Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38218 * 120.01395 * 2 1 4 4 C 1.38225 * 120.02208 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.96961 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47586 * 339.99950 * 5 4 3 7 7 N 1.46903 * 109.47033 * 220.00027 * 5 4 3 8 8 C 1.46897 * 110.99886 * 155.00097 * 7 5 4 9 9 C 1.53006 * 109.46858 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46981 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47053 * 60.00355 * 14 12 10 16 16 H 1.48499 * 109.47180 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47328 * 300.00084 * 14 12 10 18 18 C 1.50700 * 109.47207 * 100.00208 * 5 4 3 19 19 O 1.20827 * 120.00329 * 119.99258 * 18 5 4 20 20 O 1.34232 * 119.99782 * 299.99951 * 18 5 4 21 21 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 22 22 C 1.38176 * 120.02823 * 359.97438 * 21 4 3 23 23 C 1.38445 * 120.00973 * 180.02562 * 2 1 3 24 24 F 1.35093 * 120.02545 * 359.70522 * 23 2 1 25 25 H 1.09003 * 109.47584 * 269.97527 * 1 2 3 26 26 H 1.09004 * 109.47177 * 29.97732 * 1 2 3 27 27 H 1.09004 * 109.47536 * 149.97191 * 1 2 3 28 28 H 1.07992 * 119.98884 * 0.02673 * 3 2 1 29 29 H 1.00904 * 110.99653 * 278.95673 * 7 5 4 30 30 H 1.08996 * 109.47421 * 299.99761 * 8 7 5 31 31 H 1.09001 * 109.47089 * 60.00339 * 8 7 5 32 32 H 1.09000 * 109.47220 * 299.99688 * 9 8 7 33 33 H 1.09001 * 109.46957 * 60.00303 * 9 8 7 34 34 H 0.97003 * 119.99714 * 179.97438 * 13 12 10 35 35 H 0.96701 * 116.99612 * 179.97438 * 20 18 5 36 36 H 1.08000 * 119.98569 * 179.97438 * 21 4 3 37 37 H 1.08000 * 120.01901 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3332 2.5026 -0.0011 6 1 3.6780 3.2996 -0.3525 7 7 5.4966 2.3968 -0.8918 8 6 5.9009 3.7186 -1.3890 9 6 7.1130 3.5680 -2.3105 10 6 7.5283 4.9241 -2.8201 11 1 6.9820 5.8052 -2.5173 12 6 8.6055 5.0399 -3.6728 13 7 9.2703 3.9669 -4.0419 14 14 9.1197 6.7208 -4.3050 15 1 9.4752 7.5937 -3.1574 16 1 10.2962 6.5747 -5.1993 17 1 7.9964 7.3302 -5.0612 18 6 4.7984 2.8149 1.3978 19 8 5.9781 2.9367 1.6292 20 8 3.9022 2.9577 2.3869 21 6 4.2732 0.0004 -0.0005 22 6 3.5842 -1.1973 0.0005 23 6 2.1994 -1.1989 -0.0005 24 9 1.5246 -2.3692 0.0050 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5143 28 1 1.6584 2.1321 0.0004 29 1 6.2648 1.9337 -0.4297 30 1 5.0761 4.1663 -1.9432 31 1 6.1628 4.3591 -0.5467 32 1 7.9378 3.1205 -1.7559 33 1 6.8516 2.9274 -3.1528 34 1 10.0279 4.0484 -4.6422 35 1 4.2484 3.1572 3.2675 36 1 5.3532 0.0018 -0.0014 37 1 4.1254 -2.1320 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607613479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -122.937802 kcal Electronic energy + Delta-G solvation = -21366.168686 eV Core-core repulsion = 17829.303005 eV Total energy + Delta-G solvation = -3536.865681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.99901 -40.67276 -39.14382 -36.62995 -35.59507 -33.46630 -32.72775 -31.53651 -29.14574 -27.10641 -26.46525 -23.93633 -22.83004 -22.20167 -20.69386 -20.26280 -18.12890 -17.65007 -17.09802 -16.68758 -16.26963 -16.17087 -15.77254 -15.06238 -14.51462 -14.35222 -14.08900 -13.83989 -13.55280 -13.42651 -13.31778 -12.94751 -12.84389 -12.26291 -12.12532 -11.98811 -11.68511 -11.48130 -11.18632 -11.07805 -10.94144 -10.75000 -10.58063 -10.12008 -9.48097 -9.20958 -9.01869 -8.59573 -8.39600 -8.22336 -6.00400 -4.03250 0.97371 1.12902 2.15187 2.97258 3.33534 3.37863 3.39872 3.48160 4.14319 4.28646 4.46774 4.56333 4.64452 4.66275 5.04271 5.07697 5.22073 5.27275 5.35796 5.38249 5.42866 5.62043 5.83432 5.90202 6.08034 6.13219 6.16789 6.29205 6.37426 6.43417 6.76635 6.87531 7.15674 7.54625 7.69366 7.83033 7.85371 8.02598 8.39703 9.02910 9.60400 11.11020 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.200622 B = 7819.541306 C = 8308.230462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.072 4.072 5 C 0.137 3.863 6 H 0.124 0.876 7 N -0.654 5.654 8 C 0.059 3.941 9 C 0.027 3.973 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.452 3.548 19 O -0.505 6.505 20 O -0.516 6.516 21 C -0.068 4.068 22 C -0.150 4.150 23 C 0.095 3.905 24 F -0.141 7.141 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.351 0.649 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.017 0.983 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.404 0.596 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -8.090 11.585 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.073 4.073 5 C 0.024 3.976 6 H 0.141 0.859 7 N -0.286 5.286 8 C -0.068 4.068 9 C -0.010 4.010 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.291 3.709 19 O -0.392 6.392 20 O -0.326 6.326 21 C -0.086 4.086 22 C -0.169 4.169 23 C 0.076 3.924 24 F -0.120 7.120 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.153 0.847 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.762 -8.389 10.579 21.523 hybrid contribution 1.045 1.222 0.985 1.886 sum -15.718 -7.167 11.564 20.788 Atomic orbital electron populations 1.20705 0.90143 1.03338 1.02674 1.19831 0.96938 0.91728 1.03813 1.20736 0.92874 0.97346 0.98103 1.19397 0.93159 0.93486 1.01294 1.20349 0.96375 0.96619 0.84283 0.85860 1.61118 1.08776 1.23568 1.35134 1.22364 1.00364 0.86194 0.97901 1.19045 0.90580 0.97350 0.94033 1.21093 1.13846 0.93028 1.28210 0.92779 1.24988 0.96363 0.96623 0.96287 1.69959 1.20328 1.28158 1.34689 0.86635 0.78048 0.84396 0.78774 1.20287 1.21249 1.20204 1.25048 0.84633 0.72422 0.88809 1.90769 1.18689 1.46269 1.83429 1.84596 1.43428 1.82903 1.21688 1.20861 1.00695 0.90672 0.96412 1.21099 0.92115 0.99767 1.03879 1.17565 0.90061 0.80840 1.03956 1.91463 1.80436 1.46107 1.93967 0.90931 0.90843 0.91299 0.84751 0.82772 0.91812 0.95606 0.96507 0.95473 0.92889 0.73804 0.84702 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.83 36.00 0.35 -0.55 16 2 C -0.12 -1.30 5.89 -104.56 -0.62 -1.92 16 3 C -0.07 -0.78 9.32 -39.59 -0.37 -1.14 16 4 C -0.07 -0.89 4.88 -104.62 -0.51 -1.40 16 5 C 0.14 1.87 2.70 -70.01 -0.19 1.68 16 6 H 0.12 1.53 7.66 -51.93 -0.40 1.13 16 7 N -0.65 -11.18 5.56 -109.19 -0.61 -11.79 16 8 C 0.06 1.22 5.32 -3.82 -0.02 1.20 16 9 C 0.03 0.71 5.23 -27.88 -0.15 0.56 16 10 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.45 6.27 7.44 36.01 0.27 6.54 16 19 O -0.50 -8.77 16.06 -18.75 -0.30 -9.07 16 20 O -0.52 -5.43 13.34 -39.26 -0.52 -5.96 16 21 C -0.07 -0.84 9.32 -39.60 -0.37 -1.21 16 22 C -0.15 -1.71 10.03 -39.51 -0.40 -2.11 16 23 C 0.09 1.11 7.24 -39.41 -0.29 0.82 16 24 F -0.14 -1.67 16.48 2.25 0.04 -1.63 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.07 0.56 7.64 -51.93 -0.40 0.16 16 28 H 0.13 1.16 8.03 -52.49 -0.42 0.74 16 29 H 0.35 6.18 7.09 -39.29 -0.28 5.91 16 30 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.03 0.55 7.62 -51.93 -0.40 0.15 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.40 2.66 9.10 45.56 0.41 3.08 16 36 H 0.14 1.65 7.24 -52.49 -0.38 1.27 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -32.71 326.42 -7.38 -40.08 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.93 Total: 4.00 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.69 Total: -11.06 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.13 Total: -37.95 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.83 Total: -15.03 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.71 -7.38 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607613479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.854 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds