Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30170 * 126.80728 * 2 1 4 4 O 1.20894 * 111.74054 * 179.97438 * 3 2 1 5 5 C 1.34289 * 111.63094 * 359.72578 * 4 3 2 6 6 C 1.35853 * 106.35591 * 0.43870 * 5 4 3 7 7 N 1.40779 * 128.05884 * 179.86033 * 6 5 4 8 8 C 1.34770 * 119.99807 * 359.67370 * 7 6 5 9 9 O 1.21597 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99924 * 180.02562 * 8 7 6 11 11 C 1.47419 * 125.64850 * 359.97438 * 10 8 7 12 12 C 1.54905 * 104.83258 * 155.91019 * 11 10 8 13 13 C 1.55153 * 101.58432 * 37.00633 * 12 11 10 14 14 O 1.42899 * 110.72123 * 83.04292 * 13 12 11 15 15 C 1.50702 * 110.72079 * 206.13591 * 13 12 11 16 16 H 1.08002 * 120.00299 * 357.56389 * 15 13 12 17 17 C 1.37884 * 119.99942 * 177.27948 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47319 * 125.61416 * 180.20438 * 10 8 7 24 24 H 1.09000 * 109.46878 * 270.00718 * 1 2 3 25 25 H 1.09005 * 109.46707 * 30.00077 * 1 2 3 26 26 H 1.08994 * 109.47089 * 149.99881 * 1 2 3 27 27 H 1.08004 * 126.82368 * 180.29929 * 5 4 3 28 28 H 0.97003 * 120.00244 * 179.67755 * 7 6 5 29 29 H 1.08994 * 110.36742 * 37.06455 * 11 10 8 30 30 H 1.09008 * 110.36374 * 274.74316 * 11 10 8 31 31 H 1.09004 * 111.00291 * 278.93328 * 12 11 10 32 32 H 1.09005 * 111.00807 * 155.08431 * 12 11 10 33 33 H 0.96699 * 114.00083 * 182.43988 * 14 13 12 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 35 35 H 1.09004 * 110.06766 * 61.67566 * 23 10 8 36 36 H 1.08999 * 109.85130 * 300.41923 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0005 5 6 3.6078 -0.6061 0.0069 6 6 2.3566 -1.1352 0.0006 7 7 1.9890 -2.4942 0.0009 8 6 2.9397 -3.4494 0.0014 9 8 4.1150 -3.1375 0.0021 10 7 2.5877 -4.7504 0.0012 11 6 1.2070 -5.2670 0.0009 12 6 1.3147 -6.6862 -0.6105 13 6 2.6654 -7.1760 -0.0250 14 8 2.4860 -7.6956 1.2940 15 6 3.2918 -8.2115 -0.9231 16 1 2.7743 -8.5388 -1.8128 17 6 4.5281 -8.7368 -0.6121 18 7 5.1582 -8.3383 0.4713 19 14 5.3078 -10.0147 -1.7294 20 1 5.4936 -9.4390 -3.0857 21 1 6.6263 -10.4167 -1.1769 22 1 4.4233 -11.2046 -1.8136 23 6 3.5198 -5.8913 0.0059 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 4.5407 -1.1503 0.0132 28 1 1.0514 -2.7430 0.0006 29 1 0.5661 -4.6362 -0.6150 30 1 0.8220 -5.3209 1.0193 31 1 1.3543 -6.6408 -1.6989 32 1 0.4920 -7.3188 -0.2772 33 1 3.3062 -7.9809 1.7194 34 1 6.0278 -8.7082 0.6904 35 1 4.1290 -5.8727 0.9097 36 1 4.1596 -5.8503 -0.8756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672779371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = -10.699872 kcal Electronic energy + Delta-G solvation = -22250.811949 eV Core-core repulsion = 18738.733231 eV Total energy + Delta-G solvation = -3512.078718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.84342 -40.07437 -37.76225 -35.61409 -34.49020 -33.48672 -32.27615 -31.01753 -29.79288 -28.73520 -27.92026 -25.34847 -23.44136 -22.22202 -21.68469 -19.76658 -19.40601 -18.37935 -17.54604 -17.31789 -17.07813 -16.40132 -15.57114 -15.13671 -14.71390 -14.46008 -13.79969 -13.67162 -13.50205 -13.29338 -13.05272 -12.97941 -12.56592 -12.45694 -11.85512 -11.66218 -11.31725 -11.27103 -11.10635 -10.92934 -10.78985 -10.57628 -10.26821 -9.93753 -9.78268 -9.43862 -8.74564 -8.52578 -8.42917 -7.92387 -6.36159 -4.45108 1.55906 2.15652 2.49602 3.18637 3.24726 3.26293 3.49205 3.57578 3.97061 4.20831 4.26077 4.38983 4.90837 4.98510 5.19227 5.26437 5.32954 5.47160 5.52289 5.65346 5.79891 5.86183 5.91138 5.95686 6.36867 6.54167 6.57321 6.73131 6.76700 7.03002 7.18181 7.35333 7.65824 7.92284 8.15706 8.26926 8.57632 8.71787 9.22245 9.31809 10.71717 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.004081 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.539274 B = 6860.189082 C = 7352.409722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.004 4.004 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.075 4.075 6 C 0.055 3.945 7 N -0.653 5.653 8 C 0.716 3.284 9 O -0.581 6.581 10 N -0.621 5.621 11 C 0.098 3.902 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.585 6.585 15 C -0.540 4.540 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.120 3.880 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.409 0.591 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.385 0.615 34 H 0.272 0.728 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 10.297 -0.595 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.165 4.165 3 N -0.064 5.064 4 O 0.033 5.967 5 C -0.159 4.159 6 C -0.046 4.046 7 N -0.303 5.303 8 C 0.418 3.582 9 O -0.459 6.459 10 N -0.357 5.357 11 C -0.025 4.025 12 C -0.153 4.153 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.001 4.001 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.253 0.747 28 H 0.245 0.755 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.293 11.922 -0.613 14.536 hybrid contribution 0.583 -1.874 -0.425 2.008 sum -7.711 10.047 -1.038 12.708 Atomic orbital electron populations 1.20124 0.85849 1.03705 1.03359 1.23236 0.98737 0.87587 1.06931 1.73766 0.89815 1.23708 1.19105 1.84834 1.20601 1.23224 1.68047 1.26254 1.00999 0.81768 1.06904 1.18327 0.93056 0.84909 1.08319 1.41979 1.09826 1.01095 1.77424 1.15374 0.84208 0.79968 0.78618 1.90783 1.16337 1.80370 1.58458 1.48028 1.09520 1.03309 1.74827 1.22354 0.83071 0.96554 1.00493 1.22734 0.99659 0.93010 0.99932 1.19486 0.88923 0.88686 0.82086 1.86091 1.38336 1.84189 1.30827 1.21462 1.03409 1.23335 1.09652 0.91480 1.25072 0.96523 0.96280 0.95300 1.69626 1.15749 1.43112 1.24830 0.86438 0.78366 0.81348 0.80645 1.19983 1.21014 1.19957 1.23097 0.91922 0.82910 1.02173 0.90145 0.90214 0.90476 0.74743 0.75518 0.92425 0.91482 0.90352 0.90283 0.76379 0.91782 0.91470 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.48 36.01 0.38 -0.25 16 2 C 0.00 -0.05 7.34 -81.94 -0.60 -0.65 16 3 N -0.36 -5.12 12.06 33.56 0.40 -4.72 16 4 O 0.10 1.40 11.20 16.52 0.19 1.58 16 5 C -0.07 -1.11 11.17 29.88 0.33 -0.78 16 6 C 0.05 0.79 7.16 -83.24 -0.60 0.20 16 7 N -0.65 -9.46 5.43 -13.99 -0.08 -9.53 16 8 C 0.72 13.34 8.46 -86.92 -0.74 12.60 16 9 O -0.58 -12.46 14.07 5.28 0.07 -12.39 16 10 N -0.62 -11.79 3.33 -176.00 -0.59 -12.38 16 11 C 0.10 1.54 6.57 -2.53 -0.02 1.52 16 12 C -0.12 -2.10 6.23 -24.59 -0.15 -2.26 16 13 C 0.25 5.66 0.85 -89.94 -0.08 5.59 16 14 O -0.58 -13.96 13.08 -35.23 -0.46 -14.42 16 15 C -0.54 -13.49 8.11 -34.44 -0.28 -13.77 16 16 H 0.07 1.64 7.77 -52.49 -0.41 1.23 16 17 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 18 N -0.89 -22.95 10.96 55.43 0.61 -22.34 16 19 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 C 0.12 2.74 5.39 -2.90 -0.02 2.72 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.24 3.60 6.14 -52.48 -0.32 3.28 16 28 H 0.41 4.65 7.26 -40.82 -0.30 4.36 16 29 H 0.06 0.69 7.30 -51.93 -0.38 0.31 16 30 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.39 9.51 7.24 45.56 0.33 9.84 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.07 1.68 8.00 -51.93 -0.42 1.26 16 36 H 0.07 1.71 7.81 -51.93 -0.41 1.30 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -28.51 306.56 -5.67 -34.18 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -3.56 Total: 13.98 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.86 Total: 6.64 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.35 Total: -48.97 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.20 Total: -25.23 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.51 -5.67 -34.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672779371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.479 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds