Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47108 * 120.00233 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47538 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99810 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.40196 * 119.99790 * 179.72966 * 15 13 12 17 17 C 1.39783 * 125.68121 * 359.97438 * 16 15 13 18 18 C 1.38023 * 107.63114 * 180.02562 * 17 16 15 19 19 C 1.47013 * 126.43095 * 180.02562 * 18 17 16 20 20 O 1.21555 * 120.00273 * 359.97438 * 19 18 17 21 21 O 1.34815 * 120.00105 * 180.02562 * 19 18 17 22 22 N 1.36737 * 107.13393 * 0.02562 * 18 17 16 23 23 H 0.97003 * 126.08251 * 180.02562 * 22 18 17 24 24 N 1.31336 * 125.68112 * 179.69496 * 16 15 13 25 25 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47662 * 59.99564 * 9 7 2 27 27 H 1.09007 * 109.46937 * 299.99487 * 9 7 2 28 28 H 1.08995 * 109.46963 * 59.99398 * 10 9 7 29 29 H 1.09007 * 109.46376 * 299.99571 * 10 9 7 30 30 H 1.08995 * 109.47672 * 59.99933 * 11 10 9 31 31 H 1.08998 * 109.47443 * 299.99388 * 11 10 9 32 32 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 33 33 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 34 34 H 0.97001 * 120.00485 * 359.71840 * 15 13 12 35 35 H 1.08003 * 126.18483 * 359.97438 * 17 16 15 36 36 H 0.96697 * 117.00385 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 6 2.4748 -6.1500 -0.0024 13 6 1.7213 -7.4551 -0.0023 14 8 0.5084 -7.4551 -0.0015 15 7 2.3953 -8.6222 0.0031 16 6 1.6944 -9.8364 0.0089 17 6 0.3034 -9.9748 0.0103 18 6 0.0177 -11.3251 0.0171 19 6 -1.3202 -11.9344 0.0203 20 8 -2.3096 -11.2283 0.0173 21 8 -1.4498 -13.2763 0.0275 22 7 1.2127 -11.9897 0.0203 23 1 1.3310 -12.9525 0.0248 24 7 2.2353 -11.0332 0.0088 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 2.8715 -3.6046 0.8890 29 1 2.8727 -3.6038 -0.8911 30 1 0.8542 -5.0447 -0.8922 31 1 0.8535 -5.0450 0.8877 32 1 3.1015 -6.0924 0.8877 33 1 3.1015 -6.0918 -0.8923 34 1 3.3653 -8.6222 0.0028 35 1 -0.4174 -9.1706 0.0075 36 1 -2.3496 -13.6305 0.0289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -93.910042 kcal Electronic energy + Delta-G solvation = -20420.881518 eV Core-core repulsion = 16905.194536 eV Total energy + Delta-G solvation = -3515.686982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.73704 -41.18836 -40.54625 -37.31746 -36.70651 -36.04046 -34.60607 -32.33283 -31.69246 -30.98490 -27.57190 -26.05552 -24.73157 -22.65253 -22.25563 -21.55783 -21.06984 -19.98413 -18.83148 -18.39269 -18.18980 -17.40850 -17.26434 -16.92219 -16.50393 -16.22087 -15.95723 -15.25101 -15.19169 -14.75551 -14.54050 -14.50413 -13.80654 -13.57861 -13.26500 -12.83043 -12.77635 -12.52443 -12.36224 -12.33711 -12.11996 -12.08415 -11.95257 -11.30849 -11.30742 -11.14169 -10.86394 -10.51225 -10.30617 -9.68422 -8.15803 -6.27643 -0.38339 0.85543 1.07792 1.42342 1.46153 1.52623 1.53936 1.60996 1.93181 2.23010 2.44340 3.17014 3.56062 3.65306 3.82190 3.99671 4.21081 4.23847 4.37734 4.67298 4.73806 4.87403 4.90817 4.95385 5.24522 5.30400 5.38247 5.42113 5.47206 5.61932 5.67986 5.83812 5.92897 6.13523 6.28951 6.52896 6.72363 6.91484 7.02695 7.41927 8.96170 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038283 B = 0.002398 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.228111 B =11671.631099 C =12371.786160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.119 4.119 13 C 0.522 3.478 14 O -0.550 6.550 15 N -0.624 5.624 16 C 0.288 3.712 17 C -0.203 4.203 18 C 0.057 3.943 19 C 0.566 3.434 20 O -0.522 6.522 21 O -0.495 6.495 22 N -0.417 5.417 23 H 0.467 0.533 24 N -0.281 5.281 25 H 0.262 0.738 26 H -0.015 1.015 27 H -0.016 1.016 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.437 0.563 35 H 0.163 0.837 36 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -29.543 0.046 30.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.138 4.138 12 C -0.159 4.159 13 C 0.311 3.689 14 O -0.425 6.425 15 N -0.276 5.276 16 C 0.034 3.966 17 C -0.235 4.235 18 C -0.073 4.073 19 C 0.407 3.593 20 O -0.409 6.409 21 O -0.310 6.310 22 N -0.136 5.136 23 H 0.318 0.682 24 N -0.117 5.117 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.277 0.723 35 H 0.181 0.819 36 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 6.421 -29.669 0.044 30.356 hybrid contribution -1.137 0.771 -0.001 1.373 sum 5.284 -28.898 0.043 29.378 Atomic orbital electron populations 1.70125 1.08062 1.27747 1.51990 1.26087 0.95761 1.03722 0.94922 0.85457 0.78165 0.77816 0.79340 1.18904 1.21272 1.18915 1.21749 0.93788 0.92254 1.50057 0.91477 1.19072 0.94774 0.93833 0.94343 1.21442 0.97785 0.92550 1.01562 1.21295 0.97547 0.93424 1.01504 1.21698 0.98907 0.87358 1.07888 1.21615 0.88018 0.85600 0.73630 1.90682 1.16123 1.87299 1.48358 1.42826 1.11542 1.00666 1.72593 1.19060 0.90390 0.87278 0.99860 1.22229 0.95722 0.95134 1.10406 1.20099 0.85900 0.92016 1.09237 1.19213 0.86553 0.81267 0.72218 1.91028 1.39286 1.64192 1.46395 1.84474 1.41645 1.19996 1.84898 1.46249 1.00601 1.09442 1.57264 0.68229 1.77284 1.10813 0.95725 1.27836 0.92925 0.99702 0.99712 0.91849 0.91840 0.93478 0.93480 0.85147 0.85146 0.72261 0.81914 0.69064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.91 4.97 29.85 0.15 1.06 16 10 C -0.10 -3.70 5.15 30.59 0.16 -3.55 16 11 C -0.10 -3.30 4.50 30.59 0.14 -3.16 16 12 C -0.12 -2.48 5.70 29.85 0.17 -2.31 16 13 C 0.52 12.76 7.80 87.66 0.68 13.44 16 14 O -0.55 -18.68 13.08 -3.07 -0.04 -18.72 16 15 N -0.62 -11.68 5.45 -307.89 -1.68 -13.36 16 16 C 0.29 6.49 8.07 133.12 1.07 7.57 16 17 C -0.20 -5.28 9.41 22.59 0.21 -5.07 16 18 C 0.06 1.14 7.16 40.63 0.29 1.43 16 19 C 0.57 10.04 8.32 70.12 0.58 10.63 16 20 O -0.52 -13.54 17.68 19.66 0.35 -13.20 16 21 O -0.49 -3.81 13.44 -57.27 -0.77 -4.58 16 22 N -0.42 -6.22 7.44 -48.25 -0.36 -6.58 16 23 H 0.47 3.42 8.96 -213.36 -1.91 1.51 16 24 N -0.28 -5.39 12.68 -54.77 -0.69 -6.09 16 25 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 26 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 32 H 0.13 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.44 4.73 8.82 -92.71 -0.82 3.91 16 35 H 0.16 5.26 5.88 -2.91 -0.02 5.24 16 36 H 0.45 -0.57 9.11 -74.06 -0.67 -1.24 16 Total: -1.00 -82.80 323.46 1.02 -81.78 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -2.25 Total: 3.57 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.15 Total: -10.69 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.45 Total: -84.80 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.46 Total: -36.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -82.80 1.02 -81.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.127 kcal (2) G-P(sol) polarization free energy of solvation -82.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds