Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30445 * 125.98303 * 2 1 4 4 N 1.39935 * 108.91351 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.75556 * 180.02562 * 4 3 2 6 6 C 1.34293 * 108.49385 * 359.75500 * 4 3 2 7 7 C 1.38102 * 107.40559 * 0.39281 * 6 4 3 8 8 C 1.47355 * 126.42181 * 179.87158 * 7 6 4 9 9 O 1.21632 * 120.00183 * 172.37788 * 8 7 6 10 10 N 1.34778 * 120.00236 * 352.10275 * 8 7 6 11 11 C 1.36987 * 119.99618 * 3.48125 * 10 8 7 12 12 H 1.08003 * 119.99905 * 304.90337 * 11 10 8 13 13 C 1.38974 * 119.99954 * 124.90711 * 11 10 8 14 14 N 1.31411 * 119.99724 * 183.92460 * 13 11 10 15 15 Si 1.86800 * 119.99822 * 3.92221 * 13 11 10 16 16 H 1.48505 * 109.46959 * 94.64828 * 15 13 11 17 17 H 1.48504 * 109.46908 * 214.64774 * 15 13 11 18 18 H 1.48499 * 109.47436 * 334.64792 * 15 13 11 19 19 C 1.46491 * 120.00210 * 183.48257 * 10 8 7 20 20 C 1.53000 * 109.47587 * 84.78474 * 19 10 8 21 21 C 1.50696 * 109.47510 * 180.02562 * 20 19 10 22 22 O 1.20829 * 119.99917 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00207 * 179.97438 * 21 20 19 24 24 H 1.08994 * 109.46763 * 270.03464 * 1 2 3 25 25 H 1.08997 * 109.47338 * 30.03501 * 1 2 3 26 26 H 1.09004 * 109.46676 * 150.03878 * 1 2 3 27 27 H 1.09005 * 109.46990 * 89.97083 * 5 4 3 28 28 H 1.08989 * 109.47701 * 209.97677 * 5 4 3 29 29 H 1.09004 * 109.46593 * 329.98258 * 5 4 3 30 30 H 1.08003 * 126.29231 * 180.24414 * 6 4 3 31 31 H 0.97002 * 119.99688 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.47084 * 204.78391 * 19 10 8 33 33 H 1.09004 * 109.47456 * 324.78171 * 19 10 8 34 34 H 1.09008 * 109.46841 * 300.00066 * 20 19 10 35 35 H 1.09004 * 109.46969 * 59.99399 * 20 19 10 36 36 H 0.96697 * 117.00190 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6112 0.6448 0.0006 5 6 4.7784 1.5300 0.0013 6 6 3.6445 -0.6977 0.0064 7 6 2.3374 -1.1435 0.0005 8 6 1.8921 -2.5481 0.0010 9 8 0.7124 -2.8121 0.1351 10 7 2.7913 -3.5403 -0.1526 11 6 4.1267 -3.2471 -0.2377 12 1 4.4799 -2.5488 -0.9821 13 6 5.0270 -3.8483 0.6338 14 7 6.2964 -3.5098 0.6036 15 14 4.4326 -5.1375 1.8479 16 1 4.6251 -6.4906 1.2670 17 1 5.2090 -5.0251 3.1088 18 1 2.9913 -4.9217 2.1331 19 6 2.3406 -4.9320 -0.2286 20 6 1.9431 -5.2616 -1.6688 21 6 1.4789 -6.6931 -1.7468 22 8 1.4676 -7.3796 -0.7526 23 8 1.0779 -7.2057 -2.9208 24 1 -0.3632 0.0006 1.0276 25 1 -0.3634 0.8896 -0.5144 26 1 -0.3633 -0.8904 -0.5133 27 1 5.0671 1.7498 1.0292 28 1 5.6061 1.0405 -0.5118 29 1 4.5304 2.4586 -0.5128 30 1 4.5307 -1.3151 0.0120 31 1 6.9247 -3.9291 1.2122 32 1 3.1483 -5.5932 0.0857 33 1 1.4808 -5.0719 0.4267 34 1 1.1354 -4.6004 -1.9831 35 1 2.8029 -5.1217 -2.3241 36 1 0.7892 -8.1285 -2.9213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608004447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -59.176081 kcal Electronic energy + Delta-G solvation = -22533.502055 eV Core-core repulsion = 19019.321251 eV Total energy + Delta-G solvation = -3514.180804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21065 -41.33963 -40.11425 -37.27490 -36.87861 -34.69380 -34.30273 -32.82966 -30.92393 -30.13233 -27.21101 -26.84179 -25.66441 -22.90050 -22.29665 -21.08440 -20.54364 -19.36046 -18.98048 -17.99786 -17.64498 -17.03791 -16.87665 -16.52402 -16.22072 -15.81843 -15.61360 -14.85437 -14.75302 -14.44588 -14.39142 -14.07967 -13.95658 -13.77559 -13.41317 -13.23600 -13.10703 -12.89154 -12.82775 -12.58779 -12.50786 -12.02116 -11.78643 -11.68766 -11.66630 -10.96411 -10.53189 -10.10353 -9.64376 -9.31957 -8.48963 -6.33545 0.83450 1.15956 1.21573 1.28881 1.35422 1.43551 1.67976 1.99538 2.18646 2.65724 2.84333 2.93562 3.63509 3.85420 3.91305 4.12447 4.36859 4.38074 4.48630 4.52954 4.59223 4.60459 4.73095 4.75669 4.85531 4.91766 4.99716 5.09825 5.18273 5.55090 5.57243 5.74759 6.07618 6.16832 6.21933 6.77118 6.96753 6.97865 7.42775 7.81955 8.57923 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.006990 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.933653 B = 4004.631366 C = 5153.325972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.107 3.893 3 N -0.334 5.334 4 N -0.375 5.375 5 C 0.093 3.907 6 C 0.120 3.880 7 C -0.307 4.307 8 C 0.571 3.429 9 O -0.608 6.608 10 N -0.482 5.482 11 C -0.339 4.339 12 H 0.104 0.896 13 C 0.052 3.948 14 N -0.886 5.886 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.121 3.879 20 C -0.119 4.119 21 C 0.496 3.504 22 O -0.553 6.553 23 O -0.505 6.505 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.220 0.780 31 H 0.281 0.719 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 2.753 -4.855 6.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.060 4.060 3 N -0.157 5.157 4 N -0.153 5.153 5 C -0.047 4.047 6 C -0.030 4.030 7 C -0.322 4.322 8 C 0.364 3.636 9 O -0.494 6.494 10 N -0.203 5.203 11 C -0.466 4.466 12 H 0.121 0.879 13 C -0.154 4.154 14 N -0.522 5.522 15 Si 0.739 3.261 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.002 4.002 20 C -0.158 4.158 21 C 0.340 3.660 22 O -0.445 6.445 23 O -0.319 6.319 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.236 0.764 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.839 4.195 -4.461 6.749 hybrid contribution 0.072 -2.421 0.810 2.554 sum -2.767 1.773 -3.651 4.912 Atomic orbital electron populations 1.20205 0.84900 1.03566 1.03404 1.22759 0.97999 0.88995 0.96275 1.76866 0.87461 1.23034 1.28293 1.48791 1.05962 1.05625 1.54952 1.22236 0.83286 0.94413 1.04756 1.25081 1.01168 0.84112 0.92677 1.20177 0.93203 0.93760 1.25025 1.17804 0.84692 0.84830 0.76309 1.90572 1.18130 1.85011 1.55658 1.43461 1.06563 1.03443 1.66859 1.18970 0.80388 1.29715 1.17557 0.87939 1.25766 0.95233 0.97835 0.96610 1.69631 1.02650 1.41897 1.38022 0.86352 0.78932 0.80871 0.79950 1.19611 1.21372 1.19704 1.21298 0.98945 0.84712 0.95240 1.21641 1.04719 0.89514 0.99921 1.23352 0.72232 0.90190 0.80249 1.90701 1.52773 1.62627 1.38376 1.84503 1.76643 1.36185 1.34524 0.90285 0.89568 0.90309 0.89540 0.87501 0.87870 0.76403 0.90849 0.92233 0.92174 0.86836 0.85750 0.71013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.04 9.86 71.24 0.70 -1.34 16 2 C 0.11 4.22 7.26 43.52 0.32 4.53 16 3 N -0.33 -12.52 12.50 -46.66 -0.58 -13.11 16 4 N -0.37 -12.95 3.98 -367.71 -1.46 -14.42 16 5 C 0.09 2.11 11.44 127.77 1.46 3.57 16 6 C 0.12 4.79 9.75 84.28 0.82 5.62 16 7 C -0.31 -13.32 6.03 -20.15 -0.12 -13.44 16 8 C 0.57 26.69 7.59 86.64 0.66 27.35 16 9 O -0.61 -29.70 14.67 -4.13 -0.06 -29.76 16 10 N -0.48 -22.04 2.06 -639.30 -1.31 -23.36 16 11 C -0.34 -15.79 6.76 84.06 0.57 -15.22 16 12 H 0.10 4.86 6.17 -2.91 -0.02 4.85 16 13 C 0.05 2.52 5.49 84.93 0.47 2.98 16 14 N -0.89 -43.48 13.96 21.67 0.30 -43.18 16 15 Si 0.91 41.66 24.85 68.60 1.70 43.37 16 16 H -0.27 -12.23 7.10 99.48 0.71 -11.52 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -13.14 6.33 99.48 0.63 -12.51 16 19 C 0.12 5.23 2.73 86.38 0.24 5.47 16 20 C -0.12 -4.13 6.10 29.85 0.18 -3.95 16 21 C 0.50 15.91 8.33 71.23 0.59 16.51 16 22 O -0.55 -21.39 16.74 21.96 0.37 -21.03 16 23 O -0.51 -11.74 13.42 -51.41 -0.69 -12.43 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.08 2.77 6.73 -2.39 -0.02 2.75 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.22 9.15 4.76 -2.91 -0.01 9.14 16 31 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.06 2.68 4.09 -2.38 -0.01 2.67 16 33 H 0.06 2.78 7.43 -2.39 -0.02 2.76 16 34 H 0.11 3.83 8.14 -2.38 -0.02 3.81 16 35 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.43 5.70 9.10 -74.06 -0.67 5.02 16 Total: -1.00 -64.76 307.64 4.53 -60.23 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.39 Total: 21.60 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 5.88 Total: 32.07 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.06 Total: -94.06 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -0.38 Total: -63.21 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.70 Total: 43.37 kcal Total: -64.76 4.53 -60.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608004447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.049 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds