Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.52994 * 109.47118 * 179.97438 * 17 16 14 19 19 C 1.50708 * 109.47076 * 179.97438 * 18 17 16 20 20 C 1.33387 * 125.19884 * 89.99904 * 19 18 17 21 21 C 1.38420 * 114.91896 * 179.97438 * 20 19 18 22 22 C 1.33386 * 114.92695 * 0.02562 * 21 20 19 23 23 S 1.75883 * 125.20438 * 269.69595 * 19 18 17 24 24 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 28 28 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 29 29 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 31 31 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 32 32 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 33 33 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 34 34 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 35 35 H 1.08998 * 109.46965 * 299.99512 * 18 17 16 36 36 H 1.09003 * 109.47184 * 60.00331 * 18 17 16 37 37 H 1.08000 * 122.53966 * 359.95965 * 20 19 18 38 38 H 1.08003 * 122.54207 * 180.02562 * 21 20 19 39 39 H 1.07994 * 125.21197 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7939 4.5634 -3.8341 19 6 -3.1939 5.1061 -3.7045 20 6 -3.5078 6.3283 -3.2724 21 6 -4.8637 6.6047 -3.2388 22 6 -5.6510 5.6067 -3.6430 23 16 -4.6633 4.2272 -4.1070 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.8771 0.4810 2.1123 30 1 2.2719 2.1232 -1.9977 31 1 0.7225 4.1501 -2.8716 32 1 0.0680 2.6061 -3.4682 33 1 -2.0754 3.0670 -2.3098 34 1 -1.4210 4.6110 -1.7131 35 1 -1.1055 5.3807 -4.0486 36 1 -1.7600 3.8370 -4.6460 37 1 -2.7607 7.0477 -2.9714 38 1 -5.2547 7.5563 -2.9101 39 1 -6.7296 5.6421 -3.6842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -22.758250 kcal Electronic energy + Delta-G solvation = -19303.593568 eV Core-core repulsion = 16337.285174 eV Total energy + Delta-G solvation = -2966.308394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29287 -38.12866 -35.59970 -34.49318 -32.37756 -31.62466 -30.27807 -27.69793 -26.56048 -23.79286 -22.65917 -21.84603 -20.39401 -19.52362 -19.39346 -17.55078 -16.93105 -15.88419 -15.82716 -15.58904 -15.34071 -14.47513 -14.08564 -13.68085 -13.40418 -13.23585 -12.86253 -12.80415 -12.58800 -12.29969 -12.01925 -11.90113 -11.66497 -11.50340 -11.34830 -11.06741 -10.91711 -10.87013 -10.64633 -10.58748 -9.91628 -9.54645 -9.21910 -9.05441 -8.77493 -8.74149 -8.63264 -8.02438 -6.20860 -4.23087 0.84232 1.47726 1.84764 2.59048 3.23526 3.31059 3.35764 3.41266 3.99701 4.32086 4.58963 4.87199 4.93045 5.09638 5.12751 5.17167 5.33719 5.40396 5.48998 5.62652 5.64858 5.81094 5.93117 5.98480 6.03868 6.12594 6.17361 6.20746 6.32520 6.38104 6.67241 6.71609 6.86929 6.97741 7.29394 7.33852 7.54413 8.17813 8.56653 8.76997 9.00631 9.40691 10.91277 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.003109 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.130389 B = 9004.143492 C = 9230.080736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.142 4.142 17 C -0.096 4.096 18 C -0.052 4.052 19 C -0.161 4.161 20 C -0.146 4.146 21 C -0.131 4.131 22 C -0.222 4.222 23 S 0.092 5.908 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 7.875 -12.560 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.183 4.183 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.278 4.278 20 C -0.176 4.176 21 C -0.162 4.162 22 C -0.357 4.357 23 S 0.355 5.645 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.220 6.354 -12.319 22.893 hybrid contribution 0.179 0.916 0.959 1.338 sum -18.041 7.270 -11.360 22.525 Atomic orbital electron populations 1.21871 0.96947 0.98942 1.02275 1.22282 0.94350 1.00042 1.01012 1.19122 0.95507 0.88470 0.83101 0.93418 1.21071 0.88714 1.39688 1.07781 0.90246 1.24843 0.94866 0.95168 0.97696 1.69875 1.08690 1.44596 1.29851 0.86896 0.80971 0.79948 0.80873 1.20258 1.22190 1.18472 1.46191 1.15069 1.56002 1.17859 1.20471 0.82416 0.79104 0.89437 1.90666 1.51549 1.59938 1.40923 1.21686 0.98234 1.01349 0.97010 1.21315 0.95167 1.00785 0.96196 1.20254 0.89540 1.00485 0.98851 1.24561 0.98813 0.97704 1.06765 1.20145 0.96534 0.96945 1.03998 1.20174 0.93018 1.00225 1.02785 1.25574 1.03302 0.97160 1.09711 1.84325 0.97318 1.17743 1.65100 0.95064 0.92923 0.92898 0.92368 0.92872 0.92309 0.77268 0.89210 0.89411 0.91062 0.90798 0.89797 0.90711 0.84275 0.84465 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.71 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.91 16 5 C -0.53 -14.41 9.31 -34.44 -0.32 -14.73 16 6 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 9 Si 0.88 21.88 24.41 -169.99 -4.15 17.73 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.24 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 13 N -0.70 -13.55 5.02 -54.93 -0.28 -13.83 16 14 C 0.50 8.94 6.40 -10.98 -0.07 8.87 16 15 O -0.55 -11.79 13.12 5.55 0.07 -11.72 16 16 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 17 C -0.10 -1.16 4.49 -26.74 -0.12 -1.28 16 18 C -0.05 -0.49 5.71 -27.88 -0.16 -0.65 16 19 C -0.16 -1.67 5.76 -36.00 -0.21 -1.88 16 20 C -0.15 -1.46 10.05 -41.21 -0.41 -1.88 16 21 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 22 C -0.22 -2.01 11.23 29.04 0.33 -1.68 16 23 S 0.09 0.91 23.33 -107.50 -2.51 -1.60 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 26 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 6.66 8.54 -40.82 -0.35 6.31 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -31.46 327.43 -8.55 -40.01 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.81 Total: 5.10 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.59 Total: -14.91 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.50 Total: -39.56 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.46 -8.55 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.250 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds