Wall clock time and date at job start Tue Mar 31 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47108 * 120.00233 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47538 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99810 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.40196 * 119.99790 * 179.72966 * 15 13 12 17 17 C 1.39783 * 125.68121 * 359.97438 * 16 15 13 18 18 C 1.38023 * 107.63114 * 180.02562 * 17 16 15 19 19 C 1.47013 * 126.43095 * 180.02562 * 18 17 16 20 20 O 1.21555 * 120.00273 * 359.97438 * 19 18 17 21 21 O 1.34815 * 120.00105 * 180.02562 * 19 18 17 22 22 N 1.36737 * 107.13393 * 0.02562 * 18 17 16 23 23 H 0.97003 * 126.08251 * 180.02562 * 22 18 17 24 24 N 1.31336 * 125.68112 * 179.69496 * 16 15 13 25 25 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47662 * 59.99564 * 9 7 2 27 27 H 1.09007 * 109.46937 * 299.99487 * 9 7 2 28 28 H 1.08995 * 109.46963 * 59.99398 * 10 9 7 29 29 H 1.09007 * 109.46376 * 299.99571 * 10 9 7 30 30 H 1.08995 * 109.47672 * 59.99933 * 11 10 9 31 31 H 1.08998 * 109.47443 * 299.99388 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97001 * 120.00485 * 359.71840 * 15 13 12 35 35 H 1.08003 * 126.18483 * 359.97438 * 17 16 15 36 36 H 0.96697 * 117.00385 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 6 2.4748 -6.1500 -0.0024 13 6 1.7213 -7.4551 -0.0023 14 8 0.5084 -7.4551 -0.0015 15 7 2.3953 -8.6222 0.0031 16 6 1.6944 -9.8364 0.0089 17 6 0.3034 -9.9748 0.0103 18 6 0.0177 -11.3251 0.0171 19 6 -1.3202 -11.9344 0.0203 20 8 -2.3096 -11.2283 0.0173 21 8 -1.4498 -13.2763 0.0275 22 7 1.2127 -11.9897 0.0203 23 1 1.3310 -12.9525 0.0248 24 7 2.2353 -11.0332 0.0088 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 2.8715 -3.6046 0.8890 29 1 2.8727 -3.6038 -0.8911 30 1 0.8542 -5.0447 -0.8922 31 1 0.8535 -5.0450 0.8877 32 1 3.1015 -6.0924 0.8877 33 1 3.1015 -6.0918 -0.8923 34 1 3.3653 -8.6222 0.0028 35 1 -0.4174 -9.1706 0.0075 36 1 -2.3496 -13.6305 0.0289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:59 Heat of formation + Delta-G solvation = -66.228532 kcal Electronic energy + Delta-G solvation = -20419.681157 eV Core-core repulsion = 16905.194536 eV Total energy + Delta-G solvation = -3514.486621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90349 -40.37883 -39.63071 -36.65978 -35.32633 -34.85733 -32.68703 -31.31497 -30.72627 -29.54728 -25.86508 -25.27092 -23.18227 -21.55503 -21.25862 -20.15066 -20.00013 -19.24784 -18.13053 -17.27789 -16.56636 -16.45046 -16.10530 -15.94859 -15.42494 -14.93810 -14.49243 -14.13856 -14.00002 -13.86207 -13.77190 -12.65056 -12.40627 -12.16526 -11.75364 -11.68038 -11.63224 -11.41260 -11.10621 -10.98062 -10.56217 -10.54102 -10.43669 -9.98875 -9.62255 -9.44781 -9.25096 -9.00473 -8.83277 -8.29606 -5.94447 -3.97151 0.43146 1.76433 1.85672 2.22252 2.42967 2.83682 2.99331 3.36069 3.40652 3.42661 4.38438 4.47737 4.49795 4.64625 4.99873 5.14449 5.23635 5.26641 5.40860 5.73315 5.80544 5.85462 6.08934 6.23434 6.37092 6.44814 6.51216 6.79146 6.80589 6.98834 7.18911 7.26020 7.36106 7.74194 7.89963 7.91528 8.06688 8.48092 9.10411 9.66530 11.16812 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.002398 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.228111 B =11671.631099 C =12371.786160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.106 4.106 12 C -0.132 4.132 13 C 0.520 3.480 14 O -0.504 6.504 15 N -0.642 5.642 16 C 0.299 3.701 17 C -0.168 4.168 18 C 0.048 3.952 19 C 0.554 3.446 20 O -0.481 6.481 21 O -0.516 6.516 22 N -0.441 5.441 23 H 0.450 0.550 24 N -0.284 5.284 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.419 0.581 35 H 0.191 0.809 36 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -28.079 0.041 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.172 4.172 13 C 0.309 3.691 14 O -0.376 6.376 15 N -0.292 5.292 16 C 0.045 3.955 17 C -0.199 4.199 18 C -0.080 4.080 19 C 0.394 3.606 20 O -0.365 6.365 21 O -0.330 6.330 22 N -0.158 5.158 23 H 0.297 0.703 24 N -0.119 5.119 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.256 0.744 35 H 0.208 0.792 36 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.622 -28.120 0.039 28.352 hybrid contribution -0.225 0.471 0.000 0.522 sum 3.397 -27.649 0.039 27.856 Atomic orbital electron populations 1.69960 1.06045 1.26650 1.50792 1.25040 0.94840 0.99226 0.95455 0.86671 0.79571 0.83274 0.78539 1.20289 1.21341 1.20295 1.21237 0.92942 0.91200 1.50584 0.92796 1.19095 0.94051 0.91224 0.97375 1.21650 0.99117 0.93819 1.00212 1.21511 0.96996 0.92530 1.03329 1.21831 1.00232 0.90364 1.04812 1.21482 0.88608 0.84698 0.74356 1.90665 1.14097 1.86681 1.46150 1.43094 1.10799 1.01678 1.73677 1.19000 0.90673 0.86618 0.99245 1.22400 0.95330 0.94508 1.07702 1.20123 0.84927 0.92491 1.10455 1.19414 0.87619 0.80318 0.73255 1.91031 1.38213 1.62923 1.44367 1.84520 1.39652 1.22727 1.86070 1.46233 1.01574 1.08792 1.59229 0.70268 1.77310 1.10564 0.96038 1.27979 0.92968 0.96542 0.96547 0.93349 0.93346 0.91485 0.91478 0.88308 0.88309 0.74381 0.79172 0.71670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.13 -1.52 5.70 -27.88 -0.16 -1.68 16 13 C 0.52 6.51 7.80 -10.98 -0.09 6.43 16 14 O -0.50 -8.19 13.08 5.55 0.07 -8.12 16 15 N -0.64 -6.47 5.45 -11.25 -0.06 -6.53 16 16 C 0.30 3.50 8.07 -154.49 -1.25 2.25 16 17 C -0.17 -2.13 9.41 -39.08 -0.37 -2.50 16 18 C 0.05 0.49 7.16 -82.20 -0.59 -0.10 16 19 C 0.55 5.14 8.32 34.29 0.29 5.43 16 20 O -0.48 -6.14 17.68 -19.31 -0.34 -6.48 16 21 O -0.52 -2.61 13.44 -40.81 -0.55 -3.16 16 22 N -0.44 -3.74 7.44 33.40 0.25 -3.49 16 23 H 0.45 2.29 8.96 -182.65 -1.64 0.66 16 24 N -0.28 -2.99 12.68 31.34 0.40 -2.60 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.42 2.84 8.82 -40.82 -0.36 2.48 16 35 H 0.19 2.83 5.88 -52.48 -0.31 2.52 16 36 H 0.42 0.29 9.11 45.56 0.42 0.70 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -36.41 323.46 -7.42 -43.84 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.81 Total: -0.85 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.97 Total: -7.60 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.32 Total: -39.26 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.82 Total: -17.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.41 -7.42 -43.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.392 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds