Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30170 * 126.80728 * 2 1 4 4 O 1.20894 * 111.74054 * 179.97438 * 3 2 1 5 5 C 1.34289 * 111.63094 * 359.72578 * 4 3 2 6 6 C 1.35853 * 106.35591 * 0.43870 * 5 4 3 7 7 N 1.40779 * 128.05884 * 179.86033 * 6 5 4 8 8 C 1.34770 * 119.99807 * 359.67370 * 7 6 5 9 9 O 1.21597 * 120.00319 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99924 * 180.02562 * 8 7 6 11 11 C 1.47419 * 125.64850 * 359.97438 * 10 8 7 12 12 C 1.54905 * 104.83258 * 155.91019 * 11 10 8 13 13 C 1.55153 * 101.58432 * 37.00633 * 12 11 10 14 14 O 1.42899 * 110.72123 * 83.04292 * 13 12 11 15 15 C 1.50702 * 110.72079 * 206.13591 * 13 12 11 16 16 H 1.08002 * 120.00299 * 357.56389 * 15 13 12 17 17 C 1.37884 * 119.99942 * 177.27948 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47319 * 125.61416 * 180.20438 * 10 8 7 24 24 H 1.09000 * 109.46878 * 270.00718 * 1 2 3 25 25 H 1.09005 * 109.46707 * 30.00077 * 1 2 3 26 26 H 1.08994 * 109.47089 * 149.99881 * 1 2 3 27 27 H 1.08004 * 126.82368 * 180.29929 * 5 4 3 28 28 H 0.97003 * 120.00244 * 179.67755 * 7 6 5 29 29 H 1.08994 * 110.36742 * 37.06455 * 11 10 8 30 30 H 1.09008 * 110.36374 * 274.74316 * 11 10 8 31 31 H 1.09004 * 111.00291 * 278.93328 * 12 11 10 32 32 H 1.09005 * 111.00807 * 155.08431 * 12 11 10 33 33 H 0.96699 * 114.00083 * 182.43988 * 14 13 12 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 35 35 H 1.09004 * 110.06766 * 61.67566 * 23 10 8 36 36 H 1.08999 * 109.85130 * 300.41923 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0005 5 6 3.6078 -0.6061 0.0069 6 6 2.3566 -1.1352 0.0006 7 7 1.9890 -2.4942 0.0009 8 6 2.9397 -3.4494 0.0014 9 8 4.1150 -3.1375 0.0021 10 7 2.5877 -4.7504 0.0012 11 6 1.2070 -5.2670 0.0009 12 6 1.3147 -6.6862 -0.6105 13 6 2.6654 -7.1760 -0.0250 14 8 2.4860 -7.6956 1.2940 15 6 3.2918 -8.2115 -0.9231 16 1 2.7743 -8.5388 -1.8128 17 6 4.5281 -8.7368 -0.6121 18 7 5.1582 -8.3383 0.4713 19 14 5.3078 -10.0147 -1.7294 20 1 5.4936 -9.4390 -3.0857 21 1 6.6263 -10.4167 -1.1769 22 1 4.4233 -11.2046 -1.8136 23 6 3.5198 -5.8913 0.0059 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 4.5407 -1.1503 0.0132 28 1 1.0514 -2.7430 0.0006 29 1 0.5661 -4.6362 -0.6150 30 1 0.8220 -5.3209 1.0193 31 1 1.3543 -6.6408 -1.6989 32 1 0.4920 -7.3188 -0.2772 33 1 3.3062 -7.9809 1.7194 34 1 6.0278 -8.7082 0.6904 35 1 4.1290 -5.8727 0.9097 36 1 4.1596 -5.8503 -0.8756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672779371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = -31.659943 kcal Electronic energy + Delta-G solvation = -22251.720846 eV Core-core repulsion = 18738.733231 eV Total energy + Delta-G solvation = -3512.987615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.92521 -41.53583 -39.35622 -36.86198 -36.17841 -34.61495 -34.19491 -32.35356 -31.18079 -29.64544 -29.48884 -27.12024 -24.88790 -23.52504 -22.76061 -21.46459 -20.77774 -19.64076 -19.06799 -18.63559 -18.48316 -17.65408 -17.14102 -16.83832 -16.21466 -16.12520 -15.10575 -14.92309 -14.77846 -14.68089 -14.24881 -14.14028 -13.94666 -13.51009 -13.43281 -13.37575 -12.83254 -12.63939 -12.55223 -12.32191 -12.31386 -12.30593 -12.08928 -11.46712 -11.18446 -10.81906 -10.63896 -10.30711 -9.91607 -9.29737 -8.26557 -6.41929 0.42449 1.05000 1.15708 1.44272 1.45331 1.52530 2.07416 2.35640 2.40549 2.77772 3.00738 3.19430 3.41771 3.78102 3.93076 4.08265 4.17160 4.34845 4.45555 4.57819 4.66396 4.69606 4.71146 4.82826 5.02927 5.10760 5.12620 5.17356 5.34334 5.36328 5.47824 5.75287 5.87028 6.07124 6.63838 6.79997 7.16235 7.28163 7.29235 7.37115 8.79296 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.004081 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.539274 B = 6860.189082 C = 7352.409722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 N -0.375 5.375 4 O 0.088 5.912 5 C -0.081 4.081 6 C 0.039 3.961 7 N -0.631 5.631 8 C 0.713 3.287 9 O -0.618 6.618 10 N -0.625 5.625 11 C 0.101 3.899 12 C -0.110 4.110 13 C 0.233 3.767 14 O -0.587 6.587 15 C -0.559 4.559 16 H 0.068 0.932 17 C 0.028 3.972 18 N -0.915 5.915 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.140 3.860 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.226 0.774 28 H 0.427 0.573 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.377 0.623 34 H 0.271 0.729 35 H 0.033 0.967 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 10.831 -1.250 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 N -0.084 5.084 4 O 0.027 5.973 5 C -0.166 4.166 6 C -0.061 4.061 7 N -0.282 5.282 8 C 0.415 3.585 9 O -0.499 6.499 10 N -0.360 5.360 11 C -0.020 4.020 12 C -0.148 4.148 13 C 0.192 3.808 14 O -0.396 6.396 15 C -0.597 4.597 16 H 0.086 0.914 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.786 3.214 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.193 1.193 23 C 0.016 3.984 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.242 0.758 28 H 0.267 0.733 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.960 12.480 -1.274 16.658 hybrid contribution 1.382 -1.988 -0.213 2.431 sum -9.578 10.492 -1.487 14.284 Atomic orbital electron populations 1.20398 0.82523 1.05413 1.04987 1.23835 1.00499 0.86043 1.04264 1.73770 0.89856 1.24427 1.20315 1.84833 1.21024 1.22729 1.68698 1.26182 1.01240 0.82275 1.06854 1.18505 0.93404 0.85111 1.09093 1.41566 1.09920 1.00318 1.76411 1.15492 0.84329 0.80287 0.78401 1.90771 1.18260 1.81022 1.59804 1.47898 1.10268 1.02766 1.75100 1.22552 0.81703 0.95728 1.02016 1.22729 0.97215 0.94610 1.00272 1.19712 0.91681 0.87993 0.81405 1.86082 1.37791 1.84267 1.31429 1.21836 1.03793 1.23971 1.10114 0.91359 1.25772 0.97109 0.97964 0.96435 1.69732 1.15813 1.43941 1.25986 0.85565 0.77474 0.79381 0.78974 1.19836 1.21114 1.19340 1.22541 0.92032 0.84934 0.98874 0.88401 0.89142 0.88186 0.75812 0.73307 0.87463 0.90406 0.89660 0.88912 0.77322 0.92011 0.94866 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.48 71.24 0.75 -0.24 16 2 C 0.02 0.36 7.34 43.68 0.32 0.68 16 3 N -0.37 -10.16 12.06 -48.98 -0.59 -10.75 16 4 O 0.09 2.49 11.20 69.29 0.78 3.27 16 5 C -0.08 -2.40 11.17 67.27 0.75 -1.65 16 6 C 0.04 1.07 7.16 38.03 0.27 1.34 16 7 N -0.63 -16.69 5.43 -316.43 -1.72 -18.41 16 8 C 0.71 25.94 8.46 179.05 1.52 27.45 16 9 O -0.62 -27.02 14.07 -4.02 -0.06 -27.08 16 10 N -0.62 -23.09 3.33 -829.00 -2.76 -25.86 16 11 C 0.10 2.84 6.57 86.85 0.57 3.41 16 12 C -0.11 -3.77 6.23 31.98 0.20 -3.57 16 13 C 0.23 10.57 0.85 -10.35 -0.01 10.56 16 14 O -0.59 -28.17 13.08 -148.98 -1.95 -30.12 16 15 C -0.56 -28.03 8.11 25.60 0.21 -27.82 16 16 H 0.07 3.32 7.77 -2.91 -0.02 3.29 16 17 C 0.03 1.43 5.27 84.66 0.45 1.88 16 18 N -0.92 -48.26 10.96 21.45 0.24 -48.03 16 19 Si 0.96 40.81 29.54 68.60 2.03 42.84 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 C 0.14 6.51 5.39 86.67 0.47 6.97 16 24 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 27 H 0.23 7.16 6.14 -2.91 -0.02 7.15 16 28 H 0.43 7.91 7.26 -92.71 -0.67 7.24 16 29 H 0.11 1.99 7.30 -2.39 -0.02 1.97 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.08 2.78 8.03 -2.38 -0.02 2.76 16 32 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.38 19.16 7.24 -74.06 -0.54 18.62 16 34 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 35 H 0.03 1.74 8.00 -2.39 -0.02 1.72 16 36 H 0.04 1.89 7.81 -2.39 -0.02 1.87 16 Total: -1.00 -63.57 306.56 1.38 -62.19 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.07 Total: 32.93 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.49 Total: 19.01 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -4.84 Total: -103.04 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.23 Total: -53.93 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -63.57 1.38 -62.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672779371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds