405 0.595 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.204 0.796 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.217 -14.159 0.804 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.159 4.159 11 C 0.312 3.688 12 O -0.406 6.406 13 N -0.377 5.377 14 C 0.033 3.967 15 H 0.150 0.850 16 C -0.016 4.016 17 N -0.144 5.144 18 C -0.188 4.188 19 C -0.173 4.173 20 N -0.208 5.208 21 C -0.093 4.093 22 C 0.303 3.697 23 O -0.372 6.372 24 O -0.330 6.330 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.240 0.760 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.192 0.808 34 H 0.187 0.813 35 H 0.220 0.780 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 21.550 -13.512 1.362 25.472 hybrid contribution 0.981 0.925 -1.376 1.927 sum 22.531 -12.587 -0.014 25.809 Atomic orbital electron populations 1.69908 1.06264 1.26977 1.50970 1.24954 0.94699 0.99170 0.94300 0.86808 0.80604 0.83495 0.78715 1.20258 1.21364 1.18627 1.21080 0.89108 0.94639 1.51438 0.90828 1.19378 0.96613 0.89945 0.97650 1.21686 0.86807 1.03696 1.03691 1.21721 0.91923 0.82230 0.72937 1.90666 1.70664 1.31307 1.47986 1.45994 1.03368 1.10502 1.77884 1.20671 0.84346 1.01461 0.90233 0.84990 1.22007 1.03418 0.96731 0.79447 1.45412 1.17196 1.45476 1.06299 1.22762 1.00732 1.08340 0.86932 1.22329 0.92269 1.03826 0.98857 1.70333 1.21513 1.18644 1.10262 1.25043 0.90710 1.02388 0.91125 1.23804 0.80290 0.72933 0.92652 1.90788 1.56492 1.43535 1.46385 1.84484 1.26095 1.85371 1.37091 0.92690 0.95816 0.96294 0.89156 0.89161 0.75972 0.87477 0.86112 0.80755 0.81335 0.77973 0.72730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.87 27.47 -169.99 -4.67 18.20 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 11 C 0.52 9.25 7.66 -10.98 -0.08 9.17 16 12 O -0.53 -11.51 15.65 5.55 0.09 -11.43 16 13 N -0.72 -8.67 4.27 -54.93 -0.23 -8.91 16 14 C 0.14 1.38 2.72 -69.08 -0.19 1.19 16 15 H 0.13 1.50 7.58 -51.93 -0.39 1.11 16 16 C 0.11 0.61 5.61 -4.04 -0.02 0.59 16 17 N -0.46 -3.74 2.70 -118.58 -0.32 -4.06 16 18 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 19 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 20 N -0.49 -6.29 11.25 -14.67 -0.17 -6.45 16 21 C 0.19 1.86 12.22 -90.37 -1.10 0.76 16 22 C 0.47 4.92 7.66 36.01 0.28 5.20 16 23 O -0.49 -7.20 17.08 -18.75 -0.32 -7.52 16 24 O -0.52 -3.60 13.23 -39.24 -0.52 -4.12 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.40 3.62 8.53 -40.82 -0.35 3.27 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.12 0.43 7.99 -51.93 -0.42 0.02 16 33 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.41 1.38 9.10 45.56 0.41 1.80 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -40.24 322.56 -6.34 -46.58 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.63 Total: 0.51 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.21 Total: -0.24 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.05 Total: -46.85 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.75 Total: -23.06 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -40.24 -6.34 -46.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.753 kcal (2) G-P(sol) polarization free energy of solvation -40.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds