Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.89592 * 2 1 4 4 N 1.40082 * 108.20450 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03878 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47547 * 90.02060 * 5 4 3 7 7 O 1.20833 * 119.99747 * 0.02562 * 6 5 4 8 8 O 1.34230 * 120.00262 * 179.72203 * 6 5 4 9 9 C 1.34950 * 107.92515 * 0.25957 * 4 3 2 10 10 C 1.50705 * 126.12691 * 179.73411 * 9 4 3 11 11 C 1.35310 * 107.74379 * 359.58115 * 9 4 3 12 12 C 1.50707 * 126.03789 * 180.16036 * 11 9 4 13 13 N 1.46506 * 109.47021 * 270.28046 * 12 11 9 14 14 C 1.34777 * 119.99941 * 180.02562 * 13 12 11 15 15 O 1.21687 * 119.99924 * 359.97438 * 14 13 12 16 16 C 1.46374 * 120.00032 * 180.02562 * 14 13 12 17 17 H 1.08005 * 119.99978 * 359.97438 * 16 14 13 18 18 C 1.40044 * 120.00022 * 180.02562 * 16 14 13 19 19 N 1.30668 * 119.99920 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99806 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47258 * 59.99998 * 20 18 16 22 22 H 1.48504 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47234 * 299.99785 * 20 18 16 24 24 H 1.09002 * 109.47409 * 90.02860 * 1 2 3 25 25 H 1.09000 * 109.47024 * 210.02367 * 1 2 3 26 26 H 1.08999 * 109.47633 * 330.02559 * 1 2 3 27 27 H 1.09004 * 109.47039 * 330.02244 * 5 4 3 28 28 H 1.09000 * 109.47206 * 210.02787 * 5 4 3 29 29 H 0.96699 * 116.99771 * 180.27188 * 8 6 5 30 30 H 1.08996 * 109.47027 * 90.02785 * 10 9 4 31 31 H 1.08998 * 109.47283 * 210.02981 * 10 9 4 32 32 H 1.09004 * 109.47129 * 330.03076 * 10 9 4 33 33 H 1.08997 * 109.47366 * 30.28026 * 12 11 9 34 34 H 1.09004 * 109.47095 * 150.28392 * 12 11 9 35 35 H 0.96996 * 120.00068 * 0.02562 * 13 12 11 36 36 H 0.97006 * 120.00100 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5009 0.0013 6 6 5.1945 1.7975 1.4223 7 8 4.5615 1.3322 2.3404 8 8 6.2617 2.5735 1.6682 9 6 3.6142 -0.7153 -0.0049 10 6 4.8351 -1.5988 -0.0120 11 6 2.3272 -1.1329 0.0006 12 6 1.8600 -2.5658 0.0009 13 7 1.7085 -3.0303 -1.3803 14 6 1.2973 -4.2899 -1.6264 15 8 1.0522 -5.0416 -0.7013 16 6 1.1465 -4.7542 -3.0063 17 1 1.3644 -4.0872 -3.8274 18 6 0.7186 -6.0629 -3.2620 19 7 0.4545 -6.8698 -2.2687 20 14 0.5255 -6.6551 -5.0231 21 1 1.8320 -6.5616 -5.7229 22 1 0.0645 -8.0668 -5.0229 23 1 -0.4730 -5.8080 -5.7235 24 1 -0.3634 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 4.5564 2.4336 -0.5121 28 1 5.6094 0.9986 -0.5126 29 1 6.4848 2.7322 2.5957 30 1 5.1321 -1.8163 1.0139 31 1 4.6063 -2.5305 -0.5294 32 1 5.6499 -1.0885 -0.5257 33 1 2.5935 -3.1870 0.5147 34 1 0.9012 -2.6352 0.5147 35 1 1.9042 -2.4312 -2.1177 36 1 0.1584 -7.7764 -2.4458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608004293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = -87.816289 kcal Electronic energy + Delta-G solvation = -21656.887075 eV Core-core repulsion = 18141.464338 eV Total energy + Delta-G solvation = -3515.422737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.61888 -41.15483 -39.22816 -37.26639 -35.82135 -34.99710 -34.42121 -32.89310 -31.06861 -29.56212 -28.02441 -27.47510 -25.62047 -22.95568 -21.72975 -20.83013 -20.40697 -19.32941 -19.17275 -18.06120 -17.44245 -17.28753 -17.02944 -16.25928 -15.92834 -15.58689 -15.51101 -14.79316 -14.51778 -14.32958 -14.19471 -14.13186 -13.80526 -13.51804 -13.26288 -13.08419 -13.06128 -12.94995 -12.74222 -12.65572 -12.60354 -12.52170 -12.02686 -11.89720 -11.54014 -10.87091 -10.13424 -9.97330 -9.38586 -9.36925 -8.22394 -6.79282 0.59330 1.01929 1.22259 1.43222 1.47076 1.56210 1.59882 2.12133 2.29990 2.53499 3.34605 3.45842 3.59114 3.69493 3.92327 4.01104 4.11467 4.17907 4.25574 4.35987 4.58408 4.60718 4.72043 4.86437 4.95785 4.98704 5.10597 5.21812 5.36916 5.47428 5.61799 5.93265 5.94375 6.28593 6.35216 6.61525 6.83783 6.92481 7.63776 8.56163 8.73863 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.003625 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.300587 B = 7721.475692 C = 7967.529212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.090 3.910 3 N -0.312 5.312 4 N -0.368 5.368 5 C 0.137 3.863 6 C 0.469 3.531 7 O -0.547 6.547 8 O -0.500 6.500 9 C 0.118 3.882 10 C -0.095 4.095 11 C -0.263 4.263 12 C 0.223 3.777 13 N -0.744 5.744 14 C 0.540 3.460 15 O -0.633 6.633 16 C -0.572 4.572 17 H 0.086 0.914 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.997 3.003 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.256 1.256 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.176 0.824 29 H 0.432 0.568 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.391 0.609 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 18.878 1.068 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 N -0.134 5.134 4 N -0.151 5.151 5 C 0.015 3.985 6 C 0.310 3.690 7 O -0.437 6.437 8 O -0.313 6.313 9 C -0.009 4.009 10 C -0.153 4.153 11 C -0.274 4.274 12 C 0.098 3.902 13 N -0.398 5.398 14 C 0.344 3.656 15 O -0.521 6.521 16 C -0.609 4.609 17 H 0.104 0.896 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.816 3.184 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.180 1.180 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.180 0.820 28 H 0.194 0.806 29 H 0.295 0.705 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.224 0.776 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.091 19.379 1.699 22.904 hybrid contribution -0.151 -0.946 0.217 0.982 sum 11.939 18.433 1.916 22.045 Atomic orbital electron populations 1.20240 0.85553 1.03489 1.03793 1.22524 0.97862 0.89951 0.97392 1.77213 0.86649 1.22392 1.27122 1.47972 1.04989 1.03755 1.58356 1.21378 0.86565 0.99374 0.91151 1.23933 0.77456 0.74639 0.92929 1.90825 1.54141 1.50683 1.48034 1.84440 1.44664 1.63678 1.38536 1.21197 0.97383 0.84612 0.97712 1.20634 0.92391 0.98178 1.04147 1.19778 0.92559 0.95262 1.19804 1.18833 0.98142 0.88288 0.84959 1.45881 1.73742 1.13814 1.06380 1.18576 0.76434 0.80075 0.90468 1.90555 1.57193 1.56449 1.47873 1.21377 1.48856 0.99062 0.91574 0.89631 1.26946 0.91792 0.96191 1.03632 1.70190 1.33405 1.06385 1.35217 0.85091 0.79962 0.77399 0.75935 1.17769 1.20064 1.17978 0.89559 0.90965 0.89645 0.81992 0.80645 0.70519 0.89600 0.90236 0.87310 0.94317 0.94481 0.77616 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.26 71.24 0.73 -1.32 16 2 C 0.09 2.94 7.22 43.10 0.31 3.25 16 3 N -0.31 -9.70 12.58 -47.39 -0.60 -10.29 16 4 N -0.37 -9.33 3.10 -338.40 -1.05 -10.38 16 5 C 0.14 1.91 6.84 85.63 0.59 2.49 16 6 C 0.47 7.99 8.40 71.23 0.60 8.59 16 7 O -0.55 -15.32 17.19 21.94 0.38 -14.95 16 8 O -0.50 -4.67 13.42 -51.41 -0.69 -5.36 16 9 C 0.12 3.36 6.93 41.41 0.29 3.64 16 10 C -0.10 -2.07 9.72 71.24 0.69 -1.38 16 11 C -0.26 -9.06 5.47 -20.14 -0.11 -9.17 16 12 C 0.22 9.34 5.57 85.63 0.48 9.82 16 13 N -0.74 -34.35 5.54 -471.12 -2.61 -36.96 16 14 C 0.54 31.65 7.75 86.36 0.67 32.32 16 15 O -0.63 -42.94 15.02 -4.31 -0.06 -43.01 16 16 C -0.57 -32.52 9.54 24.83 0.24 -32.28 16 17 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 18 C 0.03 1.64 5.50 85.30 0.47 2.11 16 19 N -0.82 -50.68 11.83 21.83 0.26 -50.42 16 20 Si 1.00 40.94 29.56 68.60 2.03 42.97 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.16 7.26 -2.39 -0.02 2.15 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 27 H 0.16 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.18 0.98 7.04 -2.39 -0.02 0.96 16 29 H 0.43 1.05 9.10 -74.06 -0.67 0.38 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 32 H 0.11 1.41 7.08 -2.39 -0.02 1.40 16 33 H 0.04 1.70 7.79 -2.39 -0.02 1.69 16 34 H 0.04 1.67 7.26 -2.38 -0.02 1.66 16 35 H 0.39 16.10 8.44 -92.71 -0.78 15.32 16 36 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 Total: -1.00 -89.05 323.22 2.29 -86.77 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.31 Total: 23.56 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 4.95 Total: 18.07 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.00 Total: -108.05 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -0.38 Total: -63.31 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -89.05 2.29 -86.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608004293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.049 kcal (2) G-P(sol) polarization free energy of solvation -89.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds