Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97284 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47197 * 19.97622 * 5 4 3 7 7 N 1.46905 * 109.47037 * 139.98052 * 5 4 3 8 8 C 1.46903 * 110.99792 * 204.99825 * 7 5 4 9 9 C 1.53003 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.46939 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00032 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99797 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00227 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00000 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47231 * 90.00448 * 14 12 10 16 16 H 1.48502 * 109.47324 * 210.00433 * 14 12 10 17 17 H 1.48497 * 109.47039 * 330.00429 * 14 12 10 18 18 C 1.50706 * 109.47095 * 259.97499 * 5 4 3 19 19 O 1.20821 * 119.99946 * 239.99827 * 18 5 4 20 20 O 1.34224 * 119.99698 * 60.00182 * 18 5 4 21 21 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 22 22 C 1.38168 * 120.03012 * 0.02562 * 21 4 3 23 23 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 24 24 F 1.35102 * 120.02757 * 0.24616 * 23 2 1 25 25 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 26 26 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 27 27 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 28 28 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 29 29 H 1.00895 * 111.00269 * 81.04568 * 7 5 4 30 30 H 1.09003 * 109.47170 * 300.00230 * 8 7 5 31 31 H 1.09008 * 109.47101 * 59.99768 * 8 7 5 32 32 H 1.08997 * 109.47006 * 300.00439 * 9 8 7 33 33 H 1.09000 * 109.46753 * 59.99977 * 9 8 7 34 34 H 0.97004 * 119.99701 * 180.02562 * 13 12 10 35 35 H 0.96704 * 116.99989 * 179.97438 * 20 18 5 36 36 H 1.08002 * 119.98387 * 179.97438 * 21 4 3 37 37 H 1.08001 * 120.02005 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.6781 3.2995 0.3519 7 7 5.4971 2.3965 0.8902 8 6 5.9017 3.7183 1.3875 9 6 7.1134 3.5673 2.3094 10 6 7.5288 4.9233 2.8191 11 1 6.9830 5.8045 2.5161 12 6 8.6051 5.0386 3.6730 13 7 9.2695 3.9654 4.0423 14 14 9.1197 6.7194 4.3053 15 1 8.4011 7.0133 5.5712 16 1 10.5838 6.7279 4.5538 17 1 8.7834 7.7531 3.2937 18 6 4.7979 2.8153 -1.3991 19 8 5.9774 2.9372 -1.6308 20 8 3.9013 2.9583 -2.3877 21 6 4.2732 0.0004 -0.0005 22 6 3.5842 -1.1973 -0.0005 23 6 2.1994 -1.1988 -0.0005 24 9 1.5247 -2.3693 -0.0061 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3633 0.8905 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 1.6585 2.1322 0.0004 29 1 6.2651 1.9336 0.4277 30 1 6.1630 4.3590 0.5453 31 1 5.0770 4.1659 1.9422 32 1 6.8516 2.9267 3.1515 33 1 7.9382 3.1195 1.7550 34 1 10.0265 4.0467 4.6434 35 1 4.2470 3.1588 -3.2683 36 1 5.3532 0.0018 -0.0014 37 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607613471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = -144.468212 kcal Electronic energy + Delta-G solvation = -21367.242264 eV Core-core repulsion = 17829.442954 eV Total energy + Delta-G solvation = -3537.799310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.89838 -41.76187 -40.06711 -37.80627 -36.85369 -35.24316 -33.81655 -32.88093 -30.68996 -28.03130 -27.69970 -25.73617 -23.81691 -23.15586 -22.48915 -21.27071 -19.18591 -18.54953 -18.52825 -18.22734 -17.54836 -17.25655 -16.66508 -16.51365 -16.12828 -15.48274 -15.37962 -15.09845 -14.54499 -14.39381 -14.26805 -14.15789 -14.05688 -13.72911 -13.20361 -13.09570 -12.88379 -12.78867 -12.71783 -12.59107 -12.36198 -12.16074 -11.92029 -11.79773 -11.44247 -11.30193 -10.56620 -9.88421 -9.68387 -9.50476 -8.19886 -6.31338 0.05571 0.27060 1.06345 1.41085 1.42834 1.53594 1.99416 2.40098 2.55811 3.12736 3.14058 3.27109 3.55523 3.71276 3.85221 4.03806 4.24716 4.31273 4.38301 4.49127 4.55010 4.66039 4.81612 4.84409 4.99600 5.03170 5.19041 5.23110 5.31182 5.37711 5.47045 5.50501 5.64495 5.72525 5.90090 5.97739 6.10610 6.28333 6.85253 6.88859 7.37863 8.92381 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.693426 B = 7818.635174 C = 8307.904438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.069 4.069 4 C -0.081 4.081 5 C 0.138 3.862 6 H 0.143 0.857 7 N -0.657 5.657 8 C 0.080 3.920 9 C 0.033 3.967 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.461 3.539 19 O -0.546 6.546 20 O -0.501 6.501 21 C -0.084 4.084 22 C -0.154 4.154 23 C 0.082 3.918 24 F -0.144 7.144 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.161 0.839 29 H 0.346 0.654 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.001 0.999 33 H -0.014 1.014 34 H 0.264 0.736 35 H 0.424 0.576 36 H 0.127 0.873 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.775 -6.865 -12.037 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.082 4.082 5 C 0.026 3.974 6 H 0.161 0.839 7 N -0.288 5.288 8 C -0.049 4.049 9 C -0.005 4.005 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.302 3.698 19 O -0.436 6.436 20 O -0.313 6.313 21 C -0.102 4.102 22 C -0.172 4.172 23 C 0.063 3.937 24 F -0.123 7.123 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.019 0.981 33 H 0.005 0.995 34 H 0.072 0.928 35 H 0.286 0.714 36 H 0.145 0.855 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.870 -7.165 -11.074 23.022 hybrid contribution 1.608 0.749 -0.892 1.985 sum -17.262 -6.416 -11.966 21.961 Atomic orbital electron populations 1.20788 0.88162 1.04255 1.03641 1.20151 0.98407 0.91154 1.02445 1.20983 0.92092 0.98525 0.97071 1.19345 0.93897 0.92497 1.02449 1.20368 0.94950 0.98226 0.83895 0.83929 1.60984 1.09507 1.21440 1.36916 1.21950 0.98406 0.87851 0.96644 1.18884 0.91939 0.95862 0.93783 1.21589 1.14241 0.94160 1.28254 0.91942 1.25974 0.96356 1.00913 0.96505 1.70112 1.20993 1.30678 1.35371 0.85417 0.77280 0.79226 0.78923 1.19490 1.20900 1.18775 1.24884 0.84087 0.71383 0.89424 1.90766 1.20428 1.48355 1.84098 1.84521 1.42232 1.82034 1.22473 1.20886 1.00528 0.91319 0.97472 1.21224 0.92418 1.00002 1.03583 1.17775 0.90224 0.81270 1.04446 1.91457 1.80428 1.46332 1.94040 0.89992 0.88922 0.91284 0.82129 0.83405 0.96362 0.90504 0.98078 0.99527 0.92761 0.71448 0.85516 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.84 71.23 0.70 -0.78 16 2 C -0.12 -2.29 5.89 -19.82 -0.12 -2.41 16 3 C -0.07 -1.29 9.32 22.26 0.21 -1.08 16 4 C -0.08 -1.89 4.88 -19.86 -0.10 -1.98 16 5 C 0.14 3.60 2.70 43.42 0.12 3.72 16 6 H 0.14 3.16 7.66 -2.39 -0.02 3.15 16 7 N -0.66 -22.65 5.55 -499.32 -2.77 -25.43 16 8 C 0.08 3.30 5.32 86.30 0.46 3.76 16 9 C 0.03 1.76 5.23 29.85 0.16 1.91 16 10 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 11 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.32 13.29 21.44 0.28 -57.03 16 14 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.46 12.26 7.44 71.24 0.53 12.79 16 19 O -0.55 -18.97 16.06 21.98 0.35 -18.62 16 20 O -0.50 -9.31 13.34 -51.35 -0.69 -9.99 16 21 C -0.08 -2.05 9.32 22.26 0.21 -1.84 16 22 C -0.15 -3.43 10.03 22.31 0.22 -3.21 16 23 C 0.08 1.80 7.24 22.38 0.16 1.97 16 24 F -0.14 -3.23 16.48 44.97 0.74 -2.49 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.87 8.09 -2.38 -0.02 0.85 16 27 H 0.07 0.92 7.64 -2.39 -0.02 0.90 16 28 H 0.16 2.13 8.04 -2.91 -0.02 2.10 16 29 H 0.35 12.65 7.09 -89.70 -0.64 12.01 16 30 H 0.02 0.77 7.62 -2.39 -0.02 0.76 16 31 H 0.08 2.95 8.06 -2.38 -0.02 2.93 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.42 4.52 9.10 -74.05 -0.67 3.84 16 36 H 0.13 3.23 7.24 -2.91 -0.02 3.21 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -71.25 326.42 2.99 -68.26 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.20 Total: 16.45 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.25 Total: -17.58 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.49 Total: -82.46 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.33 Total: -28.61 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.74 Total: -2.49 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.25 2.99 -68.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607613471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.204 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds