Wall clock time and date at job start Tue Mar 31 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35761 * 117.00464 * 2 1 4 4 C 1.38926 * 119.91476 * 0.02562 * 3 2 1 5 5 C 1.37743 * 120.11336 * 179.72099 * 4 3 2 6 6 C 1.39725 * 119.94956 * 0.53467 * 5 4 3 7 7 C 1.47602 * 120.07841 * 179.74483 * 6 5 4 8 8 O 1.21585 * 119.99610 * 200.40341 * 7 6 5 9 9 N 1.34770 * 120.00306 * 20.39843 * 7 6 5 10 10 C 1.46504 * 119.99976 * 6.95754 * 9 7 6 11 11 C 1.46497 * 120.00429 * 186.95648 * 9 7 6 12 12 H 1.09006 * 109.46652 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47140 * 119.99756 * 11 9 7 14 14 C 1.50692 * 109.47386 * 240.00544 * 11 9 7 15 15 H 1.08003 * 119.99887 * 359.97438 * 14 11 9 16 16 C 1.37883 * 120.00259 * 179.97438 * 14 11 9 17 17 N 1.31512 * 119.99811 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00224 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47299 * 89.99875 * 18 16 14 20 20 H 1.48501 * 109.47364 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47027 * 329.99811 * 18 16 14 22 22 C 1.39740 * 119.83551 * 359.46468 * 6 5 4 23 23 C 1.37894 * 119.88683 * 0.25776 * 22 6 5 24 24 F 1.35102 * 119.97474 * 180.02562 * 23 22 6 25 25 H 1.09001 * 109.47401 * 300.00845 * 1 2 3 26 26 H 1.08998 * 109.46926 * 60.00145 * 1 2 3 27 27 H 1.08994 * 109.47888 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.94383 * 359.97438 * 4 3 2 29 29 H 1.07994 * 120.02227 * 180.27227 * 5 4 3 30 30 H 1.08995 * 109.47632 * 266.47544 * 10 9 7 31 31 H 1.09005 * 109.46966 * 26.47440 * 10 9 7 32 32 H 1.09001 * 109.47058 * 146.46971 * 10 9 7 33 33 H 1.09004 * 109.47295 * 180.02562 * 13 11 9 34 34 H 1.09006 * 109.46879 * 60.00713 * 13 11 9 35 35 H 1.09000 * 109.47327 * 300.00396 * 13 11 9 36 36 H 0.97000 * 120.00246 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.05297 * 180.22910 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 0.0005 5 6 1.9083 3.6031 0.0063 6 6 3.3034 3.6797 0.0004 7 6 3.9720 4.9956 0.0009 8 8 5.1256 5.0915 -0.3710 9 7 3.3038 6.0909 0.4135 10 6 1.9697 5.9560 1.0037 11 6 3.9114 7.4164 0.2719 12 1 4.8964 7.3176 -0.1843 13 6 3.0244 8.2919 -0.6155 14 6 4.0482 8.0540 1.6304 15 1 3.7154 7.5250 2.5113 16 6 4.5982 9.3128 1.7490 17 7 5.0039 9.9568 0.6765 18 14 4.7671 10.1035 3.4329 19 1 6.0836 9.7442 4.0187 20 1 4.6713 11.5793 3.2987 21 1 3.6808 9.6156 4.3201 22 6 4.0641 2.5075 -0.0001 23 6 3.4353 1.2803 -0.0001 24 9 4.1690 0.1459 -0.0001 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2087 2.3146 0.0005 29 1 1.3174 4.5070 0.0112 30 1 1.2147 6.0788 0.2272 31 1 1.8700 4.9685 1.4545 32 1 1.8318 6.7201 1.7687 33 1 3.4767 9.2780 -0.7213 34 1 2.0391 8.3907 -0.1597 35 1 2.9255 7.8306 -1.5982 36 1 5.3912 10.8422 0.7599 37 1 5.1428 2.5627 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:05 Heat of formation + Delta-G solvation = -65.274899 kcal Electronic energy + Delta-G solvation = -21946.819574 eV Core-core repulsion = 18412.454344 eV Total energy + Delta-G solvation = -3534.365230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.78629 -40.43067 -39.24462 -37.00953 -35.50852 -33.06317 -30.96923 -30.66670 -29.10263 -27.51999 -26.56400 -25.25550 -23.48761 -22.72825 -21.09571 -19.14952 -18.27135 -17.43985 -16.99470 -16.41359 -16.31622 -15.51071 -15.40724 -15.15487 -14.98383 -14.49496 -14.43527 -14.29325 -13.37756 -13.00351 -12.85384 -12.57779 -12.48420 -12.29095 -12.04685 -11.73769 -11.55933 -11.28293 -11.08659 -10.87328 -10.78594 -10.63066 -10.28633 -10.18573 -9.25800 -9.10463 -9.03876 -8.45693 -8.28885 -7.66708 -6.09949 -4.17990 0.84932 1.05513 2.88056 3.06209 3.26171 3.32948 3.34046 3.71955 3.95718 4.15534 4.37613 4.52749 4.75342 4.84601 4.85007 4.98009 5.10671 5.16922 5.21781 5.42363 5.57357 5.74083 5.81033 5.90821 5.97981 6.23233 6.29512 6.46439 6.70472 6.78220 7.00481 7.04562 7.35107 7.48324 7.67626 7.97119 8.15381 8.43410 8.78422 8.95953 9.48405 10.95514 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029469 B = 0.003994 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.919887 B = 7008.444288 C = 7235.215759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.109 3.891 4 C -0.194 4.194 5 C -0.078 4.078 6 C -0.129 4.129 7 C 0.547 3.453 8 O -0.544 6.544 9 N -0.584 5.584 10 C 0.069 3.931 11 C 0.258 3.742 12 H 0.065 0.935 13 C -0.147 4.147 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.061 4.061 23 C 0.058 3.942 24 F -0.133 7.133 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.012 0.988 36 H 0.264 0.736 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 -14.929 -1.007 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.213 4.213 5 C -0.096 4.096 6 C -0.133 4.133 7 C 0.334 3.666 8 O -0.423 6.423 9 N -0.314 5.314 10 C -0.074 4.074 11 C 0.158 3.842 12 H 0.083 0.917 13 C -0.205 4.205 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.081 4.081 23 C 0.038 3.962 24 F -0.111 7.111 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.159 0.841 29 H 0.180 0.820 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.345 -14.885 -1.252 18.757 hybrid contribution -0.143 0.379 0.945 1.028 sum -11.489 -14.505 -0.307 18.506 Atomic orbital electron populations 1.23135 0.77857 1.04231 1.01724 1.86087 1.21817 1.26018 1.88351 1.19221 0.90777 0.85598 0.98189 1.21099 1.00298 0.91168 1.08715 1.22293 0.94203 0.98922 0.94191 1.19994 0.93505 0.94166 1.05622 1.18007 0.86061 0.83490 0.79041 1.90752 1.16500 1.85780 1.49283 1.48124 1.17021 1.08265 1.58007 1.22204 0.84541 1.02409 0.98240 1.18999 0.93731 0.75383 0.96108 0.91728 1.22099 0.99101 1.03468 0.95852 1.21297 1.41662 1.01194 0.92387 0.92162 1.24888 0.94950 0.96925 0.96957 1.69873 1.40937 1.13787 1.27946 0.86483 0.78605 0.78327 0.83898 1.20570 1.21122 1.19920 1.21114 1.01844 0.88897 0.96246 1.16750 0.85855 0.82840 1.10776 1.91499 1.76621 1.48508 1.94490 0.92240 0.92265 0.88013 0.84107 0.81966 0.93139 0.91359 0.89984 0.88690 0.95072 0.96933 0.92633 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.57 10.35 -18.99 -0.20 -3.77 16 3 C 0.11 1.38 6.70 -38.98 -0.26 1.12 16 4 C -0.19 -2.11 9.01 -39.51 -0.36 -2.46 16 5 C -0.08 -1.00 7.60 -39.21 -0.30 -1.29 16 6 C -0.13 -2.12 5.57 -104.96 -0.58 -2.70 16 7 C 0.55 11.46 7.51 -12.44 -0.09 11.37 16 8 O -0.54 -13.56 15.88 5.29 0.08 -13.47 16 9 N -0.58 -12.18 2.75 -176.47 -0.49 -12.67 16 10 C 0.07 1.09 7.67 59.85 0.46 1.55 16 11 C 0.26 6.46 2.63 -69.09 -0.18 6.27 16 12 H 0.06 1.89 6.92 -51.93 -0.36 1.53 16 13 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 14 C -0.53 -14.00 8.02 -34.44 -0.28 -14.27 16 15 H 0.06 1.57 7.27 -52.48 -0.38 1.19 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 18 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.06 -0.96 9.56 -39.15 -0.37 -1.34 16 23 C 0.06 0.84 7.30 -39.36 -0.29 0.55 16 24 F -0.13 -2.01 17.10 2.25 0.04 -1.97 16 25 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 26 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.14 1.05 6.27 -52.49 -0.33 0.72 16 29 H 0.16 1.83 4.02 -52.49 -0.21 1.62 16 30 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 31 H 0.07 0.91 5.26 -51.93 -0.27 0.63 16 32 H 0.08 1.38 6.98 -51.93 -0.36 1.02 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 34 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.15 2.43 7.79 -52.48 -0.41 2.02 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -31.80 309.05 -5.50 -37.29 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.18 Total: -0.24 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.02 Total: -1.45 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.14 Total: -36.82 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.11 Total: -17.24 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.80 -5.50 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.981 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds