Wall clock time and date at job start Tue Mar 31 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46997 * 299.99967 * 3 2 1 6 6 H 1.48497 * 109.46834 * 60.00339 * 3 2 1 7 7 C 1.38954 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 157.24074 * 7 2 1 9 9 N 1.37099 * 120.00045 * 337.23678 * 7 2 1 10 10 C 1.46499 * 119.99810 * 325.33174 * 9 7 2 11 11 C 1.53002 * 109.46738 * 269.99496 * 10 9 7 12 12 C 1.50701 * 109.46663 * 180.02562 * 11 10 9 13 13 O 1.20819 * 120.00189 * 359.97438 * 12 11 10 14 14 O 1.34237 * 119.99567 * 180.02562 * 12 11 10 15 15 C 1.34773 * 119.99505 * 145.32776 * 9 7 2 16 16 O 1.21297 * 119.99600 * 184.88604 * 15 9 7 17 17 C 1.50696 * 120.00626 * 4.88763 * 15 9 7 18 18 C 1.53000 * 109.47286 * 177.73591 * 17 15 9 19 19 C 1.50708 * 109.46806 * 179.97438 * 18 17 15 20 20 C 1.39870 * 126.03858 * 269.99853 * 19 18 17 21 21 N 1.30841 * 108.19821 * 179.74664 * 20 19 18 22 22 N 1.40084 * 108.20669 * 0.39839 * 21 20 19 23 23 H 0.97002 * 126.03564 * 179.85104 * 22 21 20 24 24 C 1.34948 * 107.92527 * 359.59728 * 22 21 20 25 25 H 0.97000 * 119.99444 * 4.95714 * 1 2 3 26 26 H 1.08994 * 109.47464 * 29.99461 * 10 9 7 27 27 H 1.08998 * 109.46735 * 149.99767 * 10 9 7 28 28 H 1.08998 * 109.47549 * 299.99974 * 11 10 9 29 29 H 1.08998 * 109.47286 * 60.00609 * 11 10 9 30 30 H 0.96704 * 116.99539 * 179.97438 * 14 12 11 31 31 H 1.08998 * 109.46964 * 57.73394 * 17 15 9 32 32 H 1.09002 * 109.47029 * 297.73765 * 17 15 9 33 33 H 1.08998 * 109.47279 * 59.99997 * 18 17 15 34 34 H 1.09001 * 109.46862 * 299.99368 * 18 17 15 35 35 H 1.08001 * 125.89728 * 359.97438 * 20 19 18 36 36 H 1.07994 * 126.12777 * 180.21747 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0257 -1.2397 -0.3624 9 7 1.4034 -2.3447 0.4584 10 6 0.4533 -2.2731 1.5712 11 6 1.2030 -2.4455 2.8937 12 6 0.2256 -2.3724 4.0384 13 8 -0.9499 -2.1997 3.8190 14 8 0.6612 -2.4982 5.3019 15 6 1.6822 -3.5323 -0.1144 16 8 1.0819 -4.5281 0.2311 17 6 2.7398 -3.6233 -1.1841 18 6 2.8975 -5.0806 -1.6228 19 6 3.9547 -5.1714 -2.6930 20 6 3.7413 -5.0675 -4.0714 21 7 4.8960 -5.1914 -4.6742 22 7 5.8807 -5.3876 -3.6974 23 1 6.8290 -5.5116 -3.8599 24 6 5.2780 -5.3679 -2.4901 25 1 -0.4849 0.8369 -0.0726 26 1 -0.0466 -1.3045 1.5605 27 1 -0.2879 -3.0656 1.4677 28 1 1.7029 -3.4140 2.9045 29 1 1.9441 -1.6529 2.9972 30 1 -0.0031 -2.4442 6.0026 31 1 3.6879 -3.2580 -0.7896 32 1 2.4442 -3.0162 -2.0398 33 1 1.9493 -5.4459 -2.0173 34 1 3.1931 -5.6876 -0.7671 35 1 2.7885 -4.9083 -4.5545 36 1 5.7646 -5.4878 -1.5335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:55 Heat of formation + Delta-G solvation = -81.510997 kcal Electronic energy + Delta-G solvation = -21629.224022 eV Core-core repulsion = 18114.074703 eV Total energy + Delta-G solvation = -3515.149319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01173 -41.30577 -40.31290 -37.24530 -36.79645 -34.75311 -33.74129 -32.43439 -32.08610 -29.82073 -27.04864 -26.19805 -24.18745 -22.82290 -21.93203 -20.96324 -20.69550 -19.21844 -18.65376 -18.34511 -17.68917 -17.51664 -16.92681 -16.28437 -16.01486 -15.96546 -15.35165 -15.28814 -14.67601 -14.55286 -14.23882 -14.00340 -13.65217 -13.31606 -13.19820 -12.97703 -12.84943 -12.73028 -12.54790 -12.40837 -12.03181 -11.86120 -11.83970 -11.64154 -11.38076 -11.05289 -10.50966 -10.32319 -9.47135 -9.30874 -8.26008 -5.99539 1.05038 1.21039 1.43673 1.52041 1.63722 1.87039 1.99392 2.13393 2.17148 2.40313 3.09160 3.17656 3.94109 4.03484 4.16437 4.16809 4.34420 4.47058 4.52592 4.63163 4.75407 4.79400 4.86810 4.95103 5.04048 5.13801 5.40691 5.45201 5.50172 5.57594 5.64486 5.75879 6.04984 6.45464 6.53935 6.79544 7.01963 7.17342 7.64136 8.07257 8.76800 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.004868 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.780762 B = 5750.535494 C = 6987.872123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.249 1.249 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.352 4.352 8 H 0.110 0.890 9 N -0.452 5.452 10 C 0.124 3.876 11 C -0.114 4.114 12 C 0.493 3.507 13 O -0.551 6.551 14 O -0.507 6.507 15 C 0.459 3.541 16 O -0.633 6.633 17 C -0.099 4.099 18 C -0.011 4.011 19 C -0.249 4.249 20 C 0.045 3.955 21 N -0.331 5.331 22 N -0.471 5.471 23 H 0.452 0.548 24 C 0.074 3.926 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.426 0.574 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.189 0.811 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 -4.751 1.884 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.802 3.198 4 H -0.172 1.172 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.479 4.479 8 H 0.127 0.873 9 N -0.171 5.171 10 C -0.001 4.001 11 C -0.153 4.153 12 C 0.337 3.663 13 O -0.442 6.442 14 O -0.320 6.320 15 C 0.250 3.750 16 O -0.521 6.521 17 C -0.139 4.139 18 C -0.050 4.050 19 C -0.260 4.260 20 C -0.141 4.141 21 N -0.154 5.154 22 N -0.181 5.181 23 H 0.298 0.702 24 C -0.074 4.074 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.205 0.795 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.925 -5.075 0.625 12.975 hybrid contribution -0.794 0.963 1.058 1.636 sum 11.131 -4.112 1.683 11.985 Atomic orbital electron populations 1.70000 1.08104 1.28696 1.46467 1.26218 0.95528 1.03066 0.95469 0.85098 0.79661 0.77581 0.77431 1.17170 1.21114 1.20824 1.19841 0.98449 0.85083 1.44498 0.87258 1.43677 1.39250 1.06483 1.27656 1.20981 0.91458 1.03341 0.84312 1.21606 0.97864 1.05892 0.89927 1.23444 0.88095 0.70560 0.84202 1.90704 1.20797 1.46827 1.85882 1.84505 1.46639 1.84244 1.16637 1.21402 0.86413 0.83083 0.84068 1.90506 1.56154 1.37733 1.67691 1.21311 0.97462 0.98385 0.96700 1.19416 0.95820 0.94426 0.95363 1.20211 0.95128 1.16231 0.94424 1.24095 0.97396 0.99095 0.93468 1.77225 0.97584 1.25295 1.15315 1.46283 1.10488 1.57615 1.03678 0.70162 1.22874 0.93205 0.99447 0.91860 0.91985 0.88858 0.94702 0.87664 0.86418 0.71215 0.88747 0.90334 0.92645 0.91146 0.79459 0.77275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.91 11.34 21.66 0.25 -47.66 16 2 C 0.00 0.00 4.95 84.93 0.42 0.43 16 3 Si 0.98 37.93 29.61 68.60 2.03 39.96 16 4 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.35 -16.61 8.73 84.04 0.73 -15.87 16 8 H 0.11 4.73 6.95 -2.91 -0.02 4.71 16 9 N -0.45 -21.82 2.54 -635.55 -1.61 -23.43 16 10 C 0.12 6.01 4.34 86.38 0.37 6.38 16 11 C -0.11 -4.36 6.14 29.85 0.18 -4.18 16 12 C 0.49 17.65 8.33 71.24 0.59 18.24 16 13 O -0.55 -23.84 16.74 21.98 0.37 -23.47 16 14 O -0.51 -13.06 13.42 -51.49 -0.69 -13.76 16 15 C 0.46 21.13 7.62 87.66 0.67 21.80 16 16 O -0.63 -32.27 15.54 -3.08 -0.05 -32.32 16 17 C -0.10 -3.56 4.31 29.85 0.13 -3.43 16 18 C -0.01 -0.34 4.99 29.85 0.15 -0.20 16 19 C -0.25 -6.56 5.35 -20.14 -0.11 -6.67 16 20 C 0.05 1.23 11.96 85.24 1.02 2.25 16 21 N -0.33 -8.89 12.70 -57.02 -0.72 -9.61 16 22 N -0.47 -9.29 7.36 -57.59 -0.42 -9.71 16 23 H 0.45 5.47 8.96 -213.33 -1.91 3.55 16 24 C 0.07 1.49 11.90 83.54 0.99 2.48 16 25 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 26 H 0.09 5.03 5.32 -2.39 -0.01 5.02 16 27 H 0.03 1.86 7.32 -2.39 -0.02 1.84 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.43 6.73 9.10 -74.05 -0.67 6.05 16 31 H 0.09 3.04 7.68 -2.39 -0.02 3.02 16 32 H 0.08 2.96 8.09 -2.39 -0.02 2.94 16 33 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 35 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.37 319.53 2.85 -68.51 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -1.45 Total: 30.24 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 5.16 Total: 21.25 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -2.52 Total: -90.41 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -0.37 Total: -69.55 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -71.37 2.85 -68.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.997 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds