Wall clock time and date at job start Tue Mar 31 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99704 * 2 1 4 4 H 1.48496 * 109.46995 * 269.99844 * 3 2 1 5 5 H 1.48498 * 109.47303 * 30.00145 * 3 2 1 6 6 H 1.48502 * 109.47022 * 150.00197 * 3 2 1 7 7 C 1.38806 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00243 * 201.28350 * 7 2 1 9 9 N 1.36934 * 119.99873 * 21.28016 * 7 2 1 10 10 C 1.46504 * 120.00397 * 218.12561 * 9 7 2 11 11 C 1.52994 * 109.47262 * 270.00725 * 10 9 7 12 12 C 1.50706 * 109.47190 * 180.02562 * 11 10 9 13 13 O 1.20824 * 119.99582 * 359.97438 * 12 11 10 14 14 O 1.34221 * 120.00204 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99935 * 38.13080 * 9 7 2 16 16 C 1.53004 * 109.47048 * 84.50034 * 15 9 7 17 17 C 1.50702 * 109.46835 * 180.02562 * 16 15 9 18 18 C 1.38268 * 119.98968 * 270.24902 * 17 16 15 19 19 C 1.38224 * 120.05394 * 180.25681 * 18 17 16 20 20 C 1.38218 * 120.02320 * 359.49310 * 19 18 17 21 21 C 1.38442 * 119.97279 * 0.25748 * 20 19 18 22 22 F 1.35104 * 120.02428 * 179.97438 * 21 20 19 23 23 C 1.38183 * 119.98625 * 90.00104 * 17 16 15 24 24 H 0.97003 * 120.00045 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46632 * 30.00444 * 10 9 7 26 26 H 1.09001 * 109.46985 * 150.00091 * 10 9 7 27 27 H 1.09006 * 109.46911 * 299.99629 * 11 10 9 28 28 H 1.09001 * 109.47638 * 59.99766 * 11 10 9 29 29 H 0.96699 * 117.00301 * 179.97438 * 14 12 11 30 30 H 1.09000 * 109.47236 * 324.50044 * 15 9 7 31 31 H 1.09003 * 109.47474 * 204.49467 * 15 9 7 32 32 H 1.08996 * 109.47488 * 60.00227 * 16 15 9 33 33 H 1.09004 * 109.46839 * 299.99575 * 16 15 9 34 34 H 1.07997 * 119.97199 * 0.02562 * 18 17 16 35 35 H 1.07994 * 119.98864 * 179.76457 * 19 18 17 36 36 H 1.07998 * 120.01230 * 180.22886 * 20 19 18 37 37 H 1.08000 * 120.01401 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0350 -1.2341 0.3390 9 7 1.3956 -2.3473 -0.4314 10 6 1.6555 -3.6186 0.2487 11 6 2.8477 -4.3152 -0.4103 12 6 3.1146 -5.6233 0.2890 13 8 2.4225 -5.9631 1.2193 14 8 4.1210 -6.4107 -0.1216 15 6 0.4782 -2.3014 -1.5727 16 6 1.2772 -2.4024 -2.8737 17 6 0.3335 -2.3545 -4.0477 18 6 -0.2029 -3.5251 -4.5514 19 6 -1.0645 -3.4832 -5.6315 20 6 -1.3989 -2.2698 -6.2027 21 6 -0.8664 -1.0967 -5.6959 22 9 -1.1922 0.0899 -6.2538 23 6 0.0006 -1.1403 -4.6171 24 1 -0.4850 0.8401 -0.0004 25 1 1.8799 -3.4297 1.2985 26 1 0.7751 -4.2570 0.1745 27 1 2.6233 -4.5041 -1.4601 28 1 3.7281 -3.6769 -0.3360 29 1 4.2537 -7.2397 0.3581 30 1 -0.0739 -1.3617 -1.5575 31 1 -0.2213 -3.1350 -1.5104 32 1 1.8293 -3.3421 -2.8890 33 1 1.9767 -1.5688 -2.9361 34 1 0.0543 -4.4733 -4.1029 35 1 -1.4799 -4.3985 -6.0264 36 1 -2.0750 -2.2370 -7.0442 37 1 0.4169 -0.2257 -4.2213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:35 Heat of formation + Delta-G solvation = -106.166267 kcal Electronic energy + Delta-G solvation = -21601.414055 eV Core-core repulsion = 18065.275642 eV Total energy + Delta-G solvation = -3536.138413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.65764 -39.91273 -38.90454 -36.36897 -35.74569 -32.73980 -32.13599 -30.32545 -29.83097 -27.72275 -24.96722 -23.71041 -22.45467 -21.64224 -20.42511 -20.00959 -17.83612 -17.00597 -16.75823 -16.14256 -16.04247 -15.90828 -15.66905 -15.34612 -14.76175 -14.06320 -13.90935 -13.54601 -13.21826 -13.08139 -12.78017 -12.55794 -12.41357 -11.90102 -11.78834 -11.48048 -11.29948 -11.22276 -10.95771 -10.84012 -10.74745 -10.58580 -10.26764 -10.11732 -9.83695 -9.67309 -8.68597 -8.58323 -8.39739 -6.70746 -5.87304 -3.50037 1.41072 1.47757 2.52890 3.30758 3.35934 3.40282 3.42303 3.84495 4.40736 4.47837 4.94204 5.04337 5.21186 5.26783 5.41202 5.50695 5.57734 5.63107 5.66427 5.93866 5.95849 6.15961 6.19492 6.27900 6.39404 6.46115 6.53224 6.54316 6.64297 6.70524 6.77790 6.96546 7.08405 7.20086 7.61972 7.74705 8.16903 8.41750 9.07852 9.68600 10.26112 11.11462 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.006134 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.856319 B = 4563.410513 C = 6670.841091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.019 3.981 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.158 3.842 11 C -0.135 4.135 12 C 0.478 3.522 13 O -0.521 6.521 14 O -0.526 6.526 15 C 0.149 3.851 16 C -0.105 4.105 17 C -0.029 4.029 18 C -0.134 4.134 19 C -0.093 4.093 20 C -0.173 4.173 21 C 0.096 3.904 22 F -0.146 7.146 23 C -0.149 4.149 24 H 0.257 0.743 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.400 0.600 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -8.338 -9.024 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.183 4.183 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.296 5.296 10 C 0.030 3.970 11 C -0.175 4.175 12 C 0.321 3.679 13 O -0.409 6.409 14 O -0.337 6.337 15 C 0.022 3.978 16 C -0.144 4.144 17 C -0.030 4.030 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.192 4.192 21 C 0.077 3.923 22 F -0.125 7.125 23 C -0.168 4.168 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.258 0.742 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.397 -7.840 -8.941 11.974 hybrid contribution 0.489 0.538 0.076 0.731 sum 1.886 -7.303 -8.865 11.640 Atomic orbital electron populations 1.69980 1.05613 1.26005 1.50520 1.25207 0.94974 0.98809 0.99283 0.86410 0.79550 0.83608 0.77935 1.21119 1.21648 1.20133 1.19007 0.94272 0.85459 1.41323 0.91939 1.43792 1.52206 1.02863 1.30692 1.20691 0.92799 0.87828 0.95667 1.22442 1.04684 0.89123 1.01283 1.24172 0.76004 0.86098 0.81623 1.90685 1.47775 1.73694 1.28784 1.84621 1.52039 1.35263 1.61809 1.21008 0.91167 1.02721 0.82855 1.21477 0.97325 1.02094 0.93526 1.20067 0.96024 0.91661 0.95243 1.21124 0.98661 0.98365 0.97121 1.20911 0.97363 0.96886 0.95919 1.20983 1.03655 0.91702 1.02881 1.17747 0.98742 0.80742 0.95041 1.91469 1.91437 1.45083 1.84464 1.21149 0.99711 0.99817 0.96101 0.93321 0.92231 0.93756 0.88624 0.87979 0.74248 0.88437 0.95277 0.92263 0.90665 0.85695 0.85586 0.85493 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 11.43 55.49 0.63 -23.60 16 2 C 0.02 0.49 5.00 -17.43 -0.09 0.40 16 3 Si 0.90 20.64 29.60 -169.99 -5.03 15.60 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.27 -6.87 9.42 -15.06 -0.14 -7.01 16 8 H 0.06 1.57 7.92 -52.48 -0.42 1.16 16 9 N -0.58 -13.15 2.43 -173.24 -0.42 -13.57 16 10 C 0.16 3.16 5.00 -4.04 -0.02 3.14 16 11 C -0.13 -2.18 6.13 -27.88 -0.17 -2.35 16 12 C 0.48 7.37 8.33 36.01 0.30 7.67 16 13 O -0.52 -9.56 16.74 -18.75 -0.31 -9.88 16 14 O -0.53 -6.37 13.42 -39.24 -0.53 -6.90 16 15 C 0.15 3.18 5.36 -4.04 -0.02 3.16 16 16 C -0.10 -1.87 5.64 -27.88 -0.16 -2.02 16 17 C -0.03 -0.47 5.13 -104.63 -0.54 -1.01 16 18 C -0.13 -1.87 9.70 -39.58 -0.38 -2.26 16 19 C -0.09 -1.15 10.04 -39.59 -0.40 -1.55 16 20 C -0.17 -2.31 10.03 -39.51 -0.40 -2.71 16 21 C 0.10 1.51 7.30 -39.42 -0.29 1.22 16 22 F -0.15 -2.35 17.27 2.25 0.04 -2.31 16 23 C -0.15 -2.50 9.68 -39.51 -0.38 -2.89 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.06 1.29 8.00 -51.93 -0.42 0.88 16 26 H 0.04 0.89 7.81 -51.93 -0.41 0.48 16 27 H 0.10 1.42 6.66 -51.93 -0.35 1.08 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.40 3.02 9.10 45.56 0.41 3.44 16 30 H 0.10 2.43 5.53 -51.93 -0.29 2.14 16 31 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 32 H 0.06 0.95 6.60 -51.93 -0.34 0.61 16 33 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -29.55 325.20 -7.28 -36.83 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -3.87 Total: 5.12 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.68 Total: -6.19 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.21 Total: -37.17 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.84 Total: -16.77 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.55 -7.28 -36.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.338 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds