Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30445 * 125.98303 * 2 1 4 4 N 1.39935 * 108.91351 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.75556 * 180.02562 * 4 3 2 6 6 C 1.34293 * 108.49385 * 359.75500 * 4 3 2 7 7 C 1.38102 * 107.40559 * 0.39281 * 6 4 3 8 8 C 1.47355 * 126.42181 * 179.87158 * 7 6 4 9 9 O 1.21632 * 120.00183 * 172.37788 * 8 7 6 10 10 N 1.34778 * 120.00236 * 352.10275 * 8 7 6 11 11 C 1.36987 * 119.99618 * 3.48125 * 10 8 7 12 12 H 1.08003 * 119.99905 * 304.90337 * 11 10 8 13 13 C 1.38974 * 119.99954 * 124.90711 * 11 10 8 14 14 N 1.31411 * 119.99724 * 183.92460 * 13 11 10 15 15 Si 1.86800 * 119.99822 * 3.92221 * 13 11 10 16 16 H 1.48505 * 109.46959 * 94.64828 * 15 13 11 17 17 H 1.48504 * 109.46908 * 214.64774 * 15 13 11 18 18 H 1.48499 * 109.47436 * 334.64792 * 15 13 11 19 19 C 1.46491 * 120.00210 * 183.48257 * 10 8 7 20 20 C 1.53000 * 109.47587 * 84.78474 * 19 10 8 21 21 C 1.50696 * 109.47510 * 180.02562 * 20 19 10 22 22 O 1.20829 * 119.99917 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00207 * 179.97438 * 21 20 19 24 24 H 1.08994 * 109.46763 * 270.03464 * 1 2 3 25 25 H 1.08997 * 109.47338 * 30.03501 * 1 2 3 26 26 H 1.09004 * 109.46676 * 150.03878 * 1 2 3 27 27 H 1.09005 * 109.46990 * 89.97083 * 5 4 3 28 28 H 1.08989 * 109.47701 * 209.97677 * 5 4 3 29 29 H 1.09004 * 109.46593 * 329.98258 * 5 4 3 30 30 H 1.08003 * 126.29231 * 180.24414 * 6 4 3 31 31 H 0.97002 * 119.99688 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.47084 * 204.78391 * 19 10 8 33 33 H 1.09004 * 109.47456 * 324.78171 * 19 10 8 34 34 H 1.09008 * 109.46841 * 300.00066 * 20 19 10 35 35 H 1.09004 * 109.46969 * 59.99399 * 20 19 10 36 36 H 0.96697 * 117.00190 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6112 0.6448 0.0006 5 6 4.7784 1.5300 0.0013 6 6 3.6445 -0.6977 0.0064 7 6 2.3374 -1.1435 0.0005 8 6 1.8921 -2.5481 0.0010 9 8 0.7124 -2.8121 0.1351 10 7 2.7913 -3.5403 -0.1526 11 6 4.1267 -3.2471 -0.2377 12 1 4.4799 -2.5488 -0.9821 13 6 5.0270 -3.8483 0.6338 14 7 6.2964 -3.5098 0.6036 15 14 4.4326 -5.1375 1.8479 16 1 4.6251 -6.4906 1.2670 17 1 5.2090 -5.0251 3.1088 18 1 2.9913 -4.9217 2.1331 19 6 2.3406 -4.9320 -0.2286 20 6 1.9431 -5.2616 -1.6688 21 6 1.4789 -6.6931 -1.7468 22 8 1.4676 -7.3796 -0.7526 23 8 1.0779 -7.2057 -2.9208 24 1 -0.3632 0.0006 1.0276 25 1 -0.3634 0.8896 -0.5144 26 1 -0.3633 -0.8904 -0.5133 27 1 5.0671 1.7498 1.0292 28 1 5.6061 1.0405 -0.5118 29 1 4.5304 2.4586 -0.5128 30 1 4.5307 -1.3151 0.0120 31 1 6.9247 -3.9291 1.2122 32 1 3.1483 -5.5932 0.0857 33 1 1.4808 -5.0719 0.4267 34 1 1.1354 -4.6004 -1.9831 35 1 2.8029 -5.1217 -2.3241 36 1 0.7892 -8.1285 -2.9213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608004447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -37.642361 kcal Electronic energy + Delta-G solvation = -22532.568283 eV Core-core repulsion = 19019.321251 eV Total energy + Delta-G solvation = -3513.247032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66431 -39.99115 -38.40656 -35.96833 -35.15443 -33.29535 -32.52298 -31.17901 -29.44825 -28.76670 -25.62951 -25.18244 -24.16734 -21.37094 -20.87029 -19.44762 -18.87410 -17.93730 -17.48726 -16.44492 -16.09216 -15.55743 -15.34985 -15.08746 -14.57270 -14.13935 -13.93125 -13.31377 -13.22126 -13.08840 -12.88323 -12.67526 -12.46707 -12.12408 -12.02022 -11.72897 -11.61691 -11.40194 -11.31446 -11.24356 -10.81584 -10.34946 -10.27168 -10.08867 -9.90268 -9.11560 -8.74100 -8.62956 -7.91228 -7.65745 -6.60092 -4.46293 2.42408 2.48878 2.87019 3.01061 3.09737 3.21430 3.28439 3.30367 4.05765 4.42767 4.50359 4.75736 4.96564 5.34678 5.44489 5.48814 5.50209 5.64870 5.66129 5.76572 6.04240 6.04610 6.16613 6.18341 6.29946 6.45976 6.54442 6.59012 6.65776 6.71680 7.23916 7.37373 7.64610 7.94726 8.01844 8.13599 8.30482 8.83562 9.24648 9.62736 10.44665 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.006990 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.933653 B = 4004.631366 C = 5153.325972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.117 3.883 3 N -0.331 5.331 4 N -0.383 5.383 5 C 0.105 3.895 6 C 0.118 3.882 7 C -0.277 4.277 8 C 0.578 3.422 9 O -0.591 6.591 10 N -0.476 5.476 11 C -0.353 4.353 12 H 0.107 0.893 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.881 3.119 16 H -0.271 1.271 17 H -0.288 1.288 18 H -0.255 1.255 19 C 0.122 3.878 20 C -0.125 4.125 21 C 0.484 3.516 22 O -0.520 6.520 23 O -0.521 6.521 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.278 0.722 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 2.071 -4.019 5.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.051 4.051 3 N -0.153 5.153 4 N -0.162 5.162 5 C -0.037 4.037 6 C -0.031 4.031 7 C -0.291 4.291 8 C 0.369 3.631 9 O -0.476 6.476 10 N -0.198 5.198 11 C -0.480 4.480 12 H 0.124 0.876 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.708 3.292 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.179 1.179 19 C -0.001 4.001 20 C -0.164 4.164 21 C 0.327 3.673 22 O -0.408 6.408 23 O -0.332 6.332 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.244 0.756 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.871 3.513 -3.597 5.790 hybrid contribution 0.084 -2.259 0.604 2.340 sum -2.787 1.254 -2.994 4.278 Atomic orbital electron populations 1.20179 0.86639 1.02933 1.02779 1.22355 0.96668 0.89559 0.96481 1.76898 0.86855 1.23226 1.28341 1.48401 1.05191 1.05780 1.56794 1.21782 0.84618 0.94233 1.03046 1.25381 1.02067 0.83001 0.92614 1.20068 0.92015 0.94000 1.23003 1.17523 0.84827 0.84093 0.76638 1.90600 1.17572 1.84589 1.54813 1.43386 1.06757 1.02931 1.66682 1.19037 0.80310 1.30444 1.18252 0.87559 1.25541 0.95061 0.97036 0.95927 1.69618 1.02336 1.41060 1.37203 0.86803 0.80387 0.81485 0.80542 1.19663 1.21494 1.17869 1.21386 1.00099 0.85575 0.93035 1.21843 1.03945 0.88265 1.02374 1.23760 0.72816 0.90858 0.79914 1.90701 1.51161 1.61944 1.37018 1.84584 1.77508 1.34164 1.36957 0.90980 0.92095 0.89142 0.91177 0.89202 0.89958 0.75574 0.91124 0.91213 0.90399 0.87373 0.87017 0.73895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.86 36.01 0.35 -0.78 16 2 C 0.12 2.36 7.26 -82.01 -0.60 1.77 16 3 N -0.33 -6.49 12.50 33.90 0.42 -6.07 16 4 N -0.38 -6.95 3.98 -67.58 -0.27 -7.21 16 5 C 0.10 1.34 11.44 59.85 0.68 2.02 16 6 C 0.12 2.39 9.75 -16.52 -0.16 2.23 16 7 C -0.28 -6.04 6.03 -105.07 -0.63 -6.68 16 8 C 0.58 13.43 7.59 -12.55 -0.10 13.34 16 9 O -0.59 -14.32 14.67 5.25 0.08 -14.25 16 10 N -0.48 -10.86 2.06 -116.05 -0.24 -11.10 16 11 C -0.35 -8.26 6.76 -14.98 -0.10 -8.36 16 12 H 0.11 2.53 6.17 -52.48 -0.32 2.21 16 13 C 0.07 1.77 5.49 -17.46 -0.10 1.67 16 14 N -0.87 -21.52 13.96 55.50 0.77 -20.74 16 15 Si 0.88 20.24 24.85 -169.99 -4.22 16.02 16 16 H -0.27 -6.20 7.10 56.52 0.40 -5.80 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.25 -6.06 6.33 56.52 0.36 -5.71 16 19 C 0.12 2.63 2.73 -4.05 -0.01 2.62 16 20 C -0.13 -2.23 6.10 -27.89 -0.17 -2.40 16 21 C 0.48 8.09 8.33 36.00 0.30 8.39 16 22 O -0.52 -10.22 16.74 -18.75 -0.31 -10.53 16 23 O -0.52 -6.73 13.42 -39.26 -0.53 -7.26 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.61 6.73 -51.93 -0.35 1.26 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.00 8.14 -51.94 -0.42 0.58 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.23 4.80 4.76 -52.48 -0.25 4.55 16 31 H 0.28 6.60 8.31 -40.82 -0.34 6.27 16 32 H 0.07 1.56 4.09 -51.92 -0.21 1.35 16 33 H 0.08 1.76 7.43 -51.93 -0.39 1.38 16 34 H 0.11 1.87 8.14 -51.92 -0.42 1.45 16 35 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.40 3.29 9.10 45.56 0.41 3.70 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -30.71 307.64 -3.43 -34.14 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.24 Total: 8.53 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -0.52 Total: 13.83 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.69 Total: -45.12 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.76 Total: -32.03 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.22 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.71 -3.43 -34.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608004447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.502 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds