Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.89592 * 2 1 4 4 N 1.40082 * 108.20450 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03878 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47547 * 90.02060 * 5 4 3 7 7 O 1.20833 * 119.99747 * 0.02562 * 6 5 4 8 8 O 1.34230 * 120.00262 * 179.72203 * 6 5 4 9 9 C 1.34950 * 107.92515 * 0.25957 * 4 3 2 10 10 C 1.50705 * 126.12691 * 179.73411 * 9 4 3 11 11 C 1.35310 * 107.74379 * 359.58115 * 9 4 3 12 12 C 1.50707 * 126.03789 * 180.16036 * 11 9 4 13 13 N 1.46506 * 109.47021 * 270.28046 * 12 11 9 14 14 C 1.34777 * 119.99941 * 180.02562 * 13 12 11 15 15 O 1.21687 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.46374 * 120.00032 * 180.02562 * 14 13 12 17 17 H 1.08005 * 119.99978 * 359.97438 * 16 14 13 18 18 C 1.40044 * 120.00022 * 180.02562 * 16 14 13 19 19 N 1.30668 * 119.99920 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99806 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47258 * 59.99998 * 20 18 16 22 22 H 1.48504 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47234 * 299.99785 * 20 18 16 24 24 H 1.09002 * 109.47409 * 90.02860 * 1 2 3 25 25 H 1.09000 * 109.47024 * 210.02367 * 1 2 3 26 26 H 1.08999 * 109.47633 * 330.02559 * 1 2 3 27 27 H 1.09004 * 109.47039 * 330.02244 * 5 4 3 28 28 H 1.09000 * 109.47206 * 210.02787 * 5 4 3 29 29 H 0.96699 * 116.99771 * 180.27188 * 8 6 5 30 30 H 1.08996 * 109.47027 * 90.02785 * 10 9 4 31 31 H 1.08998 * 109.47283 * 210.02981 * 10 9 4 32 32 H 1.09004 * 109.47129 * 330.03076 * 10 9 4 33 33 H 1.08997 * 109.47366 * 30.28026 * 12 11 9 34 34 H 1.09004 * 109.47095 * 150.28392 * 12 11 9 35 35 H 0.96996 * 120.00068 * 0.02562 * 13 12 11 36 36 H 0.97006 * 120.00100 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5009 0.0013 6 6 5.1945 1.7975 1.4223 7 8 4.5615 1.3322 2.3404 8 8 6.2617 2.5735 1.6682 9 6 3.6142 -0.7153 -0.0049 10 6 4.8351 -1.5988 -0.0120 11 6 2.3272 -1.1329 0.0006 12 6 1.8600 -2.5658 0.0009 13 7 1.7085 -3.0303 -1.3803 14 6 1.2973 -4.2899 -1.6264 15 8 1.0522 -5.0416 -0.7013 16 6 1.1465 -4.7542 -3.0063 17 1 1.3644 -4.0872 -3.8274 18 6 0.7186 -6.0629 -3.2620 19 7 0.4545 -6.8698 -2.2687 20 14 0.5255 -6.6551 -5.0231 21 1 1.8320 -6.5616 -5.7229 22 1 0.0645 -8.0668 -5.0229 23 1 -0.4730 -5.8080 -5.7235 24 1 -0.3634 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.5564 2.4336 -0.5121 28 1 5.6094 0.9986 -0.5126 29 1 6.4848 2.7322 2.5957 30 1 5.1321 -1.8163 1.0139 31 1 4.6063 -2.5305 -0.5294 32 1 5.6499 -1.0885 -0.5257 33 1 2.5935 -3.1870 0.5147 34 1 0.9012 -2.6352 0.5147 35 1 1.9042 -2.4312 -2.1177 36 1 0.1584 -7.7764 -2.4458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608004293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = -56.269198 kcal Electronic energy + Delta-G solvation = -21655.519091 eV Core-core repulsion = 18141.464338 eV Total energy + Delta-G solvation = -3514.054752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51277 -40.33322 -37.14864 -36.54370 -34.48577 -33.48850 -32.37016 -31.50291 -29.99166 -28.04577 -26.48891 -26.16964 -24.11266 -22.11477 -19.85133 -19.42911 -19.27962 -18.60219 -17.35934 -17.10216 -16.40278 -16.13686 -15.29071 -14.92597 -14.32509 -14.06109 -13.86628 -13.66005 -13.47039 -13.18490 -13.03901 -12.61200 -12.53789 -12.26248 -12.19143 -11.93991 -11.80020 -11.59819 -11.23232 -11.12765 -11.02105 -10.82216 -10.41752 -10.27405 -10.19708 -9.02201 -8.79675 -8.35277 -7.48111 -7.38373 -6.12414 -4.57963 1.65087 1.75361 2.16944 2.85145 2.86511 3.18766 3.23712 3.25682 4.16061 4.21631 4.61301 4.62452 4.65466 4.77472 4.94098 5.06618 5.24713 5.45458 5.53110 5.63593 5.77196 5.84838 5.90211 5.95330 6.04774 6.10867 6.27180 6.51300 6.67403 6.84956 7.00220 7.45032 7.48405 7.80177 8.01796 8.19264 8.40722 9.08063 9.63902 10.66476 10.86050 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.003625 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.300587 B = 7721.475692 C = 7967.529212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.102 3.898 3 N -0.297 5.297 4 N -0.375 5.375 5 C 0.150 3.850 6 C 0.458 3.542 7 O -0.491 6.491 8 O -0.516 6.516 9 C 0.106 3.894 10 C -0.097 4.097 11 C -0.229 4.229 12 C 0.210 3.790 13 N -0.762 5.762 14 C 0.556 3.444 15 O -0.582 6.582 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.414 0.586 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.379 0.621 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 17.161 3.138 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 N -0.118 5.118 4 N -0.159 5.159 5 C 0.026 3.974 6 C 0.297 3.703 7 O -0.377 6.377 8 O -0.328 6.328 9 C -0.019 4.019 10 C -0.155 4.155 11 C -0.240 4.240 12 C 0.085 3.915 13 N -0.417 5.417 14 C 0.359 3.641 15 O -0.465 6.465 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.274 0.726 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.210 0.790 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.170 17.553 3.772 20.634 hybrid contribution 0.281 -0.564 -0.510 0.810 sum 10.451 16.989 3.263 20.211 Atomic orbital electron populations 1.20221 0.86381 1.03242 1.03381 1.22290 0.96958 0.90111 0.97213 1.77285 0.85429 1.22399 1.26667 1.47680 1.04477 1.03609 1.60084 1.20759 0.87217 0.98333 0.91097 1.23853 0.77739 0.75542 0.93211 1.90822 1.52171 1.48256 1.46421 1.84481 1.46412 1.65104 1.36818 1.20866 0.97303 0.83638 1.00101 1.20544 0.92390 0.99123 1.03436 1.20044 0.90938 0.96986 1.16043 1.19047 0.99403 0.86212 0.86881 1.46216 1.75421 1.15332 1.04758 1.18194 0.76579 0.78847 0.90455 1.90600 1.54851 1.54508 1.46537 1.20850 1.48442 0.97896 0.91085 0.91620 1.25689 0.93087 0.96410 0.97952 1.70013 1.32350 1.05661 1.31760 0.86468 0.79217 0.77943 0.83276 1.19384 1.20638 1.19336 0.90113 0.89893 0.91249 0.84590 0.84788 0.72610 0.90196 0.88385 0.91495 0.92957 0.92586 0.78997 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.26 36.01 0.37 -0.66 16 2 C 0.10 1.67 7.22 -82.41 -0.59 1.07 16 3 N -0.30 -4.77 12.58 33.67 0.42 -4.35 16 4 N -0.38 -5.15 3.10 -58.31 -0.18 -5.33 16 5 C 0.15 1.32 6.84 -5.20 -0.04 1.29 16 6 C 0.46 4.53 8.40 36.00 0.30 4.83 16 7 O -0.49 -7.18 17.19 -18.76 -0.32 -7.50 16 8 O -0.52 -3.29 13.42 -39.26 -0.53 -3.82 16 9 C 0.11 1.57 6.93 -82.26 -0.57 1.00 16 10 C -0.10 -1.14 9.72 36.01 0.35 -0.79 16 11 C -0.23 -3.91 5.47 -105.05 -0.57 -4.48 16 12 C 0.21 4.21 5.57 -5.19 -0.03 4.18 16 13 N -0.76 -17.11 5.54 -62.90 -0.35 -17.46 16 14 C 0.56 15.75 7.75 -12.99 -0.10 15.65 16 15 O -0.58 -18.83 15.02 5.20 0.08 -18.75 16 16 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 16 17 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 18 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 19 N -0.77 -23.10 11.83 55.55 0.66 -22.45 16 20 Si 0.91 20.14 29.56 -169.99 -5.02 15.12 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.08 1.18 7.26 -51.93 -0.38 0.80 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.13 0.73 7.04 -51.93 -0.37 0.37 16 29 H 0.41 1.12 9.10 45.56 0.41 1.54 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.31 7.79 -51.93 -0.40 0.91 16 32 H 0.07 0.57 7.08 -51.93 -0.37 0.21 16 33 H 0.05 1.09 7.79 -51.93 -0.40 0.68 16 34 H 0.06 1.18 7.26 -51.93 -0.38 0.80 16 35 H 0.38 7.75 8.44 -40.82 -0.34 7.41 16 36 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -39.30 323.22 -5.15 -44.46 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.46 Total: 6.49 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.32 Total: 8.72 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.55 Total: -49.59 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.77 Total: -30.08 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -39.30 -5.15 -44.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608004293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.813 kcal (2) G-P(sol) polarization free energy of solvation -39.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds