Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 H 1.09003 * 109.46920 * 305.00379 * 3 2 1 5 5 C 1.50694 * 109.47115 * 185.00082 * 3 2 1 6 6 H 1.08000 * 119.99932 * 240.00172 * 5 3 2 7 7 C 1.37871 * 120.00374 * 59.99667 * 5 3 2 8 8 N 1.31513 * 119.99902 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00397 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47195 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46972 * 120.00101 * 9 7 5 12 12 H 1.48497 * 109.47531 * 240.00714 * 9 7 5 13 13 N 1.46505 * 109.47039 * 65.00006 * 3 2 1 14 14 C 1.34780 * 119.99588 * 275.00069 * 13 3 2 15 15 O 1.21281 * 120.00434 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99575 * 180.02562 * 14 13 3 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.09002 * 109.47039 * 300.00298 * 1 2 3 25 25 H 1.09001 * 109.47021 * 59.99969 * 1 2 3 26 26 H 1.08994 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47039 * 239.99702 * 2 1 3 28 28 H 1.09001 * 109.47021 * 120.00031 * 2 1 3 29 29 H 0.97001 * 120.00634 * 179.97438 * 8 7 5 30 30 H 0.96992 * 119.99723 * 95.00079 * 13 3 2 31 31 H 1.08997 * 109.47561 * 59.99923 * 16 14 13 32 32 H 1.09000 * 109.46976 * 299.99617 * 16 14 13 33 33 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 34 34 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 35 35 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 36 36 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 37 37 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 38 38 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 39 39 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8811 -1.3817 10 1 6.5988 1.5462 -0.1942 11 1 6.4970 -0.5177 -1.4629 12 1 6.3990 1.6166 -2.6101 13 7 1.6525 2.0975 1.2519 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6327 0.4341 16 6 0.0367 3.3386 2.6545 17 6 -1.3826 3.8943 2.5212 18 6 -1.7874 4.5783 3.8285 19 6 -3.1852 5.1261 3.6970 20 6 -4.3025 4.4627 3.9981 21 6 -5.4742 5.1717 3.7963 22 6 -5.3082 6.4110 3.3319 23 16 -3.5924 6.7405 3.1303 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0605 -2.9502 30 1 2.2719 2.1231 1.9977 31 1 0.7280 4.1541 2.8667 32 1 0.0680 2.6146 3.4686 33 1 -2.0738 3.0785 2.3091 34 1 -1.4144 4.6183 1.7069 35 1 -1.0963 5.3940 4.0409 36 1 -1.7558 3.8539 4.6425 37 1 -4.2938 3.4491 4.3707 38 1 -6.4488 4.7533 4.0003 39 1 -6.1054 7.1071 3.1164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -30.861829 kcal Electronic energy + Delta-G solvation = -19213.866024 eV Core-core repulsion = 16247.206233 eV Total energy + Delta-G solvation = -2966.659792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.08016 -38.07121 -35.34452 -34.37631 -32.34543 -31.12705 -30.10862 -27.32933 -26.32088 -23.76795 -22.89847 -21.67329 -20.01440 -19.37227 -19.23917 -17.44356 -16.77898 -15.74620 -15.64907 -15.33849 -15.17880 -14.25643 -14.08530 -13.61196 -13.31711 -12.87759 -12.81403 -12.68810 -12.51559 -12.05052 -11.79652 -11.55774 -11.30656 -11.30252 -11.22286 -10.94333 -10.86993 -10.81679 -10.56740 -10.29460 -10.13912 -9.60828 -9.02675 -8.91658 -8.72102 -8.58939 -8.48373 -7.76744 -6.11278 -4.20548 0.88546 1.52111 1.89269 2.63036 3.23690 3.31635 3.34105 3.49073 4.13479 4.38881 4.65924 4.91448 4.98730 5.18736 5.21133 5.24041 5.40729 5.45885 5.55052 5.67799 5.72933 5.94374 5.97653 6.17437 6.23979 6.38255 6.41262 6.44522 6.48437 6.68719 7.06126 7.22648 7.40025 7.51098 7.64259 7.76502 7.93026 8.20550 8.72765 8.80721 9.21031 9.47474 10.94070 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.002945 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.204364 B = 9506.570053 C = 9815.597303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.550 6.550 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.052 4.052 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.131 4.131 22 C -0.223 4.223 23 S 0.094 5.906 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.021 0.979 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.263 0.737 30 H 0.387 0.613 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 8.907 13.784 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.429 6.429 16 C -0.183 4.183 17 C -0.134 4.134 18 C -0.091 4.091 19 C -0.278 4.278 20 C -0.177 4.177 21 C -0.162 4.162 22 C -0.358 4.358 23 S 0.357 5.643 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.984 10.035 12.412 19.959 hybrid contribution 0.397 -1.259 0.682 1.486 sum -11.587 8.776 13.095 19.564 Atomic orbital electron populations 1.21833 0.98368 0.97931 1.01245 1.21928 0.92599 0.99904 1.02172 1.18759 0.94104 0.89157 0.81243 0.93419 1.21283 0.90830 1.38804 1.06218 0.92099 1.24894 0.98570 0.94868 0.95428 1.69906 1.35004 1.37745 1.09325 0.86415 0.84956 0.77752 0.78097 1.19763 1.20898 1.20902 1.46511 1.14804 1.56156 1.18429 1.20395 0.82679 0.79363 0.89246 1.90668 1.51463 1.60000 1.40810 1.21697 0.98102 1.01143 0.97405 1.21310 0.95362 1.00771 0.95981 1.20260 0.89630 0.99994 0.99237 1.24571 0.99699 0.97143 1.06378 1.20136 0.91121 1.01587 1.04859 1.20167 0.99589 0.94166 1.02283 1.25573 0.99042 1.01393 1.09811 1.84334 1.00659 1.13853 1.65485 0.94255 0.93201 0.95958 0.88388 0.95127 0.92648 0.78064 0.89563 0.89604 0.90879 0.91019 0.90734 0.89904 0.84325 0.84497 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.05 8.73 -34.45 -0.30 -14.35 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 N -0.71 -14.47 5.02 -54.93 -0.28 -14.75 16 14 C 0.50 9.53 6.40 -10.98 -0.07 9.46 16 15 O -0.55 -12.64 13.12 5.56 0.07 -12.57 16 16 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 17 C -0.10 -1.24 4.49 -26.73 -0.12 -1.36 16 18 C -0.05 -0.52 5.71 -27.88 -0.16 -0.68 16 19 C -0.16 -1.75 5.76 -36.00 -0.21 -1.96 16 20 C -0.15 -1.53 10.05 -41.21 -0.41 -1.95 16 21 C -0.13 -1.26 10.18 -41.21 -0.42 -1.68 16 22 C -0.22 -2.11 11.23 29.04 0.33 -1.78 16 23 S 0.09 0.98 23.33 -107.50 -2.51 -1.53 16 24 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.07 1.05 8.10 -51.92 -0.42 0.63 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -30.41 334.19 -9.61 -40.02 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.94 Total: 6.49 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.60 Total: -14.10 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.93 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.41 -9.61 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.154 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds