Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38269 * 119.96977 * 2 1 4 4 C 1.38180 * 120.02279 * 180.32200 * 3 2 1 5 5 C 1.38476 * 119.97394 * 359.42499 * 4 3 2 6 6 F 1.35094 * 120.02699 * 180.25695 * 5 4 3 7 7 C 1.38437 * 119.94695 * 0.27506 * 5 4 3 8 8 C 1.50710 * 120.01194 * 180.02562 * 7 5 4 9 9 N 1.46502 * 109.46886 * 284.99922 * 8 7 5 10 10 C 1.36939 * 119.99914 * 89.99562 * 9 8 7 11 11 H 1.08001 * 120.00020 * 8.03417 * 10 9 8 12 12 C 1.38809 * 119.99832 * 188.02670 * 10 9 8 13 13 N 1.31618 * 120.00191 * 25.46497 * 12 10 9 14 14 Si 1.86796 * 120.00252 * 205.46495 * 12 10 9 15 15 H 1.48496 * 109.47510 * 84.98845 * 14 12 10 16 16 H 1.48503 * 109.47448 * 204.99276 * 14 12 10 17 17 H 1.48504 * 109.46951 * 324.99250 * 14 12 10 18 18 C 1.46501 * 119.99908 * 270.00117 * 9 8 7 19 19 C 1.52996 * 109.47181 * 84.18378 * 18 9 8 20 20 C 1.50700 * 109.47275 * 180.02562 * 19 18 9 21 21 O 1.20829 * 119.99787 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00476 * 179.97438 * 20 19 18 23 23 C 1.38213 * 119.97895 * 0.02562 * 7 5 4 24 24 H 1.09006 * 109.46955 * 270.27175 * 1 2 3 25 25 H 1.09000 * 109.47523 * 30.27765 * 1 2 3 26 26 H 1.09000 * 109.46610 * 150.28288 * 1 2 3 27 27 H 1.08001 * 119.98848 * 0.04752 * 3 2 1 28 28 H 1.07997 * 120.01233 * 179.69974 * 4 3 2 29 29 H 1.08996 * 109.46811 * 44.99659 * 8 7 5 30 30 H 1.08996 * 109.47134 * 165.00202 * 8 7 5 31 31 H 0.97004 * 120.00449 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47131 * 204.18086 * 18 9 8 33 33 H 1.08998 * 109.47056 * 324.18651 * 18 9 8 34 34 H 1.09005 * 109.47490 * 299.99597 * 19 18 9 35 35 H 1.09006 * 109.47685 * 59.99954 * 19 18 9 36 36 H 0.96699 * 117.00643 * 179.97438 * 22 20 19 37 37 H 1.07996 * 119.99320 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1991 -0.0067 5 6 4.2725 0.0002 -0.0014 6 9 5.6235 0.0003 -0.0027 7 6 3.5798 -1.1984 0.0048 8 6 4.3326 -2.5040 0.0112 9 7 4.8857 -2.7552 -1.3219 10 6 6.1367 -2.2989 -1.6413 11 1 6.7665 -1.8695 -0.8761 12 6 6.5954 -2.3882 -2.9483 13 7 5.7375 -2.4217 -3.9460 14 14 8.4301 -2.4611 -3.2915 15 1 8.8990 -3.8657 -3.1814 16 1 8.6978 -1.9559 -4.6621 17 1 9.1522 -1.6194 -2.3039 18 6 4.1005 -3.4946 -2.3134 19 6 3.1495 -2.5339 -3.0301 20 6 2.3413 -3.2945 -4.0495 21 8 2.5091 -4.4830 -4.1889 22 8 1.4350 -2.6519 -4.8028 23 6 2.1977 -1.1973 0.0053 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3632 -0.8925 -0.5094 27 1 1.6571 2.1327 0.0008 28 1 4.1188 2.1348 -0.0116 29 1 5.1438 -2.4521 0.7373 30 1 3.6542 -3.3132 0.2814 31 1 6.0580 -2.4838 -4.8594 32 1 4.7713 -3.9517 -3.0407 33 1 3.5228 -4.2718 -1.8131 34 1 2.4785 -2.0768 -2.3028 35 1 3.7271 -1.7566 -3.5304 36 1 0.9411 -3.1819 -5.4433 37 1 1.6571 -2.1322 0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607791743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -93.082488 kcal Electronic energy + Delta-G solvation = -22835.141021 eV Core-core repulsion = 19299.569963 eV Total energy + Delta-G solvation = -3535.571058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.04122 -39.43328 -38.81390 -36.18207 -35.30542 -32.57356 -31.66142 -30.77703 -29.73267 -26.31815 -25.63275 -24.56288 -22.22273 -21.66332 -20.11021 -19.68191 -17.45834 -16.92678 -16.75971 -15.89160 -15.57400 -15.28672 -14.91680 -14.80478 -14.46303 -13.64912 -13.56737 -13.39362 -13.16266 -13.10922 -12.84540 -12.44915 -12.09096 -11.85752 -11.53229 -11.40019 -11.30191 -11.03306 -10.85372 -10.79752 -10.57692 -10.41789 -10.12583 -9.84843 -9.75175 -9.60609 -8.53505 -8.36353 -7.90033 -7.06820 -5.87609 -3.14426 1.66372 1.69450 3.08073 3.40664 3.48169 3.48500 3.89879 4.01587 4.51002 4.93124 5.07999 5.10380 5.24797 5.41124 5.50686 5.54024 5.64374 5.71292 5.95718 5.96678 6.09140 6.11672 6.30850 6.35907 6.50951 6.54485 6.66783 6.68082 6.74343 6.85273 6.94630 7.13056 7.44506 7.47991 7.64495 7.86084 8.25160 8.68463 9.13925 9.75057 10.17974 11.18994 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.008538 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.673640 B = 3278.673514 C = 4820.016309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.159 4.159 5 C 0.118 3.882 6 F -0.128 7.128 7 C -0.118 4.118 8 C 0.178 3.822 9 N -0.581 5.581 10 C -0.245 4.245 11 H 0.084 0.916 12 C -0.001 4.001 13 N -0.902 5.902 14 Si 0.902 3.098 15 H -0.288 1.288 16 H -0.293 1.293 17 H -0.280 1.280 18 C 0.184 3.816 19 C -0.120 4.120 20 C 0.486 3.514 21 O -0.533 6.533 22 O -0.529 6.529 23 C -0.095 4.095 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.255 0.745 32 H 0.102 0.898 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.392 0.608 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 4.388 6.057 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.128 4.128 4 C -0.178 4.178 5 C 0.098 3.902 6 F -0.107 7.107 7 C -0.123 4.123 8 C 0.051 3.949 9 N -0.299 5.299 10 C -0.374 4.374 11 H 0.102 0.898 12 C -0.198 4.198 13 N -0.547 5.547 14 Si 0.732 3.268 15 H -0.215 1.215 16 H -0.220 1.220 17 H -0.206 1.206 18 C 0.058 3.942 19 C -0.160 4.160 20 C 0.330 3.670 21 O -0.422 6.422 22 O -0.340 6.340 23 C -0.114 4.114 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.248 0.752 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.390 4.246 6.139 11.995 hybrid contribution 0.713 -0.030 -1.003 1.231 sum -8.677 4.215 5.136 10.928 Atomic orbital electron populations 1.20709 0.91528 1.02500 1.01707 1.19812 0.95801 0.93194 1.01940 1.20635 0.93005 0.97398 1.01772 1.21047 0.94943 0.96931 1.04868 1.17486 0.77385 0.93727 1.01644 1.91515 1.28498 1.97262 1.93398 1.21272 0.94403 0.97345 0.99281 1.19953 0.95467 0.90068 0.89445 1.44544 1.15005 1.61668 1.08668 1.19468 0.88704 1.35500 0.93704 0.89797 1.24725 0.97981 1.01774 0.95304 1.69992 1.32364 1.53859 0.98499 0.86279 0.85549 0.77918 0.77014 1.21470 1.21992 1.20592 1.20753 0.92338 0.90009 0.91129 1.22492 0.96492 1.02594 0.94380 1.24427 0.76043 0.86604 0.79958 1.90607 1.65853 1.17601 1.68146 1.84665 1.51487 1.47190 1.50678 1.20724 0.92801 0.97366 1.00524 0.91703 0.91912 0.91758 0.86196 0.85746 0.91970 0.92597 0.93486 0.88011 0.96390 0.91275 0.84526 0.75176 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.11 -1.52 5.88 -104.61 -0.62 -2.14 16 3 C -0.11 -1.56 9.70 -39.59 -0.38 -1.94 16 4 C -0.16 -2.58 10.03 -39.51 -0.40 -2.98 16 5 C 0.12 2.25 7.21 -39.42 -0.28 1.97 16 6 F -0.13 -2.74 14.75 2.25 0.03 -2.70 16 7 C -0.12 -2.18 4.90 -104.55 -0.51 -2.69 16 8 C 0.18 3.49 5.56 -5.19 -0.03 3.46 16 9 N -0.58 -13.64 2.52 -174.61 -0.44 -14.08 16 10 C -0.25 -6.37 8.64 -15.06 -0.13 -6.50 16 11 H 0.08 2.20 7.01 -52.49 -0.37 1.83 16 12 C 0.00 -0.02 4.89 -17.43 -0.09 -0.11 16 13 N -0.90 -24.54 8.60 55.49 0.48 -24.07 16 14 Si 0.90 21.60 29.62 -169.99 -5.04 16.57 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 C 0.18 4.31 4.21 -4.04 -0.02 4.30 16 19 C -0.12 -2.63 5.48 -27.89 -0.15 -2.78 16 20 C 0.49 10.06 8.33 36.01 0.30 10.36 16 21 O -0.53 -12.20 16.74 -18.75 -0.31 -12.51 16 22 O -0.53 -9.02 13.42 -39.25 -0.53 -9.55 16 23 C -0.10 -1.51 7.72 -39.60 -0.31 -1.81 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.06 1.21 7.97 -51.93 -0.41 0.80 16 30 H 0.06 0.98 7.76 -51.93 -0.40 0.57 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 2.75 5.81 -51.93 -0.30 2.45 16 33 H 0.02 0.40 7.93 -51.93 -0.41 -0.01 16 34 H 0.07 1.41 5.96 -51.93 -0.31 1.10 16 35 H 0.14 3.46 6.33 -51.93 -0.33 3.13 16 36 H 0.39 4.70 9.10 45.56 0.41 5.11 16 37 H 0.12 1.74 8.00 -52.49 -0.42 1.32 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -29.91 314.15 -7.11 -37.02 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.78 Total: 6.27 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.25 Total: -1.68 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.04 Total: -38.15 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.84 Total: -22.06 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.03 Total: -2.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.04 Total: 16.57 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.91 -7.11 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607791743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.067 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds