Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97284 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47197 * 19.97622 * 5 4 3 7 7 N 1.46905 * 109.47037 * 139.98052 * 5 4 3 8 8 C 1.46903 * 110.99792 * 204.99825 * 7 5 4 9 9 C 1.53003 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.46939 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00032 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99797 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00227 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00000 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47231 * 90.00448 * 14 12 10 16 16 H 1.48502 * 109.47324 * 210.00433 * 14 12 10 17 17 H 1.48497 * 109.47039 * 330.00429 * 14 12 10 18 18 C 1.50706 * 109.47095 * 259.97499 * 5 4 3 19 19 O 1.20821 * 119.99946 * 239.99827 * 18 5 4 20 20 O 1.34224 * 119.99698 * 60.00182 * 18 5 4 21 21 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 22 22 C 1.38168 * 120.03012 * 0.02562 * 21 4 3 23 23 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 24 24 F 1.35102 * 120.02757 * 0.24616 * 23 2 1 25 25 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 26 26 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 27 27 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 28 28 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 29 29 H 1.00895 * 111.00269 * 81.04568 * 7 5 4 30 30 H 1.09003 * 109.47170 * 300.00230 * 8 7 5 31 31 H 1.09008 * 109.47101 * 59.99768 * 8 7 5 32 32 H 1.08997 * 109.47006 * 300.00439 * 9 8 7 33 33 H 1.09000 * 109.46753 * 59.99977 * 9 8 7 34 34 H 0.97004 * 119.99701 * 180.02562 * 13 12 10 35 35 H 0.96704 * 116.99989 * 179.97438 * 20 18 5 36 36 H 1.08002 * 119.98387 * 179.97438 * 21 4 3 37 37 H 1.08001 * 120.02005 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.6781 3.2995 0.3519 7 7 5.4971 2.3965 0.8902 8 6 5.9017 3.7183 1.3875 9 6 7.1134 3.5673 2.3094 10 6 7.5288 4.9233 2.8191 11 1 6.9830 5.8045 2.5161 12 6 8.6051 5.0386 3.6730 13 7 9.2695 3.9654 4.0423 14 14 9.1197 6.7194 4.3053 15 1 8.4011 7.0133 5.5712 16 1 10.5838 6.7279 4.5538 17 1 8.7834 7.7531 3.2937 18 6 4.7979 2.8153 -1.3991 19 8 5.9774 2.9372 -1.6308 20 8 3.9013 2.9583 -2.3877 21 6 4.2732 0.0004 -0.0005 22 6 3.5842 -1.1973 -0.0005 23 6 2.1994 -1.1988 -0.0005 24 9 1.5247 -2.3693 -0.0061 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3633 0.8905 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 1.6585 2.1322 0.0004 29 1 6.2651 1.9336 0.4277 30 1 6.1630 4.3590 0.5453 31 1 5.0770 4.1659 1.9422 32 1 6.8516 2.9267 3.1515 33 1 7.9382 3.1195 1.7550 34 1 10.0265 4.0467 4.6434 35 1 4.2470 3.1588 -3.2683 36 1 5.3532 0.0018 -0.0014 37 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607613471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = -122.989173 kcal Electronic energy + Delta-G solvation = -21366.310863 eV Core-core repulsion = 17829.442954 eV Total energy + Delta-G solvation = -3536.867909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.99704 -40.67337 -39.14439 -36.63017 -35.59544 -33.46761 -32.72847 -31.53677 -29.14644 -27.10675 -26.46570 -23.93798 -22.83010 -22.20152 -20.69476 -20.26308 -18.12870 -17.64979 -17.09766 -16.68943 -16.27060 -16.17453 -15.76889 -15.06303 -14.51288 -14.34950 -14.08034 -13.84010 -13.61818 -13.38029 -13.29975 -12.95279 -12.83286 -12.28598 -12.14076 -11.96821 -11.68849 -11.48281 -11.18873 -11.08119 -10.94229 -10.75120 -10.56687 -10.12606 -9.48418 -9.19711 -9.01817 -8.59543 -8.39995 -8.22397 -6.00674 -4.03430 0.97382 1.12947 2.15265 2.97263 3.32027 3.38112 3.41124 3.48208 4.14318 4.28710 4.46672 4.56323 4.64252 4.66278 5.04131 5.07554 5.22166 5.27108 5.35653 5.39076 5.42741 5.61924 5.83396 5.90219 6.08005 6.13167 6.16672 6.29231 6.37418 6.43459 6.76632 6.87493 7.15632 7.54610 7.69515 7.82983 7.85369 8.02466 8.39622 9.02977 9.60324 11.10778 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.693426 B = 7818.635174 C = 8307.904438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.072 4.072 5 C 0.137 3.863 6 H 0.124 0.876 7 N -0.654 5.654 8 C 0.059 3.941 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.452 3.548 19 O -0.505 6.505 20 O -0.516 6.516 21 C -0.068 4.068 22 C -0.150 4.150 23 C 0.095 3.905 24 F -0.141 7.141 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.351 0.649 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.404 0.596 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.727 -8.080 -11.571 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.073 4.073 5 C 0.024 3.976 6 H 0.141 0.859 7 N -0.286 5.286 8 C -0.068 4.068 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.291 3.709 19 O -0.392 6.392 20 O -0.326 6.326 21 C -0.086 4.086 22 C -0.169 4.169 23 C 0.076 3.924 24 F -0.120 7.120 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.262 0.738 36 H 0.153 0.847 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.776 -8.376 -10.575 21.527 hybrid contribution 1.046 1.212 -0.961 1.868 sum -15.730 -7.164 -11.536 20.781 Atomic orbital electron populations 1.20706 0.90144 1.03190 1.02834 1.19831 0.96939 0.91728 1.03802 1.20736 0.92875 0.97345 0.98112 1.19396 0.93160 0.93487 1.01292 1.20351 0.96371 0.96614 0.84287 0.85860 1.61118 1.08756 1.23579 1.35144 1.22366 1.00365 0.86195 0.97895 1.19047 0.90593 0.97365 0.94034 1.21125 1.13848 0.93049 1.28061 0.92727 1.24990 0.96364 0.96624 0.96313 1.69971 1.20412 1.28112 1.34636 0.86576 0.77715 0.84383 0.79208 1.20611 1.21206 1.19926 1.25045 0.84628 0.72427 0.88812 1.90767 1.18702 1.46274 1.83413 1.84594 1.43426 1.82876 1.21715 1.20860 1.00693 0.90672 0.96417 1.21097 0.92115 0.99767 1.03875 1.17566 0.90063 0.80838 1.03967 1.91465 1.80441 1.46100 1.93971 0.90785 0.90904 0.91360 0.84752 0.82773 0.95598 0.91819 0.95471 0.96500 0.92950 0.73802 0.84705 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.84 36.00 0.35 -0.55 16 2 C -0.12 -1.30 5.89 -104.56 -0.62 -1.92 16 3 C -0.07 -0.78 9.32 -39.59 -0.37 -1.15 16 4 C -0.07 -0.89 4.88 -104.62 -0.51 -1.40 16 5 C 0.14 1.87 2.70 -70.01 -0.19 1.68 16 6 H 0.12 1.53 7.66 -51.93 -0.40 1.13 16 7 N -0.65 -11.18 5.55 -109.17 -0.61 -11.79 16 8 C 0.06 1.22 5.32 -3.82 -0.02 1.20 16 9 C 0.03 0.70 5.23 -27.88 -0.15 0.55 16 10 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.45 6.27 7.44 36.01 0.27 6.54 16 19 O -0.50 -8.77 16.06 -18.75 -0.30 -9.07 16 20 O -0.52 -5.43 13.34 -39.24 -0.52 -5.95 16 21 C -0.07 -0.84 9.32 -39.60 -0.37 -1.21 16 22 C -0.15 -1.71 10.03 -39.52 -0.40 -2.11 16 23 C 0.09 1.11 7.24 -39.42 -0.29 0.82 16 24 F -0.14 -1.67 16.48 2.25 0.04 -1.63 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.07 0.54 7.64 -51.93 -0.40 0.14 16 28 H 0.13 1.16 8.04 -52.49 -0.42 0.74 16 29 H 0.35 6.18 7.09 -39.29 -0.28 5.90 16 30 H 0.03 0.55 7.62 -51.93 -0.40 0.15 16 31 H 0.06 1.25 8.06 -51.92 -0.42 0.84 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.40 2.66 9.10 45.56 0.41 3.08 16 36 H 0.14 1.65 7.24 -52.49 -0.38 1.27 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -32.73 326.42 -7.38 -40.10 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.93 Total: 3.96 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -2.69 Total: -11.05 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.13 Total: -37.94 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.82 Total: -15.02 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.73 -7.38 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607613471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.887 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds