Wall clock time and date at job start Tue Mar 31 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38218 * 120.01395 * 2 1 4 4 C 1.38225 * 120.02208 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.96961 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47586 * 339.99950 * 5 4 3 7 7 N 1.46903 * 109.47033 * 220.00027 * 5 4 3 8 8 C 1.46897 * 110.99886 * 155.00097 * 7 5 4 9 9 C 1.53006 * 109.46858 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46981 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00048 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99816 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47053 * 60.00355 * 14 12 10 16 16 H 1.48499 * 109.47180 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47328 * 300.00084 * 14 12 10 18 18 C 1.50700 * 109.47207 * 100.00208 * 5 4 3 19 19 O 1.20827 * 120.00329 * 119.99258 * 18 5 4 20 20 O 1.34232 * 119.99782 * 299.99951 * 18 5 4 21 21 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 22 22 C 1.38176 * 120.02823 * 359.97438 * 21 4 3 23 23 C 1.38445 * 120.00973 * 180.02562 * 2 1 3 24 24 F 1.35093 * 120.02545 * 359.70522 * 23 2 1 25 25 H 1.09003 * 109.47584 * 269.97527 * 1 2 3 26 26 H 1.09004 * 109.47177 * 29.97732 * 1 2 3 27 27 H 1.09004 * 109.47536 * 149.97191 * 1 2 3 28 28 H 1.07992 * 119.98884 * 0.02673 * 3 2 1 29 29 H 1.00904 * 110.99653 * 278.95673 * 7 5 4 30 30 H 1.08996 * 109.47421 * 299.99761 * 8 7 5 31 31 H 1.09001 * 109.47089 * 60.00339 * 8 7 5 32 32 H 1.09000 * 109.47220 * 299.99688 * 9 8 7 33 33 H 1.09001 * 109.46957 * 60.00303 * 9 8 7 34 34 H 0.97003 * 119.99714 * 179.97438 * 13 12 10 35 35 H 0.96701 * 116.99612 * 179.97438 * 20 18 5 36 36 H 1.08000 * 119.98569 * 179.97438 * 21 4 3 37 37 H 1.08000 * 120.01901 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3332 2.5026 -0.0011 6 1 3.6780 3.2996 -0.3525 7 7 5.4966 2.3968 -0.8918 8 6 5.9009 3.7186 -1.3890 9 6 7.1130 3.5680 -2.3105 10 6 7.5283 4.9241 -2.8201 11 1 6.9820 5.8052 -2.5173 12 6 8.6055 5.0399 -3.6728 13 7 9.2703 3.9669 -4.0419 14 14 9.1197 6.7208 -4.3050 15 1 9.4752 7.5937 -3.1574 16 1 10.2962 6.5747 -5.1993 17 1 7.9964 7.3302 -5.0612 18 6 4.7984 2.8149 1.3978 19 8 5.9781 2.9367 1.6292 20 8 3.9022 2.9577 2.3869 21 6 4.2732 0.0004 -0.0005 22 6 3.5842 -1.1973 0.0005 23 6 2.1994 -1.1989 -0.0005 24 9 1.5246 -2.3692 0.0050 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5143 28 1 1.6584 2.1321 0.0004 29 1 6.2648 1.9337 -0.4297 30 1 5.0761 4.1663 -1.9432 31 1 6.1628 4.3591 -0.5467 32 1 7.9378 3.1205 -1.7559 33 1 6.8516 2.9274 -3.1528 34 1 10.0279 4.0484 -4.6422 35 1 4.2484 3.1572 3.2675 36 1 5.3532 0.0018 -0.0014 37 1 4.1254 -2.1320 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607613479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:13 Heat of formation + Delta-G solvation = -144.404586 kcal Electronic energy + Delta-G solvation = -21367.099556 eV Core-core repulsion = 17829.303005 eV Total energy + Delta-G solvation = -3537.796551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90000 -41.76150 -40.06663 -37.80637 -36.85343 -35.24163 -33.81633 -32.88075 -30.68919 -28.03073 -27.69950 -25.73453 -23.81688 -23.15613 -22.48873 -21.27058 -19.18637 -18.54920 -18.52505 -18.22733 -17.54758 -17.25547 -16.66595 -16.51779 -16.12960 -15.48156 -15.37929 -15.09930 -14.53830 -14.38411 -14.23514 -14.15550 -14.10946 -13.72955 -13.20812 -13.06171 -12.87750 -12.82248 -12.70122 -12.59135 -12.37164 -12.15282 -11.91973 -11.79987 -11.44183 -11.31473 -10.56056 -9.88390 -9.68385 -9.50447 -8.19630 -6.31202 0.05574 0.27046 1.06245 1.41111 1.44484 1.52242 1.99400 2.40266 2.55793 3.12701 3.14214 3.27097 3.55506 3.71283 3.85238 4.03800 4.24640 4.31320 4.38276 4.49155 4.54994 4.65947 4.81634 4.84466 4.99661 5.03164 5.19043 5.23106 5.31175 5.37655 5.47007 5.50416 5.64525 5.72514 5.90094 5.97748 6.10594 6.28324 6.85171 6.88775 7.37920 8.92433 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.003580 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.200622 B = 7819.541306 C = 8308.230462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.069 4.069 4 C -0.081 4.081 5 C 0.138 3.862 6 H 0.143 0.857 7 N -0.657 5.657 8 C 0.080 3.920 9 C 0.033 3.967 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.263 1.263 18 C 0.461 3.539 19 O -0.546 6.546 20 O -0.501 6.501 21 C -0.084 4.084 22 C -0.154 4.154 23 C 0.082 3.918 24 F -0.144 7.144 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.346 0.654 30 H 0.077 0.923 31 H 0.018 0.982 32 H -0.014 1.014 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.424 0.576 36 H 0.127 0.873 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 -6.866 12.068 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.082 4.082 5 C 0.026 3.974 6 H 0.161 0.839 7 N -0.288 5.288 8 C -0.048 4.048 9 C -0.004 4.004 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.302 3.698 19 O -0.436 6.436 20 O -0.313 6.313 21 C -0.102 4.102 22 C -0.172 4.172 23 C 0.063 3.937 24 F -0.123 7.123 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.005 0.995 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.285 0.715 36 H 0.145 0.855 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.867 -7.168 11.095 23.032 hybrid contribution 1.609 0.756 0.914 1.999 sum -17.258 -6.412 12.009 21.982 Atomic orbital electron populations 1.20788 0.88161 1.04154 1.03734 1.20151 0.98407 0.91153 1.02446 1.20981 0.92090 0.98524 0.97073 1.19346 0.93895 0.92495 1.02448 1.20366 0.94954 0.98232 0.83888 0.83928 1.60984 1.09525 1.21430 1.36908 1.21948 0.98400 0.87851 0.96649 1.18882 0.91929 0.95852 0.93778 1.21568 1.14248 0.94164 1.28397 0.91926 1.25974 0.96351 1.00920 0.96474 1.70104 1.20894 1.30726 1.35413 0.85474 0.77908 0.79154 0.78340 1.19369 1.20896 1.18815 1.24887 0.84091 0.71376 0.89422 1.90768 1.20415 1.48351 1.84114 1.84523 1.42236 1.82060 1.22445 1.20887 1.00529 0.91319 0.97475 1.21225 0.92418 1.00000 1.03583 1.17774 0.90221 0.81270 1.04445 1.91454 1.80423 1.46338 1.94037 0.89640 0.89112 0.91452 0.82133 0.83406 0.90498 0.96362 0.99543 0.98086 0.92753 0.71451 0.85516 0.83487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.83 71.23 0.70 -0.78 16 2 C -0.12 -2.29 5.89 -19.82 -0.12 -2.41 16 3 C -0.07 -1.29 9.32 22.26 0.21 -1.08 16 4 C -0.08 -1.89 4.88 -19.86 -0.10 -1.98 16 5 C 0.14 3.60 2.70 43.42 0.12 3.72 16 6 H 0.14 3.16 7.66 -2.39 -0.02 3.15 16 7 N -0.66 -22.66 5.56 -499.36 -2.77 -25.43 16 8 C 0.08 3.30 5.32 86.31 0.46 3.76 16 9 C 0.03 1.77 5.23 29.85 0.16 1.93 16 10 C -0.55 -31.23 9.11 25.60 0.23 -30.99 16 11 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 14 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 18 C 0.46 12.27 7.44 71.24 0.53 12.79 16 19 O -0.55 -18.98 16.06 21.96 0.35 -18.62 16 20 O -0.50 -9.31 13.34 -51.44 -0.69 -10.00 16 21 C -0.08 -2.05 9.32 22.26 0.21 -1.84 16 22 C -0.15 -3.43 10.03 22.31 0.22 -3.21 16 23 C 0.08 1.81 7.24 22.38 0.16 1.97 16 24 F -0.14 -3.23 16.48 44.97 0.74 -2.49 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.90 8.09 -2.38 -0.02 0.88 16 27 H 0.07 0.93 7.64 -2.38 -0.02 0.91 16 28 H 0.16 2.13 8.03 -2.91 -0.02 2.11 16 29 H 0.35 12.65 7.09 -89.69 -0.64 12.02 16 30 H 0.08 2.96 8.05 -2.39 -0.02 2.94 16 31 H 0.02 0.77 7.62 -2.39 -0.02 0.75 16 32 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.42 4.52 9.10 -74.06 -0.67 3.85 16 36 H 0.13 3.23 7.24 -2.91 -0.02 3.21 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -71.24 326.42 2.99 -68.25 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.20 Total: 16.57 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.25 Total: -17.62 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.49 Total: -82.49 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.33 Total: -28.62 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.74 Total: -2.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -71.24 2.99 -68.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607613479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.150 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds