Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 N 1.30800 * 127.02120 * 90.02966 * 15 14 13 17 17 O 1.21593 * 111.70834 * 179.97438 * 16 15 14 18 18 C 1.32781 * 111.22535 * 359.92590 * 17 16 15 19 19 C 1.35848 * 106.52666 * 359.89659 * 18 17 16 20 20 C 1.50054 * 123.78661 * 179.42965 * 19 18 17 21 21 O 1.43614 * 107.87689 * 345.78871 * 20 19 18 22 22 C 1.42998 * 114.40374 * 49.86675 * 21 20 19 23 23 C 1.50634 * 130.95752 * 180.22931 * 18 17 16 24 24 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 26 26 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 27 27 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.08999 * 109.93778 * 226.08919 * 20 19 18 32 32 H 1.09010 * 109.64109 * 105.31091 * 20 19 18 33 33 H 1.08993 * 109.40312 * 169.40728 * 22 21 20 34 34 H 1.09003 * 109.32957 * 49.61153 * 22 21 20 35 35 H 1.09000 * 109.82455 * 283.64335 * 23 18 17 36 36 H 1.09002 * 109.82363 * 44.57430 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 7 3.9261 -8.7362 1.0327 17 8 4.8378 -9.4722 0.7076 18 6 4.9423 -9.5534 -0.6135 19 6 3.9635 -8.7642 -1.1279 20 6 3.7391 -8.5643 -2.5981 21 8 4.8987 -9.0516 -3.2913 22 6 5.3112 -10.3644 -2.9025 23 6 5.8974 -10.3290 -1.4826 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4356 0.0009 28 1 3.5831 -5.7306 0.0012 29 1 1.5361 -7.4641 0.8857 30 1 1.5347 -7.4565 -0.8942 31 1 3.5993 -7.5047 -2.8120 32 1 2.8583 -9.1237 -2.9137 33 1 6.0682 -10.7268 -3.5978 34 1 4.4510 -11.0336 -2.9224 35 1 6.8691 -9.8354 -1.4961 36 1 6.0031 -11.3446 -1.1009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680659607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = -39.749287 kcal Electronic energy + Delta-G solvation = -21295.213923 eV Core-core repulsion = 17781.875528 eV Total energy + Delta-G solvation = -3513.338395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.23512 -40.95492 -39.85188 -37.07316 -36.07536 -34.67782 -34.23826 -34.02618 -31.63676 -29.78657 -28.06477 -27.25268 -24.96264 -24.60454 -22.69149 -21.98391 -21.16272 -19.90548 -18.95416 -18.66873 -18.04700 -17.43079 -17.19550 -16.78660 -16.53330 -16.46293 -15.84002 -15.53623 -15.06993 -14.94787 -14.64554 -14.49992 -14.07771 -13.93471 -13.81232 -13.61783 -12.88255 -12.76196 -12.73737 -12.40081 -12.22467 -12.00330 -11.61186 -11.45064 -11.19558 -10.86524 -10.82263 -10.41587 -10.19749 -9.67760 -8.28684 -6.44896 0.24524 0.75681 1.43818 1.45138 1.58419 1.84658 1.95489 2.15669 2.39628 2.68439 2.87561 3.06455 3.34145 3.47862 3.59397 3.77820 3.93699 4.19131 4.25359 4.36336 4.44788 4.49375 4.61981 4.67693 4.83420 4.91260 5.02151 5.05841 5.26940 5.28233 5.47224 5.62336 5.83910 6.04027 6.13539 6.66437 7.03783 7.18371 7.25336 7.62669 8.83883 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003060 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.859958 B = 9148.082168 C = 9414.193971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.698 3.302 12 O -0.642 6.642 13 N -0.730 5.730 14 C 0.224 3.776 15 C 0.020 3.980 16 N -0.379 5.379 17 O 0.118 5.882 18 C -0.020 4.020 19 C -0.245 4.245 20 C 0.139 3.861 21 O -0.390 6.390 22 C 0.054 3.946 23 C -0.067 4.067 24 H 0.269 0.731 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.404 0.596 28 H 0.407 0.593 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.051 -23.560 -6.243 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.100 0.900 9 C 0.162 3.838 10 N -0.374 5.374 11 C 0.397 3.603 12 O -0.524 6.524 13 N -0.388 5.388 14 C 0.099 3.901 15 C -0.137 4.137 16 N -0.084 5.084 17 O 0.051 5.949 18 C -0.085 4.085 19 C -0.250 4.250 20 C 0.062 3.938 21 O -0.309 6.309 22 C -0.022 4.022 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.008 0.992 26 H 0.004 0.996 27 H 0.239 0.761 28 H 0.243 0.757 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.713 -23.402 -5.046 28.100 hybrid contribution 0.264 1.038 -0.111 1.077 sum 14.977 -22.364 -5.157 27.405 Atomic orbital electron populations 1.70147 1.08216 1.28528 1.49956 1.26053 0.95799 1.03820 0.93868 0.85091 0.78989 0.77284 0.77709 1.17792 1.20290 1.20502 1.21624 0.94286 0.90498 1.52885 0.89952 1.18456 0.88038 0.83116 0.94212 1.45312 1.11007 1.03702 1.77413 1.16136 0.84858 0.81383 0.77896 1.90856 1.16290 1.84821 1.60434 1.44780 1.09143 1.03898 1.80979 1.19158 0.90324 0.76764 1.03805 1.22736 1.00266 1.01545 0.89161 1.74440 1.01596 1.08228 1.24116 1.84682 1.38713 1.48490 1.22973 1.24788 0.99906 1.00452 0.83366 1.21582 1.00235 1.03825 0.99366 1.20958 0.89010 1.01533 0.82276 1.88117 1.46461 1.33881 1.62422 1.23060 1.01245 0.83754 0.94138 1.21313 0.96349 1.01335 0.91499 0.92201 0.99168 0.99555 0.76063 0.75728 0.91240 0.88570 0.87359 0.89418 0.84201 0.91247 0.86479 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 42.72 29.54 68.60 2.03 44.75 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.56 -30.62 9.28 25.60 0.24 -30.38 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.28 15.98 5.43 85.63 0.46 16.45 16 10 N -0.72 -31.84 5.55 -482.28 -2.68 -34.52 16 11 C 0.70 29.76 8.57 179.05 1.53 31.29 16 12 O -0.64 -33.31 16.34 -4.01 -0.07 -33.37 16 13 N -0.73 -22.79 5.55 -482.30 -2.68 -25.46 16 14 C 0.22 6.27 6.26 85.63 0.54 6.81 16 15 C 0.02 0.48 6.69 43.08 0.29 0.76 16 16 N -0.38 -9.91 12.11 -48.64 -0.59 -10.50 16 17 O 0.12 2.51 11.19 81.96 0.92 3.42 16 18 C -0.02 -0.32 7.51 25.11 0.19 -0.13 16 19 C -0.25 -4.73 6.17 -20.25 -0.13 -4.86 16 20 C 0.14 2.27 7.26 71.03 0.52 2.78 16 21 O -0.39 -5.92 10.76 -148.98 -1.60 -7.53 16 22 C 0.05 0.38 6.77 72.20 0.49 0.87 16 23 C -0.07 -0.45 6.56 30.05 0.20 -0.26 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 27 H 0.40 14.91 8.34 -92.71 -0.77 14.14 16 28 H 0.41 10.66 8.48 -92.71 -0.79 9.87 16 29 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.07 0.39 8.09 -2.39 -0.02 0.37 16 35 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -77.07 315.69 -0.02 -77.09 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.42 Total: 18.27 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 4.79 Total: 24.04 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.66 Total: -126.67 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.75 Total: -37.48 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.07 -0.02 -77.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.344 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds