Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38269 * 119.96977 * 2 1 4 4 C 1.38180 * 120.02279 * 180.32200 * 3 2 1 5 5 C 1.38476 * 119.97394 * 359.42499 * 4 3 2 6 6 F 1.35094 * 120.02699 * 180.25695 * 5 4 3 7 7 C 1.38437 * 119.94695 * 0.27506 * 5 4 3 8 8 C 1.50710 * 120.01194 * 180.02562 * 7 5 4 9 9 N 1.46502 * 109.46886 * 284.99922 * 8 7 5 10 10 C 1.36939 * 119.99914 * 89.99562 * 9 8 7 11 11 H 1.08001 * 120.00020 * 8.03417 * 10 9 8 12 12 C 1.38809 * 119.99832 * 188.02670 * 10 9 8 13 13 N 1.31618 * 120.00191 * 25.46497 * 12 10 9 14 14 Si 1.86796 * 120.00252 * 205.46495 * 12 10 9 15 15 H 1.48496 * 109.47510 * 84.98845 * 14 12 10 16 16 H 1.48503 * 109.47448 * 204.99276 * 14 12 10 17 17 H 1.48504 * 109.46951 * 324.99250 * 14 12 10 18 18 C 1.46501 * 119.99908 * 270.00117 * 9 8 7 19 19 C 1.52996 * 109.47181 * 84.18378 * 18 9 8 20 20 C 1.50700 * 109.47275 * 180.02562 * 19 18 9 21 21 O 1.20829 * 119.99787 * 359.97438 * 20 19 18 22 22 O 1.34228 * 120.00476 * 179.97438 * 20 19 18 23 23 C 1.38213 * 119.97895 * 0.02562 * 7 5 4 24 24 H 1.09006 * 109.46955 * 270.27175 * 1 2 3 25 25 H 1.09000 * 109.47523 * 30.27765 * 1 2 3 26 26 H 1.09000 * 109.46610 * 150.28288 * 1 2 3 27 27 H 1.08001 * 119.98848 * 0.04752 * 3 2 1 28 28 H 1.07997 * 120.01233 * 179.69974 * 4 3 2 29 29 H 1.08996 * 109.46811 * 44.99659 * 8 7 5 30 30 H 1.08996 * 109.47134 * 165.00202 * 8 7 5 31 31 H 0.97004 * 120.00449 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47131 * 204.18086 * 18 9 8 33 33 H 1.08998 * 109.47056 * 324.18651 * 18 9 8 34 34 H 1.09005 * 109.47490 * 299.99597 * 19 18 9 35 35 H 1.09006 * 109.47685 * 59.99954 * 19 18 9 36 36 H 0.96699 * 117.00643 * 179.97438 * 22 20 19 37 37 H 1.07996 * 119.99320 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1991 -0.0067 5 6 4.2725 0.0002 -0.0014 6 9 5.6235 0.0003 -0.0027 7 6 3.5798 -1.1984 0.0048 8 6 4.3326 -2.5040 0.0112 9 7 4.8857 -2.7552 -1.3219 10 6 6.1367 -2.2989 -1.6413 11 1 6.7665 -1.8695 -0.8761 12 6 6.5954 -2.3882 -2.9483 13 7 5.7375 -2.4217 -3.9460 14 14 8.4301 -2.4611 -3.2915 15 1 8.8990 -3.8657 -3.1814 16 1 8.6978 -1.9559 -4.6621 17 1 9.1522 -1.6194 -2.3039 18 6 4.1005 -3.4946 -2.3134 19 6 3.1495 -2.5339 -3.0301 20 6 2.3413 -3.2945 -4.0495 21 8 2.5091 -4.4830 -4.1889 22 8 1.4350 -2.6519 -4.8028 23 6 2.1977 -1.1973 0.0053 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8875 -0.5181 26 1 -0.3632 -0.8925 -0.5094 27 1 1.6571 2.1327 0.0008 28 1 4.1188 2.1348 -0.0116 29 1 5.1438 -2.4521 0.7373 30 1 3.6542 -3.3132 0.2814 31 1 6.0580 -2.4838 -4.8594 32 1 4.7713 -3.9517 -3.0407 33 1 3.5228 -4.2718 -1.8131 34 1 2.4785 -2.0768 -2.3028 35 1 3.7271 -1.7566 -3.5304 36 1 0.9411 -3.1819 -5.4433 37 1 1.6571 -2.1322 0.0106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607791743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -110.153047 kcal Electronic energy + Delta-G solvation = -22835.881256 eV Core-core repulsion = 19299.569963 eV Total energy + Delta-G solvation = -3536.311293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.54768 -41.04446 -40.08959 -37.87710 -36.87557 -34.09442 -33.01820 -32.44139 -31.36631 -27.54768 -27.13696 -26.32607 -23.70099 -23.12670 -21.64942 -21.20970 -19.12743 -18.53163 -18.29004 -17.36647 -17.14433 -17.00729 -16.54596 -16.28412 -15.92223 -15.44683 -14.92988 -14.80428 -14.54340 -14.31319 -14.16047 -13.93932 -13.79968 -13.36860 -13.02921 -12.83110 -12.71664 -12.57144 -12.44102 -12.38867 -12.24868 -11.91993 -11.78037 -11.72754 -11.52821 -11.37092 -10.41697 -9.71025 -9.19821 -8.93458 -7.86896 -5.13793 0.40044 0.44382 1.43475 1.46928 1.50745 1.56011 2.38383 2.55508 2.78539 3.27106 3.64425 3.76857 3.93538 4.04058 4.10565 4.40137 4.42099 4.48408 4.63770 4.67198 4.82417 4.85657 4.91154 4.96266 5.03009 5.12736 5.18003 5.38481 5.46897 5.55046 5.59995 5.65955 5.71969 5.77494 5.88166 6.18256 6.31327 7.15805 7.20645 7.85652 8.24756 9.17129 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.008538 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.673640 B = 3278.673514 C = 4820.016309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.164 4.164 5 C 0.078 3.922 6 F -0.152 7.152 7 C -0.133 4.133 8 C 0.177 3.823 9 N -0.595 5.595 10 C -0.242 4.242 11 H 0.075 0.925 12 C -0.047 4.047 13 N -0.917 5.917 14 Si 0.950 3.050 15 H -0.291 1.291 16 H -0.299 1.299 17 H -0.278 1.278 18 C 0.192 3.808 19 C -0.106 4.106 20 C 0.494 3.506 21 O -0.558 6.558 22 O -0.517 6.517 23 C -0.099 4.099 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.245 0.755 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.418 0.582 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 5.416 6.677 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.182 4.182 5 C 0.058 3.942 6 F -0.131 7.131 7 C -0.137 4.137 8 C 0.052 3.948 9 N -0.314 5.314 10 C -0.371 4.371 11 H 0.092 0.908 12 C -0.242 4.242 13 N -0.565 5.565 14 Si 0.780 3.220 15 H -0.218 1.218 16 H -0.226 1.226 17 H -0.204 1.204 18 C 0.066 3.934 19 C -0.146 4.146 20 C 0.339 3.661 21 O -0.450 6.450 22 O -0.330 6.330 23 C -0.118 4.118 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.278 0.722 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.123 5.294 6.779 14.864 hybrid contribution 1.387 -0.281 -1.095 1.789 sum -10.737 5.013 5.683 13.142 Atomic orbital electron populations 1.20794 0.88536 1.03627 1.03333 1.20278 0.97911 0.92390 0.99501 1.21102 0.92173 0.99112 0.99601 1.21323 0.96101 0.96471 1.04347 1.17966 0.76715 0.95356 1.04180 1.91444 1.30303 1.97438 1.93933 1.21098 0.95491 0.96127 1.00973 1.19992 0.95810 0.91823 0.87218 1.44513 1.14995 1.62108 1.09771 1.19501 0.90067 1.34292 0.93244 0.90767 1.25240 1.00458 1.02954 0.95513 1.70143 1.32870 1.55482 0.97981 0.85526 0.82720 0.77422 0.76331 1.21812 1.22593 1.20355 1.20466 0.91830 0.90474 0.90603 1.22115 0.96366 1.01318 0.94825 1.24016 0.76255 0.85924 0.79923 1.90605 1.66826 1.18597 1.68926 1.84567 1.50679 1.47041 1.50757 1.20966 0.91726 0.99055 1.00052 0.89698 0.90257 0.91244 0.82584 0.84379 0.92839 0.90436 0.94507 0.91831 0.95354 0.89582 0.87643 0.72158 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.06 16 2 C -0.10 -2.48 5.88 -19.86 -0.12 -2.60 16 3 C -0.10 -2.53 9.70 22.26 0.22 -2.32 16 4 C -0.16 -5.05 10.03 22.31 0.22 -4.83 16 5 C 0.08 2.96 7.21 22.37 0.16 3.13 16 6 F -0.15 -6.73 14.75 44.97 0.66 -6.06 16 7 C -0.13 -4.81 4.90 -19.82 -0.10 -4.91 16 8 C 0.18 6.97 5.56 85.64 0.48 7.45 16 9 N -0.59 -28.39 2.52 -706.34 -1.78 -30.17 16 10 C -0.24 -12.90 8.64 84.03 0.73 -12.18 16 11 H 0.07 4.04 7.01 -2.91 -0.02 4.02 16 12 C -0.05 -2.58 4.89 84.86 0.42 -2.16 16 13 N -0.92 -51.50 8.60 21.65 0.19 -51.31 16 14 Si 0.95 45.72 29.62 68.60 2.03 47.76 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 C 0.19 9.13 4.21 86.38 0.36 9.50 16 19 C -0.11 -4.63 5.48 29.85 0.16 -4.47 16 20 C 0.49 19.88 8.33 71.24 0.59 20.47 16 21 O -0.56 -25.15 16.74 21.95 0.37 -24.78 16 22 O -0.52 -16.33 13.42 -51.40 -0.69 -17.02 16 23 C -0.10 -2.90 7.72 22.26 0.17 -2.73 16 24 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 27 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.05 2.15 7.97 -2.39 -0.02 2.13 16 30 H 0.08 2.64 7.76 -2.39 -0.02 2.62 16 31 H 0.25 13.77 8.31 -92.71 -0.77 12.99 16 32 H 0.06 3.54 5.81 -2.39 -0.01 3.52 16 33 H 0.03 1.26 7.93 -2.39 -0.02 1.24 16 34 H 0.09 3.38 5.96 -2.38 -0.01 3.37 16 35 H 0.11 5.40 6.33 -2.38 -0.02 5.38 16 36 H 0.42 8.73 9.10 -74.06 -0.67 8.05 16 37 H 0.14 3.50 8.00 -2.91 -0.02 3.48 16 Total: -1.00 -66.43 314.15 5.21 -61.21 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.43 Total: 17.07 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.01 Total: 3.30 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.60 Total: -81.48 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.32 Total: -41.80 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.66 Total: -6.06 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.43 5.21 -61.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607791743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.940 kcal (2) G-P(sol) polarization free energy of solvation -66.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds