Wall clock time and date at job start Tue Mar 31 2020 05:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48505 * 109.47219 * 239.99887 * 3 2 1 5 5 H 1.48499 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46954 * 120.00122 * 3 2 1 7 7 C 1.38813 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99614 * 202.11714 * 7 2 1 9 9 N 1.36936 * 119.99820 * 22.11727 * 7 2 1 10 10 C 1.46501 * 119.99759 * 196.23587 * 9 7 2 11 11 C 1.53004 * 109.46764 * 269.99678 * 10 9 7 12 12 C 1.52998 * 109.46802 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46972 * 179.97438 * 12 11 10 14 14 C 1.38272 * 119.98953 * 269.72787 * 13 12 11 15 15 C 1.38216 * 120.05063 * 179.72222 * 14 13 12 16 16 C 1.38222 * 120.02863 * 0.55215 * 15 14 13 17 17 C 1.38432 * 119.97103 * 359.71720 * 16 15 14 18 18 F 1.35102 * 120.02500 * 180.02562 * 17 16 15 19 19 C 1.38175 * 119.98970 * 89.99973 * 13 12 11 20 20 C 1.46497 * 119.99907 * 16.22877 * 9 7 2 21 21 C 1.50706 * 109.47434 * 264.00702 * 20 9 7 22 22 O 1.20832 * 119.99384 * 0.02562 * 21 20 9 23 23 O 1.34222 * 120.00039 * 179.97438 * 21 20 9 24 24 H 0.97000 * 120.00174 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47258 * 29.99709 * 10 9 7 26 26 H 1.09000 * 109.47242 * 149.99916 * 10 9 7 27 27 H 1.08998 * 109.47259 * 300.00031 * 11 10 9 28 28 H 1.09000 * 109.47047 * 60.00119 * 11 10 9 29 29 H 1.08998 * 109.47436 * 299.99259 * 12 11 10 30 30 H 1.09000 * 109.47322 * 60.00166 * 12 11 10 31 31 H 1.08004 * 119.96965 * 359.97438 * 14 13 12 32 32 H 1.08005 * 119.98734 * 180.26871 * 15 14 13 33 33 H 1.07997 * 120.01283 * 179.74812 * 16 15 14 34 34 H 1.08000 * 120.00984 * 359.97438 * 19 13 12 35 35 H 1.08997 * 109.47350 * 24.01301 * 20 9 7 36 36 H 1.09003 * 109.46832 * 144.01217 * 20 9 7 37 37 H 0.96696 * 117.00038 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0306 -1.2366 0.3516 9 7 1.4011 -2.3442 -0.4476 10 6 1.9758 -3.6536 -0.1290 11 6 2.9638 -4.0572 -1.2254 12 6 3.5635 -5.4250 -0.8930 13 6 4.5362 -5.8228 -1.9732 14 6 4.0966 -6.5451 -3.0673 15 6 4.9865 -6.9057 -4.0615 16 6 6.3193 -6.5545 -3.9575 17 6 6.7616 -5.8362 -2.8599 18 9 8.0640 -5.4919 -2.7574 19 6 5.8681 -5.4706 -1.8671 20 6 0.1748 -2.2566 -1.2441 21 6 -1.0221 -2.4257 -0.3441 22 8 -0.8666 -2.6010 0.8413 23 8 -2.2608 -2.3807 -0.8591 24 1 -0.4850 0.8400 0.0004 25 1 2.4963 -3.5991 0.8271 26 1 1.1790 -4.3948 -0.0672 27 1 2.4433 -4.1117 -2.1815 28 1 3.7606 -3.3160 -1.2872 29 1 4.0841 -5.3709 0.0631 30 1 2.7665 -6.1660 -0.8315 31 1 3.0563 -6.8241 -3.1470 32 1 4.6412 -7.4661 -4.9178 33 1 7.0152 -6.8399 -4.7325 34 1 6.2120 -4.9099 -1.0106 35 1 0.1275 -1.2833 -1.7325 36 1 0.1753 -3.0425 -1.9995 37 1 -2.9970 -2.4939 -0.2425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:33 Heat of formation + Delta-G solvation = -100.282971 kcal Electronic energy + Delta-G solvation = -21413.563784 eV Core-core repulsion = 17877.680489 eV Total energy + Delta-G solvation = -3535.883294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.92561 -39.24683 -38.69451 -36.18651 -34.58628 -33.85546 -31.54111 -30.60864 -29.65830 -27.33054 -25.70767 -23.19083 -22.73886 -21.49101 -20.72068 -19.80492 -17.29753 -16.86445 -16.65106 -16.37838 -16.19996 -15.62480 -15.21364 -15.07324 -14.46335 -14.14501 -14.03520 -13.64370 -13.39328 -13.35059 -12.86391 -12.70229 -12.08999 -11.84718 -11.56576 -11.47345 -11.23537 -11.07899 -10.86307 -10.74108 -10.61874 -10.31911 -10.09448 -9.94147 -9.85402 -9.21346 -8.97289 -8.70138 -8.53251 -7.04375 -5.92687 -3.24988 1.11567 1.16390 3.36418 3.42645 3.43817 3.53490 3.88786 4.18053 4.33401 4.55838 4.64741 4.73954 4.97656 5.14590 5.24790 5.29968 5.35947 5.42985 5.67382 5.82171 5.92336 6.01197 6.06828 6.10767 6.20982 6.30769 6.40516 6.43777 6.51008 6.80353 6.84837 6.87848 7.01647 7.07883 7.69206 7.85208 8.19661 9.02451 9.42966 9.71961 10.14552 11.18621 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.004186 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.630065 B = 6687.969305 C = 7817.749327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.909 3.091 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.079 0.921 9 N -0.568 5.568 10 C 0.149 3.851 11 C -0.130 4.130 12 C -0.084 4.084 13 C -0.039 4.039 14 C -0.130 4.130 15 C -0.090 4.090 16 C -0.167 4.167 17 C 0.098 3.902 18 F -0.144 7.144 19 C -0.152 4.152 20 C 0.190 3.810 21 C 0.476 3.524 22 O -0.517 6.517 23 O -0.544 6.544 24 H 0.257 0.743 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -12.892 -7.614 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.738 3.262 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.097 0.903 9 N -0.287 5.287 10 C 0.022 3.978 11 C -0.170 4.170 12 C -0.122 4.122 13 C -0.039 4.039 14 C -0.148 4.148 15 C -0.108 4.108 16 C -0.186 4.186 17 C 0.078 3.922 18 F -0.122 7.122 19 C -0.171 4.171 20 C 0.060 3.940 21 C 0.316 3.684 22 O -0.403 6.403 23 O -0.355 6.355 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.069 0.931 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.699 -12.711 -7.516 16.215 hybrid contribution 0.078 1.057 0.613 1.224 sum 6.778 -11.654 -6.903 15.146 Atomic orbital electron populations 1.69855 1.05294 1.25973 1.53902 1.24837 0.95212 0.98560 1.01145 0.86258 0.78856 0.82930 0.78133 1.20939 1.21665 1.20947 1.19235 0.95366 0.84973 1.38806 0.90288 1.43949 1.23619 1.01762 1.59418 1.20812 0.94400 0.87190 0.95355 1.22198 1.00081 0.93828 1.00859 1.20706 0.96791 0.98768 0.95901 1.19927 0.93324 0.94578 0.96053 1.21166 1.00196 0.99421 0.94011 1.20977 0.92263 0.98838 0.98740 1.21073 0.97357 1.02024 0.98175 1.17726 0.78282 0.99573 0.96570 1.91487 1.33947 1.90520 1.96264 1.21098 0.93214 1.03076 0.99731 1.20238 0.81290 1.02308 0.90147 1.25415 0.83138 0.69891 0.89965 1.90505 1.85876 1.45820 1.18114 1.84638 1.17825 1.86429 1.46575 0.93225 0.93081 0.94445 0.92412 0.91615 0.90800 0.90821 0.85304 0.85242 0.85186 0.84712 0.86954 0.93134 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.63 9.31 55.49 0.52 -25.12 16 2 C 0.00 0.01 4.86 -17.43 -0.08 -0.08 16 3 Si 0.91 21.47 29.61 -169.99 -5.03 16.43 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.75 9.66 -15.06 -0.15 -6.89 16 8 H 0.08 2.04 7.92 -52.49 -0.42 1.63 16 9 N -0.57 -13.58 2.03 -174.60 -0.35 -13.93 16 10 C 0.15 2.92 5.64 -4.04 -0.02 2.90 16 11 C -0.13 -2.06 5.52 -26.73 -0.15 -2.20 16 12 C -0.08 -1.05 5.35 -27.88 -0.15 -1.20 16 13 C -0.04 -0.47 5.13 -104.63 -0.54 -1.01 16 14 C -0.13 -1.40 9.70 -39.58 -0.38 -1.78 16 15 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 16 C -0.17 -1.78 10.03 -39.52 -0.40 -2.17 16 17 C 0.10 1.21 7.30 -39.42 -0.29 0.92 16 18 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 19 C -0.15 -1.91 9.68 -39.52 -0.38 -2.29 16 20 C 0.19 4.37 5.49 -5.19 -0.03 4.34 16 21 C 0.48 11.41 6.55 36.01 0.24 11.64 16 22 O -0.52 -14.17 16.89 -18.75 -0.32 -14.49 16 23 O -0.54 -11.01 13.42 -39.24 -0.53 -11.54 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 26 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 2.80 6.35 -51.93 -0.33 2.47 16 36 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 37 H 0.38 6.11 9.10 45.56 0.41 6.53 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -31.96 325.39 -7.60 -39.56 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.10 Total: 5.12 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.73 Total: 0.90 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.16 Total: -39.05 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.84 Total: -26.03 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.96 -7.60 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.725 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds