Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21581 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.47600 * 119.99775 * 179.97438 * 14 13 3 17 17 C 1.39724 * 120.07966 * 359.72289 * 16 14 13 18 18 C 1.37742 * 119.94624 * 179.74716 * 17 16 14 19 19 C 1.38925 * 120.11935 * 0.52903 * 18 17 16 20 20 O 1.35764 * 119.92069 * 179.72523 * 19 18 17 21 21 C 1.42902 * 116.99870 * 0.02562 * 20 19 18 22 22 C 1.39171 * 120.16208 * 359.74599 * 19 18 17 23 23 F 1.35095 * 119.97669 * 179.97438 * 22 19 18 24 24 C 1.37899 * 120.04435 * 359.97438 * 22 19 18 25 25 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 26 26 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 28 28 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 29 29 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 30 30 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 31 31 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 32 32 H 1.07993 * 120.02785 * 359.97438 * 17 16 14 33 33 H 1.08003 * 119.94031 * 180.25464 * 18 17 16 34 34 H 1.09003 * 109.46812 * 300.00496 * 21 20 19 35 35 H 1.08996 * 109.47248 * 60.00047 * 21 20 19 36 36 H 1.08994 * 109.47170 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.05156 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3382 2.6316 0.4504 16 6 0.0621 3.3176 2.6460 17 6 0.9580 3.3476 3.7178 18 6 0.6004 3.9655 4.8958 19 6 -0.6536 4.5495 5.0239 20 8 -1.0039 5.1526 6.1887 21 6 -0.0341 5.1492 7.2383 22 6 -1.5518 4.5175 3.9614 23 9 -2.7704 5.0861 4.0902 24 6 -1.1987 3.9057 2.7770 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9924 1.1426 -0.6139 31 1 2.2853 2.1184 1.9978 32 1 1.9313 2.8898 3.6215 33 1 1.2945 3.9921 5.7228 34 1 0.2110 4.1206 7.5031 35 1 0.8668 5.6624 6.9022 36 1 -0.4406 5.6615 8.1102 37 1 -1.8955 3.8811 1.9522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061669030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -97.604159 kcal Electronic energy + Delta-G solvation = -21807.804935 eV Core-core repulsion = 18272.037803 eV Total energy + Delta-G solvation = -3535.767132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.88808 -40.42396 -39.31744 -37.22474 -35.31322 -32.60321 -31.77963 -30.90098 -30.22542 -27.91686 -27.03762 -23.71528 -22.88549 -22.29399 -20.79070 -19.68257 -18.78741 -18.10867 -17.09966 -17.06450 -16.41810 -15.89337 -15.47253 -15.25990 -14.96736 -14.81313 -14.46305 -14.05207 -13.42242 -13.07597 -12.83721 -12.77858 -12.58943 -12.39970 -12.27785 -12.08243 -11.86930 -11.37458 -11.27923 -10.95627 -10.73353 -10.49411 -9.84135 -9.74411 -9.37487 -9.17537 -8.93404 -8.55562 -8.45783 -8.12558 -6.59610 -4.27806 0.70963 0.94526 2.79674 2.92878 3.34180 3.44066 3.57583 3.72362 3.87909 4.05854 4.38284 4.42055 4.67188 4.79504 4.86543 4.96953 5.01302 5.12276 5.16226 5.32622 5.63426 5.77121 5.92383 6.00166 6.04440 6.10168 6.21168 6.35606 6.66037 6.72606 6.85942 6.94551 6.98253 7.29390 7.30476 7.58237 8.18048 8.37443 8.63916 8.87800 9.42786 10.81105 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.004124 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.381979 B = 6787.883907 C = 7389.927991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.611 4.611 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.903 5.903 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.693 5.693 14 C 0.546 3.454 15 O -0.543 6.543 16 C -0.132 4.132 17 C -0.056 4.056 18 C -0.190 4.190 19 C 0.111 3.889 20 O -0.309 6.309 21 C 0.025 3.975 22 C 0.060 3.940 23 F -0.131 7.131 24 C -0.060 4.060 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 5.894 15.428 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.876 3.124 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.341 5.341 14 C 0.332 3.668 15 O -0.423 6.423 16 C -0.136 4.136 17 C -0.075 4.075 18 C -0.208 4.208 19 C 0.064 3.936 20 O -0.221 6.221 21 C -0.070 4.070 22 C 0.040 3.960 23 F -0.110 7.110 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.277 5.335 13.275 17.615 hybrid contribution 0.458 0.665 2.218 2.360 sum -9.820 6.000 15.492 19.299 Atomic orbital electron populations 1.21906 0.97100 0.99103 1.02228 1.22254 0.94075 0.99770 1.01454 1.19300 0.95994 0.88604 0.82338 0.93123 1.22152 0.89615 1.48310 1.04854 0.91999 1.25696 0.97477 0.93517 1.00206 1.70841 1.04424 1.42394 1.36040 0.83957 0.75368 0.77236 0.75809 1.20650 1.19786 1.21358 1.46190 1.14235 1.55464 1.18208 1.17960 0.82969 0.79242 0.86626 1.90754 1.51112 1.60116 1.40318 1.20001 0.94728 1.03096 0.95736 1.21268 0.99223 0.95592 0.91371 1.21059 0.95626 1.03880 1.00276 1.19208 0.93366 0.94875 0.86123 1.86097 1.42677 1.72703 1.20664 1.23161 0.92532 1.02433 0.88903 1.16768 0.81914 1.03563 0.93745 1.91505 1.40336 1.82881 1.96259 1.21114 0.96812 0.94297 0.95776 0.92796 0.94877 0.93115 0.92119 0.92684 0.92138 0.77440 0.84305 0.83956 0.92195 0.92162 0.87888 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.52 37.15 0.32 -2.57 16 2 C -0.14 -2.97 5.20 -26.74 -0.14 -3.11 16 3 C 0.24 5.60 1.81 -69.08 -0.13 5.48 16 4 H 0.05 1.30 6.07 -51.93 -0.32 0.99 16 5 C -0.61 -16.11 9.09 -34.44 -0.31 -16.43 16 6 H 0.06 1.69 7.95 -52.48 -0.42 1.27 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -26.61 13.70 55.43 0.76 -25.85 16 9 Si 1.05 25.05 25.39 -169.99 -4.32 20.73 16 10 H -0.28 -6.33 6.73 56.52 0.38 -5.95 16 11 H -0.27 -6.31 6.38 56.52 0.36 -5.95 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 N -0.69 -13.49 4.98 -55.95 -0.28 -13.77 16 14 C 0.55 10.24 6.35 -12.44 -0.08 10.16 16 15 O -0.54 -11.75 13.48 5.29 0.07 -11.68 16 16 C -0.13 -1.98 5.87 -104.96 -0.62 -2.59 16 17 C -0.06 -0.67 9.53 -39.21 -0.37 -1.04 16 18 C -0.19 -1.98 9.01 -39.51 -0.36 -2.33 16 19 C 0.11 1.34 6.70 -38.98 -0.26 1.08 16 20 O -0.31 -3.40 10.35 -19.00 -0.20 -3.60 16 21 C 0.02 0.16 9.81 101.05 0.99 1.15 16 22 C 0.06 0.82 7.30 -39.36 -0.29 0.53 16 23 F -0.13 -1.87 17.10 2.25 0.04 -1.83 16 24 C -0.06 -0.86 9.56 -39.15 -0.37 -1.24 16 25 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.99 5.64 -51.93 -0.29 0.70 16 28 H 0.06 1.37 4.43 -51.93 -0.23 1.14 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.27 7.80 8.72 -40.82 -0.36 7.44 16 31 H 0.39 6.64 6.55 -40.82 -0.27 6.38 16 32 H 0.14 1.45 6.39 -52.49 -0.34 1.12 16 33 H 0.14 1.04 6.27 -52.48 -0.33 0.71 16 34 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 35 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.16 2.23 7.64 -52.49 -0.40 1.83 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -31.42 306.65 -5.29 -36.71 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.27 Total: 4.66 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.71 Total: -9.99 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.48 Total: -39.62 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.13 Total: -15.28 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.32 Total: 20.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.42 -5.29 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061669030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.896 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds