Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30871 * 125.41009 * 2 1 4 4 C 1.33301 * 109.69704 * 180.31249 * 3 2 1 5 5 C 1.36780 * 107.78072 * 359.72166 * 4 3 2 6 6 C 1.46638 * 126.85449 * 180.02562 * 5 4 3 7 7 O 1.21718 * 120.00280 * 286.47252 * 6 5 4 8 8 N 1.34783 * 119.99708 * 106.47416 * 6 5 4 9 9 C 1.36883 * 119.99455 * 171.95658 * 8 6 5 10 10 H 1.08000 * 120.00435 * 109.69718 * 9 8 6 11 11 C 1.39018 * 120.00082 * 289.68742 * 9 8 6 12 12 N 1.31392 * 119.99679 * 34.79161 * 11 9 8 13 13 Si 1.86797 * 120.00254 * 214.78893 * 11 9 8 14 14 H 1.48498 * 109.46916 * 65.00193 * 13 11 9 15 15 H 1.48497 * 109.47208 * 185.00140 * 13 11 9 16 16 H 1.48496 * 109.47237 * 305.00183 * 13 11 9 17 17 C 1.46498 * 120.00408 * 351.95542 * 8 6 5 18 18 C 1.53001 * 109.46947 * 234.07538 * 17 8 6 19 19 C 1.50697 * 109.47032 * 181.15253 * 18 17 8 20 20 O 1.20826 * 119.99896 * 359.97438 * 19 18 17 21 21 O 1.34228 * 119.99993 * 179.97438 * 19 18 17 22 22 N 1.34541 * 125.41326 * 179.83725 * 2 1 3 23 23 C 1.46504 * 126.47262 * 359.96585 * 22 2 1 24 24 H 1.09008 * 109.47430 * 274.86916 * 1 2 3 25 25 H 1.09003 * 109.47135 * 34.86405 * 1 2 3 26 26 H 1.09000 * 109.47279 * 154.86637 * 1 2 3 27 27 H 1.07993 * 126.11470 * 179.75173 * 4 3 2 28 28 H 0.97005 * 120.00081 * 184.95908 * 12 11 9 29 29 H 1.09004 * 109.46510 * 354.07029 * 17 8 6 30 30 H 1.08998 * 109.47262 * 114.07152 * 17 8 6 31 31 H 1.08998 * 109.46629 * 301.14774 * 18 17 8 32 32 H 1.08997 * 109.47465 * 61.15016 * 18 17 8 33 33 H 0.96707 * 116.99916 * 179.97438 * 21 19 18 34 34 H 1.09005 * 109.46748 * 278.56673 * 23 22 2 35 35 H 1.08998 * 109.46970 * 158.57348 * 23 22 2 36 36 H 1.09000 * 109.47250 * 38.56946 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5485 0.7056 -0.0068 5 6 3.5978 -0.6613 -0.0051 6 6 4.8021 -1.4979 -0.0102 7 8 5.4671 -1.6011 -1.0244 8 7 5.1727 -2.1525 1.1082 9 6 6.1966 -3.0597 1.0626 10 1 7.1402 -2.8334 1.5369 11 6 6.0221 -4.2726 0.4060 12 7 5.2775 -4.3331 -0.6749 13 14 6.8460 -5.8160 1.0603 14 1 6.2812 -6.1520 2.3919 15 1 6.6050 -6.9415 0.1221 16 1 8.3069 -5.5815 1.1871 17 6 4.4796 -1.8931 2.3725 18 6 5.5018 -1.5144 3.4461 19 6 4.7918 -1.2752 4.7536 20 8 3.5913 -1.3947 4.8199 21 8 5.4930 -0.9292 5.8446 22 7 2.2866 -1.0965 0.0031 23 6 1.8311 -2.4889 0.0078 24 1 -0.3634 0.0872 1.0240 25 1 -0.3633 0.8432 -0.5875 26 1 -0.3634 -0.9304 -0.4365 27 1 4.3974 1.3731 -0.0123 28 1 5.0967 -5.1901 -1.0919 29 1 3.7733 -1.0737 2.2381 30 1 3.9419 -2.7891 2.6826 31 1 6.2201 -2.3255 3.5659 32 1 6.0252 -0.6069 3.1455 33 1 4.9936 -0.7860 6.6603 34 1 1.5731 -2.7834 1.0251 35 1 2.6272 -3.1328 -0.3660 36 1 0.9542 -2.5865 -0.6322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607975902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = -57.009377 kcal Electronic energy + Delta-G solvation = -22809.991034 eV Core-core repulsion = 19295.904186 eV Total energy + Delta-G solvation = -3514.086849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61307 -40.01465 -38.06920 -36.01327 -34.73132 -33.58288 -32.49876 -31.37127 -30.16827 -27.42975 -26.39448 -25.22700 -23.95246 -21.76678 -20.64933 -19.80565 -19.01573 -17.92996 -17.11413 -16.48478 -15.89959 -15.85371 -15.56641 -15.07265 -14.77060 -14.23160 -13.97701 -13.39133 -13.11497 -13.03199 -12.88224 -12.58489 -12.54829 -12.23200 -12.06196 -12.05560 -11.74197 -11.42785 -11.36221 -11.21972 -10.86756 -10.50953 -10.39942 -10.29802 -9.65595 -9.15592 -8.75988 -8.38650 -7.71405 -7.22724 -6.46993 -4.26909 2.35604 2.44296 3.04234 3.14706 3.23249 3.23674 3.27391 3.52617 4.07640 4.24896 4.71689 4.77912 4.86224 5.16713 5.23470 5.31670 5.48180 5.51531 5.63592 5.67103 5.74277 5.86828 5.93737 6.02285 6.04515 6.26346 6.35994 6.51278 6.68263 6.80443 7.15960 7.48407 7.61830 8.07964 8.20119 8.49873 8.87542 8.95038 9.27350 10.05836 10.58195 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.008354 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.660227 B = 3350.903817 C = 4853.333452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.188 3.812 3 N -0.494 5.494 4 C -0.004 4.004 5 C -0.035 4.035 6 C 0.560 3.440 7 O -0.507 6.507 8 N -0.456 5.456 9 C -0.362 4.362 10 H 0.080 0.920 11 C 0.080 3.920 12 N -0.806 5.806 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.128 3.872 18 C -0.121 4.121 19 C 0.483 3.517 20 O -0.522 6.522 21 O -0.521 6.521 22 N -0.432 5.432 23 C 0.068 3.932 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.170 0.830 28 H 0.266 0.734 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 2.916 7.593 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 N -0.214 5.214 4 C -0.154 4.154 5 C -0.153 4.153 6 C 0.345 3.655 7 O -0.380 6.380 8 N -0.181 5.181 9 C -0.488 4.488 10 H 0.098 0.902 11 C -0.134 4.134 12 N -0.435 5.435 13 Si 0.712 3.288 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.194 1.194 17 C 0.003 3.997 18 C -0.160 4.160 19 C 0.326 3.674 20 O -0.411 6.411 21 O -0.332 6.332 22 N -0.115 5.115 23 C -0.074 4.074 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.187 0.813 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.261 0.739 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.629 3.276 6.455 9.816 hybrid contribution 0.264 -1.685 0.885 1.921 sum -6.365 1.592 7.340 9.845 Atomic orbital electron populations 1.20104 0.85411 1.03265 1.03246 1.23090 0.95410 0.81700 1.07080 1.69914 1.02296 1.28203 1.20981 1.22256 0.94386 0.91275 1.07527 1.22075 0.85068 0.96239 1.11906 1.17436 0.82995 0.78935 0.86102 1.90718 1.54453 1.60603 1.32267 1.43081 1.33120 1.37427 1.04445 1.18694 0.94576 0.95078 1.40403 0.90227 1.25679 0.95830 0.99466 0.92389 1.70358 1.35943 1.25657 1.11555 0.86681 0.80584 0.82082 0.79415 1.19818 1.21213 1.19426 1.21189 0.92699 1.00197 0.85567 1.21696 1.00935 1.05520 0.87806 1.23834 0.86192 0.71557 0.85862 1.90688 1.16483 1.48240 1.85656 1.84590 1.45879 1.81398 1.21323 1.45220 1.05689 1.07615 1.53009 1.22141 1.02438 0.79745 1.03117 0.90442 0.89674 0.91219 0.81306 0.92415 0.91601 0.92468 0.86210 0.87863 0.73910 0.90608 0.87680 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.23 36.00 0.37 -0.37 16 2 C 0.19 3.30 7.88 -155.56 -1.23 2.07 16 3 N -0.49 -9.70 11.20 -10.55 -0.12 -9.82 16 4 C 0.00 -0.08 11.87 -17.44 -0.21 -0.28 16 5 C -0.03 -0.75 4.56 -82.15 -0.37 -1.13 16 6 C 0.56 14.00 6.23 -12.87 -0.08 13.92 16 7 O -0.51 -14.90 16.06 5.17 0.08 -14.82 16 8 N -0.46 -10.70 2.71 -116.31 -0.32 -11.01 16 9 C -0.36 -9.12 7.44 -15.01 -0.11 -9.24 16 10 H 0.08 1.97 7.83 -52.49 -0.41 1.55 16 11 C 0.08 2.03 5.42 -17.45 -0.09 1.94 16 12 N -0.81 -21.69 12.15 55.50 0.67 -21.01 16 13 Si 0.89 19.14 29.67 -169.99 -5.04 14.09 16 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 C 0.13 2.52 5.05 -4.04 -0.02 2.50 16 18 C -0.12 -1.99 5.71 -27.88 -0.16 -2.15 16 19 C 0.48 7.39 8.33 36.00 0.30 7.69 16 20 O -0.52 -9.35 16.74 -18.75 -0.31 -9.66 16 21 O -0.52 -6.24 13.42 -39.25 -0.53 -6.77 16 22 N -0.43 -8.16 3.17 -117.26 -0.37 -8.53 16 23 C 0.07 1.10 10.75 59.85 0.64 1.75 16 24 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.70 7.09 -51.93 -0.37 0.33 16 27 H 0.17 3.13 8.06 -52.49 -0.42 2.71 16 28 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 29 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 30 H 0.06 1.15 8.07 -51.93 -0.42 0.74 16 31 H 0.12 1.96 7.36 -51.93 -0.38 1.57 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.40 2.96 9.10 45.56 0.41 3.38 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 2.07 7.71 -51.93 -0.40 1.67 16 36 H 0.08 1.01 7.27 -51.93 -0.38 0.63 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -34.23 319.58 -5.60 -39.83 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.52 Total: 6.20 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -0.96 Total: 16.69 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.13 Total: -50.38 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.76 Total: -31.25 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.04 Total: 14.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.23 -5.60 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607975902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.179 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds