Wall clock time and date at job start Tue Mar 31 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46997 * 299.99967 * 3 2 1 6 6 H 1.48497 * 109.46834 * 60.00339 * 3 2 1 7 7 C 1.38954 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 157.24074 * 7 2 1 9 9 N 1.37099 * 120.00045 * 337.23678 * 7 2 1 10 10 C 1.46499 * 119.99810 * 325.33174 * 9 7 2 11 11 C 1.53002 * 109.46738 * 269.99496 * 10 9 7 12 12 C 1.50701 * 109.46663 * 180.02562 * 11 10 9 13 13 O 1.20819 * 120.00189 * 359.97438 * 12 11 10 14 14 O 1.34237 * 119.99567 * 180.02562 * 12 11 10 15 15 C 1.34773 * 119.99505 * 145.32776 * 9 7 2 16 16 O 1.21297 * 119.99600 * 184.88604 * 15 9 7 17 17 C 1.50696 * 120.00626 * 4.88763 * 15 9 7 18 18 C 1.53000 * 109.47286 * 177.73591 * 17 15 9 19 19 C 1.50708 * 109.46806 * 179.97438 * 18 17 15 20 20 C 1.39870 * 126.03858 * 269.99853 * 19 18 17 21 21 N 1.30841 * 108.19821 * 179.74664 * 20 19 18 22 22 N 1.40084 * 108.20669 * 0.39839 * 21 20 19 23 23 H 0.97002 * 126.03564 * 179.85104 * 22 21 20 24 24 C 1.34948 * 107.92527 * 359.59728 * 22 21 20 25 25 H 0.97000 * 119.99444 * 4.95714 * 1 2 3 26 26 H 1.08994 * 109.47464 * 29.99461 * 10 9 7 27 27 H 1.08998 * 109.46735 * 149.99767 * 10 9 7 28 28 H 1.08998 * 109.47549 * 299.99974 * 11 10 9 29 29 H 1.08998 * 109.47286 * 60.00609 * 11 10 9 30 30 H 0.96704 * 116.99539 * 179.97438 * 14 12 11 31 31 H 1.08998 * 109.46964 * 57.73394 * 17 15 9 32 32 H 1.09002 * 109.47029 * 297.73765 * 17 15 9 33 33 H 1.08998 * 109.47279 * 59.99997 * 18 17 15 34 34 H 1.09001 * 109.46862 * 299.99368 * 18 17 15 35 35 H 1.08001 * 125.89728 * 359.97438 * 20 19 18 36 36 H 1.07994 * 126.12777 * 180.21747 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0257 -1.2397 -0.3624 9 7 1.4034 -2.3447 0.4584 10 6 0.4533 -2.2731 1.5712 11 6 1.2030 -2.4455 2.8937 12 6 0.2256 -2.3724 4.0384 13 8 -0.9499 -2.1997 3.8190 14 8 0.6612 -2.4982 5.3019 15 6 1.6822 -3.5323 -0.1144 16 8 1.0819 -4.5281 0.2311 17 6 2.7398 -3.6233 -1.1841 18 6 2.8975 -5.0806 -1.6228 19 6 3.9547 -5.1714 -2.6930 20 6 3.7413 -5.0675 -4.0714 21 7 4.8960 -5.1914 -4.6742 22 7 5.8807 -5.3876 -3.6974 23 1 6.8290 -5.5116 -3.8599 24 6 5.2780 -5.3679 -2.4901 25 1 -0.4849 0.8369 -0.0726 26 1 -0.0466 -1.3045 1.5605 27 1 -0.2879 -3.0656 1.4677 28 1 1.7029 -3.4140 2.9045 29 1 1.9441 -1.6529 2.9972 30 1 -0.0031 -2.4442 6.0026 31 1 3.6879 -3.2580 -0.7896 32 1 2.4442 -3.0162 -2.0398 33 1 1.9493 -5.4459 -2.0173 34 1 3.1931 -5.6876 -0.7671 35 1 2.7885 -4.9083 -4.5545 36 1 5.7646 -5.4878 -1.5335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:55 Heat of formation + Delta-G solvation = -58.828390 kcal Electronic energy + Delta-G solvation = -21628.240430 eV Core-core repulsion = 18114.074703 eV Total energy + Delta-G solvation = -3514.165727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01211 -39.81831 -38.55302 -35.82017 -35.04484 -33.39382 -31.92620 -31.18374 -30.65108 -28.56987 -25.23071 -24.65625 -22.74984 -21.80054 -20.45349 -19.72796 -19.04240 -17.76390 -17.57589 -16.69827 -16.10286 -15.84092 -15.39465 -14.69901 -14.53598 -14.41213 -14.20893 -14.03106 -13.21095 -13.04423 -12.73038 -12.60292 -12.27410 -11.87900 -11.66227 -11.39108 -11.25946 -11.14295 -11.03939 -10.70909 -10.57087 -10.39991 -10.15222 -10.12521 -10.02032 -9.52578 -9.21796 -8.55666 -8.19125 -7.58561 -6.41062 -4.08934 2.00655 2.67642 2.94391 3.00835 3.07104 3.19276 3.21930 3.42374 3.88151 4.10637 4.79304 4.92582 5.02188 5.03484 5.55694 5.62538 5.67789 5.80204 5.88554 5.96862 6.05631 6.17558 6.28029 6.34922 6.50762 6.75324 6.78605 6.83116 6.88397 6.93718 7.31684 7.35134 7.49933 7.75966 7.87705 8.29757 8.33840 9.03585 9.47009 9.90208 10.60607 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.004868 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.780762 B = 5750.535494 C = 6987.872123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.044 3.956 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.441 5.441 10 C 0.121 3.879 11 C -0.123 4.123 12 C 0.482 3.518 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.471 3.529 16 O -0.605 6.605 17 C -0.111 4.111 18 C -0.027 4.027 19 C -0.221 4.221 20 C 0.057 3.943 21 N -0.304 5.304 22 N -0.484 5.484 23 H 0.435 0.565 24 C 0.052 3.948 25 H 0.272 0.728 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.183 0.817 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -4.941 1.182 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.475 4.475 8 H 0.111 0.889 9 N -0.159 5.159 10 C -0.004 4.004 11 C -0.162 4.162 12 C 0.324 3.676 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.260 3.740 16 O -0.491 6.491 17 C -0.151 4.151 18 C -0.066 4.066 19 C -0.232 4.232 20 C -0.130 4.130 21 N -0.127 5.127 22 N -0.193 5.193 23 H 0.278 0.722 24 C -0.095 4.095 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.258 0.742 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.200 0.800 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.028 -5.252 -0.090 10.445 hybrid contribution 0.089 1.095 1.223 1.644 sum 9.116 -4.157 1.134 10.083 Atomic orbital electron populations 1.69862 1.06298 1.28042 1.44703 1.25372 0.95043 0.99895 0.95934 0.86132 0.80081 0.81968 0.78094 1.19108 1.20653 1.20496 1.19457 0.97920 0.85134 1.44966 0.88856 1.43424 1.39357 1.05902 1.27244 1.21220 0.91286 1.06038 0.81827 1.21855 0.98040 1.04888 0.91427 1.23808 0.89196 0.71400 0.83153 1.90702 1.19387 1.44899 1.85092 1.84594 1.46135 1.85318 1.17652 1.20582 0.85886 0.83805 0.83680 1.90532 1.54950 1.36922 1.66718 1.21347 0.98460 0.96580 0.98735 1.19665 0.95786 0.96348 0.94766 1.20361 0.94462 1.13296 0.95084 1.23888 0.96904 0.99078 0.93121 1.77266 0.97096 1.24173 1.14140 1.46238 1.09871 1.58993 1.04166 0.72178 1.22397 0.94021 1.02417 0.90662 0.91785 0.86434 0.91541 0.88659 0.87795 0.74162 0.90602 0.89540 0.90787 0.91360 0.80032 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.31 11.34 55.50 0.63 -21.68 16 2 C 0.04 1.08 4.95 -17.47 -0.09 1.00 16 3 Si 0.91 18.81 29.61 -169.99 -5.03 13.78 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.35 -8.31 8.73 -14.93 -0.13 -8.44 16 8 H 0.09 2.11 6.95 -52.49 -0.36 1.75 16 9 N -0.44 -10.54 2.54 -114.81 -0.29 -10.83 16 10 C 0.12 2.85 4.34 -4.04 -0.02 2.83 16 11 C -0.12 -2.38 6.14 -27.88 -0.17 -2.55 16 12 C 0.48 8.81 8.33 36.01 0.30 9.11 16 13 O -0.51 -10.98 16.74 -18.74 -0.31 -11.29 16 14 O -0.53 -7.43 13.42 -39.28 -0.53 -7.95 16 15 C 0.47 10.76 7.62 -10.99 -0.08 10.68 16 16 O -0.61 -15.13 15.54 5.54 0.09 -15.04 16 17 C -0.11 -2.05 4.31 -27.88 -0.12 -2.17 16 18 C -0.03 -0.42 4.99 -27.88 -0.14 -0.56 16 19 C -0.22 -3.10 5.35 -105.05 -0.56 -3.66 16 20 C 0.06 0.80 11.96 -17.36 -0.21 0.59 16 21 N -0.30 -4.32 12.70 30.63 0.39 -3.93 16 22 N -0.48 -5.47 7.36 30.44 0.22 -5.25 16 23 H 0.44 3.33 8.96 -182.61 -1.64 1.70 16 24 C 0.05 0.60 11.90 -17.22 -0.21 0.40 16 25 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 26 H 0.12 3.05 5.32 -51.93 -0.28 2.77 16 27 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 30 H 0.40 3.73 9.10 45.56 0.41 4.15 16 31 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 32 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 33 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 35 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -32.43 319.53 -6.18 -38.61 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.73 Total: 11.56 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.42 Total: 7.21 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.95 Total: -41.70 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.75 Total: -34.28 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.43 -6.18 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.221 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds