Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 N 1.46505 * 109.46926 * 185.72468 * 3 2 1 5 5 C 1.36906 * 119.99582 * 278.65817 * 4 3 2 6 6 H 1.07995 * 119.99242 * 180.52692 * 5 4 3 7 7 C 1.39016 * 120.00179 * 0.52529 * 5 4 3 8 8 N 1.31379 * 120.00256 * 9.82676 * 7 5 4 9 9 Si 1.86804 * 120.00057 * 189.82471 * 7 5 4 10 10 H 1.48505 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46956 * 119.99878 * 9 7 5 12 12 H 1.48499 * 109.47225 * 240.00306 * 9 7 5 13 13 C 1.34770 * 119.99765 * 98.66133 * 4 3 2 14 14 O 1.21620 * 119.99372 * 186.38845 * 13 4 3 15 15 C 1.47490 * 120.00259 * 6.38864 * 13 4 3 16 16 C 1.39787 * 120.08645 * 314.97948 * 15 13 4 17 17 C 1.37718 * 119.94655 * 180.02562 * 16 15 13 18 18 C 1.38941 * 120.12117 * 0.02562 * 17 16 15 19 19 O 1.35765 * 119.91163 * 180.27873 * 18 17 16 20 20 C 1.42893 * 117.00333 * 359.72240 * 19 18 17 21 21 C 1.39186 * 120.17406 * 0.02562 * 18 17 16 22 22 F 1.35100 * 119.97222 * 180.02562 * 21 18 17 23 23 C 1.37877 * 120.05620 * 359.97438 * 21 18 17 24 24 H 1.08996 * 109.47006 * 59.99308 * 1 2 3 25 25 H 1.08990 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46880 * 299.99900 * 1 2 3 27 27 H 1.09001 * 109.46395 * 240.00467 * 2 1 3 28 28 H 1.08996 * 109.47006 * 120.00692 * 2 1 3 29 29 H 1.09001 * 109.46672 * 65.72686 * 3 2 1 30 30 H 1.09000 * 109.47251 * 305.72457 * 3 2 1 31 31 H 0.96996 * 120.00052 * 179.97438 * 8 7 5 32 32 H 1.07999 * 120.02693 * 0.03980 * 16 15 13 33 33 H 1.07998 * 119.93892 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47385 * 59.99991 * 20 19 18 35 35 H 1.08995 * 109.47992 * 180.02562 * 20 19 18 36 36 H 1.09004 * 109.47004 * 300.00308 * 20 19 18 37 37 H 1.07998 * 120.06444 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.4986 1.4447 -0.1378 5 6 4.2900 1.2284 0.9582 6 1 5.3652 1.2385 0.8582 7 6 3.7094 0.9958 2.1998 8 7 2.4149 0.7914 2.2918 9 14 4.7700 0.9738 3.7374 10 1 6.1850 1.2296 3.3665 11 1 4.3059 2.0286 4.6739 12 1 4.6621 -0.3537 4.3942 13 6 4.0612 1.6598 -1.3434 14 8 5.2642 1.5470 -1.4818 15 6 3.2180 2.0319 -2.4949 16 6 2.0232 1.3485 -2.7384 17 6 1.2384 1.6980 -3.8148 18 6 1.6322 2.7284 -4.6595 19 8 0.8524 3.0731 -5.7161 20 6 -0.3542 2.3306 -5.9015 21 6 2.8215 3.4115 -4.4224 22 9 3.2003 4.4131 -5.2461 23 6 3.6128 3.0676 -3.3469 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.7628 1.9258 0.9368 30 1 1.5955 1.9851 -0.8343 31 1 2.0099 0.6287 3.1580 32 1 1.7157 0.5472 -2.0829 33 1 0.3150 1.1701 -4.0025 34 1 -0.9878 2.4412 -5.0215 35 1 -0.8811 2.7064 -6.7785 36 1 -0.1140 1.2772 -6.0461 37 1 4.5358 3.5974 -3.1630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058617392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -63.772538 kcal Electronic energy + Delta-G solvation = -22522.651301 eV Core-core repulsion = 18988.351218 eV Total energy + Delta-G solvation = -3534.300083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.52797 -40.06024 -38.86950 -36.64938 -35.52014 -32.45690 -31.52553 -30.45377 -29.97977 -27.51944 -25.89467 -24.74233 -22.61606 -22.45795 -20.76127 -19.63535 -18.14302 -17.32636 -16.84661 -16.60662 -16.05553 -15.39015 -15.08078 -14.90989 -14.62780 -14.15995 -14.10459 -13.78449 -13.68988 -13.22334 -12.70730 -12.22201 -12.17717 -12.09247 -11.85460 -11.72896 -11.44198 -11.09480 -11.00756 -10.96531 -10.62734 -10.42080 -10.33135 -10.10107 -9.88022 -8.91628 -8.70786 -8.56260 -7.90681 -7.82053 -6.32026 -3.89318 1.28527 1.39502 3.07419 3.16737 3.20027 3.26988 3.51843 3.97566 4.14610 4.39967 4.73742 4.84028 5.00053 5.05701 5.11382 5.28433 5.35010 5.44372 5.51824 5.71746 5.90902 5.96121 6.07259 6.17383 6.24594 6.36117 6.42889 6.59256 6.69906 6.78970 6.83996 6.88775 7.30474 7.36519 7.52732 7.73533 7.97448 8.42541 9.06931 9.31517 9.86960 10.52991 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.005326 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.328665 B = 5256.412768 C = 6176.449929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.110 3.890 4 N -0.427 5.427 5 C -0.289 4.289 6 H 0.108 0.892 7 C 0.023 3.977 8 N -0.870 5.870 9 Si 0.932 3.068 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.470 3.530 14 O -0.591 6.591 15 C -0.096 4.096 16 C -0.078 4.078 17 C -0.189 4.189 18 C 0.091 3.909 19 O -0.313 6.313 20 C 0.027 3.973 21 C 0.060 3.940 22 F -0.137 7.137 23 C -0.080 4.080 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 0.706 -8.250 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.013 4.013 4 N -0.143 5.143 5 C -0.416 4.416 6 H 0.125 0.875 7 C -0.178 4.178 8 N -0.511 5.511 9 Si 0.759 3.241 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.259 3.741 14 O -0.477 6.477 15 C -0.100 4.100 16 C -0.097 4.097 17 C -0.208 4.208 18 C 0.045 3.955 19 O -0.226 6.226 20 C -0.068 4.068 21 C 0.040 3.960 22 F -0.116 7.116 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.564 0.798 -8.273 11.934 hybrid contribution 0.071 -0.107 0.634 0.647 sum -8.492 0.691 -7.639 11.443 Atomic orbital electron populations 1.21638 0.97364 1.00017 1.00698 1.22136 0.93763 0.98344 1.02167 1.22138 0.79689 0.97140 1.02346 1.43787 1.06306 1.58048 1.06143 1.19948 0.92375 1.44478 0.84845 0.87457 1.25317 0.96442 0.96684 0.99404 1.70108 1.09675 1.46666 1.24673 0.85743 0.80004 0.77820 0.80513 1.19227 1.20589 1.20698 1.17598 0.87466 0.86454 0.82574 1.90631 1.14680 1.58606 1.83827 1.20017 0.95653 0.96766 0.97520 1.21930 0.92507 0.99435 0.95807 1.21020 1.02639 0.99701 0.97394 1.19077 0.91138 0.95819 0.89462 1.86051 1.33729 1.58320 1.44519 1.23074 0.84761 0.96484 1.02486 1.16737 0.94361 0.91486 0.93418 1.91466 1.91100 1.58161 1.70836 1.20996 0.99471 0.97291 0.92214 0.94526 0.94067 0.92521 0.95258 0.87269 0.86389 0.94226 0.92267 0.82943 0.84578 0.92421 0.88303 0.92504 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.87 37.16 0.37 -1.83 16 2 C -0.13 -2.47 4.67 -26.73 -0.12 -2.60 16 3 C 0.11 2.35 4.16 -4.04 -0.02 2.34 16 4 N -0.43 -10.60 2.64 -116.01 -0.31 -10.91 16 5 C -0.29 -7.64 9.49 -15.00 -0.14 -7.79 16 6 H 0.11 3.02 7.19 -52.49 -0.38 2.64 16 7 C 0.02 0.56 5.33 -17.46 -0.09 0.46 16 8 N -0.87 -20.47 7.19 55.50 0.40 -20.07 16 9 Si 0.93 19.66 29.56 -169.99 -5.03 14.63 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.47 11.65 7.22 -12.49 -0.09 11.56 16 14 O -0.59 -16.65 16.58 5.26 0.09 -16.56 16 15 C -0.10 -1.95 5.13 -104.96 -0.54 -2.49 16 16 C -0.08 -1.36 7.37 -39.19 -0.29 -1.64 16 17 C -0.19 -2.76 9.01 -39.51 -0.36 -3.12 16 18 C 0.09 1.44 6.70 -38.97 -0.26 1.18 16 19 O -0.31 -4.42 10.35 -19.01 -0.20 -4.61 16 20 C 0.03 0.25 9.81 101.05 0.99 1.24 16 21 C 0.06 1.05 7.30 -39.36 -0.29 0.76 16 22 F -0.14 -2.39 17.10 2.25 0.04 -2.35 16 23 C -0.08 -1.51 9.66 -39.13 -0.38 -1.88 16 24 H 0.04 0.51 8.13 -51.93 -0.42 0.08 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.03 0.57 6.33 -51.93 -0.33 0.24 16 28 H 0.11 2.46 5.88 -51.93 -0.31 2.16 16 29 H 0.12 2.75 5.79 -51.93 -0.30 2.45 16 30 H 0.04 0.78 4.93 -51.93 -0.26 0.52 16 31 H 0.27 5.96 8.31 -40.82 -0.34 5.62 16 32 H 0.15 2.62 3.67 -52.49 -0.19 2.43 16 33 H 0.14 1.53 6.27 -52.49 -0.33 1.20 16 34 H 0.06 0.46 7.64 -51.93 -0.40 0.07 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 37 H 0.15 2.71 8.06 -52.49 -0.42 2.28 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -28.98 304.75 -5.76 -34.75 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.13 Total: 4.36 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.22 Total: -3.82 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.09 Total: -30.98 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.11 Total: -21.17 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.98 -5.76 -34.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058617392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.026 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds