Wall clock time and date at job start Tue Mar 31 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38215 * 120.01169 * 2 1 4 4 C 1.38221 * 120.02586 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.97703 * 180.02562 * 4 3 2 6 6 N 1.46492 * 109.46970 * 95.46519 * 5 4 3 7 7 C 1.36930 * 120.00371 * 89.83200 * 6 5 4 8 8 H 1.08002 * 120.00141 * 320.35472 * 7 6 5 9 9 C 1.38819 * 120.00384 * 140.35526 * 7 6 5 10 10 N 1.31616 * 119.99912 * 162.92067 * 9 7 6 11 11 Si 1.86796 * 119.99740 * 342.92047 * 9 7 6 12 12 H 1.48505 * 109.47057 * 95.53719 * 11 9 7 13 13 H 1.48501 * 109.47216 * 215.53371 * 11 9 7 14 14 H 1.48498 * 109.47180 * 335.53898 * 11 9 7 15 15 C 1.46502 * 119.99928 * 269.82633 * 6 5 4 16 16 C 1.52999 * 109.46907 * 90.00195 * 15 6 5 17 17 C 1.50703 * 109.47280 * 179.97438 * 16 15 6 18 18 O 1.20825 * 119.99850 * 0.02562 * 17 16 15 19 19 O 1.34227 * 120.00312 * 179.97438 * 17 16 15 20 20 C 1.38267 * 120.05088 * 359.97438 * 4 3 2 21 21 C 1.38179 * 120.02472 * 359.97438 * 20 4 3 22 22 C 1.38432 * 120.01020 * 179.97438 * 2 1 3 23 23 F 1.35100 * 120.02716 * 359.74240 * 22 2 1 24 24 H 1.09006 * 109.46696 * 270.02219 * 1 2 3 25 25 H 1.08995 * 109.47264 * 30.01465 * 1 2 3 26 26 H 1.08995 * 109.47551 * 150.02226 * 1 2 3 27 27 H 1.08001 * 119.98832 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.47210 * 215.46524 * 5 4 3 29 29 H 1.09000 * 109.47069 * 335.46534 * 5 4 3 30 30 H 0.97005 * 120.00029 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.47492 * 210.00268 * 15 6 5 32 32 H 1.08998 * 109.47208 * 330.00516 * 15 6 5 33 33 H 1.09005 * 109.47372 * 300.00135 * 16 15 6 34 34 H 1.09001 * 109.47628 * 60.00292 * 16 15 6 35 35 H 0.96695 * 117.00312 * 180.02562 * 19 17 16 36 36 H 1.07998 * 119.99378 * 180.02562 * 20 4 3 37 37 H 1.08002 * 120.01179 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3332 2.5028 0.0000 6 7 4.6916 2.8592 1.3750 7 6 5.8802 2.4334 1.9051 8 1 6.2404 1.4377 1.6926 9 6 6.6221 3.2815 2.7158 10 7 7.5681 2.7920 3.4890 11 14 6.2780 5.1175 2.7092 12 1 5.3574 5.4526 3.8254 13 1 7.5524 5.8607 2.8788 14 1 5.6504 5.4989 1.4186 15 6 3.7784 3.6713 2.1830 16 6 2.8173 2.7547 2.9427 17 6 1.8783 3.5900 3.7743 18 8 1.9681 4.7948 3.7603 19 8 0.9414 2.9956 4.5297 20 6 4.2733 0.0005 -0.0005 21 6 3.5842 -1.1972 0.0005 22 6 2.1994 -1.1987 0.0005 23 9 1.5247 -2.3692 0.0063 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6584 2.1322 -0.0004 28 1 5.2397 2.4000 -0.5967 29 1 3.7046 3.2848 -0.4259 30 1 8.0868 3.3847 4.0553 31 1 4.3526 4.2651 2.8941 32 1 3.2092 4.3346 1.5317 33 1 2.2430 2.1608 2.2316 34 1 3.3864 2.0913 3.5940 35 1 0.3620 3.5729 5.0455 36 1 5.3532 0.0019 -0.0005 37 1 4.1255 -2.1318 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607635842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:22 Heat of formation + Delta-G solvation = -116.602302 kcal Electronic energy + Delta-G solvation = -22348.278868 eV Core-core repulsion = 18811.687914 eV Total energy + Delta-G solvation = -3536.590954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81574 -41.26897 -40.24359 -37.91493 -37.03312 -34.12960 -33.81642 -32.69762 -31.33060 -27.92138 -27.34350 -26.36109 -23.71804 -23.20018 -22.03231 -21.33506 -19.22542 -18.60046 -18.37962 -17.73353 -17.40629 -17.32736 -16.73381 -16.59805 -16.10461 -15.72961 -14.98277 -14.90015 -14.54829 -14.39622 -14.24142 -14.11171 -14.09078 -13.70838 -13.61614 -13.24296 -12.94193 -12.63070 -12.54448 -12.46825 -12.32030 -12.14694 -11.85150 -11.72578 -11.63397 -11.42346 -10.70205 -9.73946 -9.37362 -8.79444 -8.18282 -5.64493 0.28280 0.37899 1.20187 1.34928 1.42664 1.51068 2.13452 2.41371 2.66752 3.12677 3.38580 3.52541 3.82648 3.91479 4.00401 4.07573 4.11941 4.36256 4.42600 4.50584 4.65560 4.70500 4.73749 4.80441 4.88465 4.97830 5.02918 5.11678 5.19086 5.26953 5.35167 5.45563 5.59997 5.76236 5.97062 6.07695 6.23389 6.93538 7.02769 7.59442 8.01188 8.99547 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.006752 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.731715 B = 4146.127878 C = 5331.081253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.095 4.095 5 C 0.177 3.823 6 N -0.602 5.602 7 C -0.248 4.248 8 H 0.057 0.943 9 C -0.011 4.011 10 N -0.946 5.946 11 Si 0.935 3.065 12 H -0.292 1.292 13 H -0.312 1.312 14 H -0.252 1.252 15 C 0.146 3.854 16 C -0.128 4.128 17 C 0.489 3.511 18 O -0.553 6.553 19 O -0.510 6.510 20 C -0.089 4.089 21 C -0.154 4.154 22 C 0.067 3.933 23 F -0.148 7.148 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.262 0.738 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.425 0.575 36 H 0.122 0.878 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.606 -3.548 -6.644 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.097 4.097 5 C 0.052 3.948 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.075 0.925 9 C -0.208 4.208 10 N -0.590 5.590 11 Si 0.766 3.234 12 H -0.221 1.221 13 H -0.241 1.241 14 H -0.175 1.175 15 C 0.020 3.980 16 C -0.168 4.168 17 C 0.333 3.667 18 O -0.444 6.444 19 O -0.324 6.324 20 C -0.108 4.108 21 C -0.173 4.173 22 C 0.048 3.952 23 F -0.127 7.127 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.140 0.860 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.212 -3.471 -6.798 17.020 hybrid contribution 0.134 0.785 0.997 1.276 sum -15.078 -2.686 -5.801 16.377 Atomic orbital electron populations 1.20758 0.88584 1.03982 1.03338 1.20143 0.98093 0.91422 1.02576 1.20969 0.93007 0.97581 0.99416 1.20907 0.94407 0.96896 0.97530 1.20102 0.98033 0.91757 0.84891 1.44150 1.16776 1.61571 1.09800 1.18659 0.96048 0.96611 1.26479 0.92513 1.25989 0.95906 1.00807 0.98073 1.69921 1.25973 1.36074 1.27035 0.85992 0.75019 0.83392 0.79027 1.22051 1.24099 1.17527 1.21047 0.90791 0.92137 0.94034 1.22102 0.95858 0.99797 0.99015 1.23763 0.78929 0.87029 0.76959 1.90684 1.71125 1.17773 1.64819 1.84542 1.44937 1.45949 1.56937 1.20972 1.00247 0.91478 0.98062 1.21237 0.92454 0.99975 1.03643 1.17670 0.90158 0.81123 1.06231 1.91426 1.80483 1.46477 1.94319 0.90358 0.89256 0.91304 0.83513 0.91463 0.90286 0.92932 0.95022 0.91012 0.86081 0.89051 0.71387 0.86039 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.83 71.24 0.70 -1.32 16 2 C -0.12 -2.99 5.89 -19.82 -0.12 -3.11 16 3 C -0.09 -2.29 7.42 22.26 0.17 -2.13 16 4 C -0.09 -2.84 5.30 -19.86 -0.11 -2.94 16 5 C 0.18 5.84 5.84 85.64 0.50 6.34 16 6 N -0.60 -25.07 2.05 -706.35 -1.45 -26.52 16 7 C -0.25 -12.80 9.95 84.04 0.84 -11.97 16 8 H 0.06 3.20 8.02 -2.91 -0.02 3.17 16 9 C -0.01 -0.60 5.38 84.86 0.46 -0.15 16 10 N -0.95 -57.13 13.97 21.65 0.30 -56.83 16 11 Si 0.93 46.08 24.78 68.60 1.70 47.78 16 12 H -0.29 -14.73 6.76 99.48 0.67 -14.06 16 13 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 14 H -0.25 -11.55 7.07 99.48 0.70 -10.85 16 15 C 0.15 5.77 3.76 86.38 0.32 6.10 16 16 C -0.13 -4.36 6.13 29.85 0.18 -4.18 16 17 C 0.49 15.59 8.33 71.24 0.59 16.18 16 18 O -0.55 -20.86 16.74 21.97 0.37 -20.50 16 19 O -0.51 -12.21 13.42 -51.39 -0.69 -12.90 16 20 C -0.09 -2.77 9.72 22.26 0.22 -2.55 16 21 C -0.15 -4.41 10.03 22.31 0.22 -4.19 16 22 C 0.07 1.87 7.24 22.37 0.16 2.03 16 23 F -0.15 -4.09 16.48 44.97 0.74 -3.35 16 24 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.07 1.23 7.64 -2.39 -0.02 1.21 16 27 H 0.15 3.01 8.04 -2.91 -0.02 2.99 16 28 H 0.07 2.28 8.02 -2.38 -0.02 2.26 16 29 H 0.08 2.19 7.80 -2.39 -0.02 2.17 16 30 H 0.26 15.21 8.31 -92.70 -0.77 14.43 16 31 H 0.03 1.48 3.10 -2.39 -0.01 1.47 16 32 H 0.07 2.54 7.85 -2.39 -0.02 2.53 16 33 H 0.12 3.57 5.87 -2.38 -0.01 3.55 16 34 H 0.09 3.50 8.14 -2.39 -0.02 3.49 16 35 H 0.42 5.96 9.10 -74.06 -0.67 5.28 16 36 H 0.12 4.00 8.02 -2.91 -0.02 3.98 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -66.96 317.40 5.50 -61.46 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.39 Total: 12.75 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 4.14 Total: -1.89 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.15 Total: -83.35 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.32 Total: -33.40 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.74 Total: -3.35 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.70 Total: 47.78 kcal Total: -66.96 5.50 -61.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607635842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.142 kcal (2) G-P(sol) polarization free energy of solvation -66.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds