Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 N 1.30800 * 127.02120 * 90.02966 * 15 14 13 17 17 O 1.21593 * 111.70834 * 179.97438 * 16 15 14 18 18 C 1.32781 * 111.22535 * 359.92590 * 17 16 15 19 19 C 1.35848 * 106.52666 * 359.89659 * 18 17 16 20 20 C 1.50054 * 123.78661 * 179.42965 * 19 18 17 21 21 O 1.43614 * 107.87689 * 345.78871 * 20 19 18 22 22 C 1.42998 * 114.40374 * 49.86675 * 21 20 19 23 23 C 1.50634 * 130.95752 * 180.22931 * 18 17 16 24 24 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 26 26 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 27 27 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.08999 * 109.93778 * 226.08919 * 20 19 18 32 32 H 1.09010 * 109.64109 * 105.31091 * 20 19 18 33 33 H 1.08993 * 109.40312 * 169.40728 * 22 21 20 34 34 H 1.09003 * 109.32957 * 49.61153 * 22 21 20 35 35 H 1.09000 * 109.82455 * 283.64335 * 23 18 17 36 36 H 1.09002 * 109.82363 * 44.57430 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 7 3.9261 -8.7362 1.0327 17 8 4.8378 -9.4722 0.7076 18 6 4.9423 -9.5534 -0.6135 19 6 3.9635 -8.7642 -1.1279 20 6 3.7391 -8.5643 -2.5981 21 8 4.8987 -9.0516 -3.2913 22 6 5.3112 -10.3644 -2.9025 23 6 5.8974 -10.3290 -1.4826 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4356 0.0009 28 1 3.5831 -5.7306 0.0012 29 1 1.5361 -7.4641 0.8857 30 1 1.5347 -7.4565 -0.8942 31 1 3.5993 -7.5047 -2.8120 32 1 2.8583 -9.1237 -2.9137 33 1 6.0682 -10.7268 -3.5978 34 1 4.4510 -11.0336 -2.9224 35 1 6.8691 -9.8354 -1.4961 36 1 6.0031 -11.3446 -1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680659607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = -12.407880 kcal Electronic energy + Delta-G solvation = -21294.028311 eV Core-core repulsion = 17781.875528 eV Total energy + Delta-G solvation = -3512.152783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.34934 -39.32995 -39.18304 -35.82229 -34.13279 -33.58453 -33.21213 -32.22164 -30.97747 -28.08569 -26.81869 -26.13182 -24.42783 -22.61720 -21.75609 -20.39879 -20.20032 -18.29623 -18.04874 -17.74220 -16.66086 -16.19902 -15.99090 -15.69019 -15.24412 -15.02130 -14.63039 -14.30449 -14.11054 -13.74488 -13.34826 -13.26170 -13.04562 -12.76499 -12.12735 -11.95908 -11.81811 -11.59868 -11.41956 -10.92252 -10.89781 -10.64493 -10.30390 -10.27397 -9.46111 -9.44212 -9.34402 -8.87647 -8.69993 -7.78107 -6.14521 -4.20930 1.04768 1.69101 2.56400 3.23812 3.25207 3.31387 3.34501 3.42969 3.81687 3.89697 4.04470 4.26593 4.34324 4.44079 4.51902 4.65074 4.92754 4.95859 5.04949 5.10484 5.17650 5.21765 5.28504 5.40703 5.55182 5.62048 5.73851 6.55782 6.68400 7.07575 7.49732 7.54673 7.57525 7.88140 7.88905 8.03561 8.76309 8.91316 9.29999 9.47524 10.95801 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003060 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.859958 B = 9148.082168 C = 9414.193971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.727 5.727 11 C 0.696 3.304 12 O -0.599 6.599 13 N -0.753 5.753 14 C 0.222 3.778 15 C 0.029 3.971 16 N -0.350 5.350 17 O 0.117 5.883 18 C -0.030 4.030 19 C -0.236 4.236 20 C 0.138 3.862 21 O -0.373 6.373 22 C 0.062 3.938 23 C -0.070 4.070 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.387 0.613 28 H 0.393 0.607 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -22.784 -5.421 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.478 6.478 13 N -0.412 5.412 14 C 0.097 3.903 15 C -0.129 4.129 16 N -0.054 5.054 17 O 0.051 5.949 18 C -0.095 4.095 19 C -0.241 4.241 20 C 0.061 3.939 21 O -0.291 6.291 22 C -0.015 4.015 23 C -0.108 4.108 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.219 0.781 28 H 0.226 0.774 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.752 -22.572 -4.224 25.796 hybrid contribution 1.127 0.961 -0.348 1.521 sum 12.879 -21.611 -4.572 25.570 Atomic orbital electron populations 1.69993 1.06080 1.27159 1.49054 1.24948 0.94923 0.99415 0.94768 0.86351 0.79808 0.82952 0.77726 1.19667 1.20794 1.20821 1.21265 0.93320 0.90411 1.52985 0.91889 1.19013 0.87754 0.80993 0.97698 1.45720 1.10904 1.04253 1.76982 1.16063 0.85001 0.80956 0.78408 1.90886 1.14053 1.84157 1.58658 1.45058 1.09147 1.04190 1.82849 1.19163 0.89427 0.77727 1.04010 1.22979 1.00415 1.01314 0.88215 1.74457 1.00584 1.07105 1.23246 1.84717 1.39414 1.49003 1.21721 1.24014 1.00041 1.01285 0.84182 1.21414 1.00016 1.03553 0.99078 1.20963 0.88176 1.01562 0.83204 1.88137 1.46669 1.32016 1.62272 1.22733 1.00063 0.85139 0.93602 1.21024 0.97060 1.00191 0.92546 0.92514 0.95613 0.95662 0.78086 0.77381 0.89883 0.89434 0.86555 0.90641 0.86960 0.92092 0.87805 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.81 5.55 -66.41 -0.37 -16.18 16 11 C 0.70 14.55 8.57 -86.92 -0.74 13.81 16 12 O -0.60 -14.97 16.34 5.28 0.09 -14.88 16 13 N -0.75 -11.79 5.55 -66.41 -0.37 -12.16 16 14 C 0.22 3.08 6.26 -5.19 -0.03 3.05 16 15 C 0.03 0.35 6.69 -82.46 -0.55 -0.20 16 16 N -0.35 -4.67 12.11 33.44 0.40 -4.26 16 17 O 0.12 1.33 11.19 20.12 0.23 1.56 16 18 C -0.03 -0.28 7.51 -35.20 -0.26 -0.54 16 19 C -0.24 -2.44 6.17 -105.22 -0.65 -3.09 16 20 C 0.14 1.22 7.26 35.69 0.26 1.48 16 21 O -0.37 -3.25 10.76 -35.23 -0.38 -3.63 16 22 C 0.06 0.32 6.77 37.50 0.25 0.57 16 23 C -0.07 -0.36 6.56 -27.58 -0.18 -0.54 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 28 H 0.39 5.32 8.48 -40.82 -0.35 4.98 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -34.61 315.69 -6.73 -41.34 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.45 Total: 4.82 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -2.35 Total: 8.18 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.40 Total: -58.18 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.07 Total: -16.95 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.61 -6.73 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.934 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds