Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35761 * 117.00464 * 2 1 4 4 C 1.38926 * 119.91476 * 0.02562 * 3 2 1 5 5 C 1.37743 * 120.11336 * 179.72099 * 4 3 2 6 6 C 1.39725 * 119.94956 * 0.53467 * 5 4 3 7 7 C 1.47602 * 120.07841 * 179.74483 * 6 5 4 8 8 O 1.21585 * 119.99610 * 200.40341 * 7 6 5 9 9 N 1.34770 * 120.00306 * 20.39843 * 7 6 5 10 10 C 1.46504 * 119.99976 * 6.95754 * 9 7 6 11 11 C 1.46497 * 120.00429 * 186.95648 * 9 7 6 12 12 H 1.09006 * 109.46652 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47140 * 119.99756 * 11 9 7 14 14 C 1.50692 * 109.47386 * 240.00544 * 11 9 7 15 15 H 1.08003 * 119.99887 * 359.97438 * 14 11 9 16 16 C 1.37883 * 120.00259 * 179.97438 * 14 11 9 17 17 N 1.31512 * 119.99811 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00224 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47299 * 89.99875 * 18 16 14 20 20 H 1.48501 * 109.47364 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47027 * 329.99811 * 18 16 14 22 22 C 1.39740 * 119.83551 * 359.46468 * 6 5 4 23 23 C 1.37894 * 119.88683 * 0.25776 * 22 6 5 24 24 F 1.35102 * 119.97474 * 180.02562 * 23 22 6 25 25 H 1.09001 * 109.47401 * 300.00845 * 1 2 3 26 26 H 1.08998 * 109.46926 * 60.00145 * 1 2 3 27 27 H 1.08994 * 109.47888 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.94383 * 359.97438 * 4 3 2 29 29 H 1.07994 * 120.02227 * 180.27227 * 5 4 3 30 30 H 1.08995 * 109.47632 * 266.47544 * 10 9 7 31 31 H 1.09005 * 109.46966 * 26.47440 * 10 9 7 32 32 H 1.09001 * 109.47058 * 146.46971 * 10 9 7 33 33 H 1.09004 * 109.47295 * 180.02562 * 13 11 9 34 34 H 1.09006 * 109.46879 * 60.00713 * 13 11 9 35 35 H 1.09000 * 109.47327 * 300.00396 * 13 11 9 36 36 H 0.97000 * 120.00246 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.05297 * 180.22910 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2871 2.3737 0.0005 5 6 1.9083 3.6031 0.0063 6 6 3.3034 3.6797 0.0004 7 6 3.9720 4.9956 0.0009 8 8 5.1256 5.0915 -0.3710 9 7 3.3038 6.0909 0.4135 10 6 1.9697 5.9560 1.0037 11 6 3.9114 7.4164 0.2719 12 1 4.8964 7.3176 -0.1843 13 6 3.0244 8.2919 -0.6155 14 6 4.0482 8.0540 1.6304 15 1 3.7154 7.5250 2.5113 16 6 4.5982 9.3128 1.7490 17 7 5.0039 9.9568 0.6765 18 14 4.7671 10.1035 3.4329 19 1 6.0836 9.7442 4.0187 20 1 4.6713 11.5793 3.2987 21 1 3.6808 9.6156 4.3201 22 6 4.0641 2.5075 -0.0001 23 6 3.4353 1.2803 -0.0001 24 9 4.1690 0.1459 -0.0001 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2087 2.3146 0.0005 29 1 1.3174 4.5070 0.0112 30 1 1.2147 6.0788 0.2272 31 1 1.8700 4.9685 1.4545 32 1 1.8318 6.7201 1.7687 33 1 3.4767 9.2780 -0.7213 34 1 2.0391 8.3907 -0.1597 35 1 2.9255 7.8306 -1.5982 36 1 5.3912 10.8422 0.7599 37 1 5.1428 2.5627 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -85.956791 kcal Electronic energy + Delta-G solvation = -21947.716409 eV Core-core repulsion = 18412.454344 eV Total energy + Delta-G solvation = -3535.262064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -49.92207 -41.60729 -40.48807 -38.17259 -37.25389 -34.91821 -32.35484 -31.83380 -30.53163 -28.28012 -27.95938 -27.28695 -24.77439 -23.78400 -22.64277 -20.65248 -19.24959 -18.86178 -18.30838 -18.04223 -17.28342 -17.15890 -16.74079 -16.34536 -16.10699 -15.99293 -15.82429 -15.25627 -14.89408 -14.46893 -14.22105 -13.96125 -13.78706 -13.52457 -13.32368 -12.98969 -12.87649 -12.75692 -12.70678 -12.57706 -12.19916 -12.10176 -12.06666 -11.75816 -11.18976 -10.80073 -10.50798 -10.09022 -9.46138 -9.24668 -8.14017 -6.30335 -0.28308 0.00799 1.42338 1.44366 1.53644 1.76292 2.07115 2.22517 2.46158 2.61998 3.11871 3.14579 3.53936 3.61892 3.88360 4.01061 4.32933 4.37060 4.44040 4.46307 4.63234 4.65793 4.77720 4.81514 4.88459 4.93676 4.95694 5.04517 5.08227 5.16084 5.42084 5.49431 5.61287 5.67336 6.04358 6.16879 6.19808 6.75196 6.77135 7.26696 7.44062 8.90465 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029469 B = 0.003994 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.919887 B = 7008.444288 C = 7235.215759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.174 4.174 5 C -0.062 4.062 6 C -0.152 4.152 7 C 0.539 3.461 8 O -0.603 6.603 9 N -0.589 5.589 10 C 0.062 3.938 11 C 0.260 3.740 12 H 0.007 0.993 13 C -0.131 4.131 14 C -0.539 4.539 15 H 0.062 0.938 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.964 3.036 19 H -0.285 1.285 20 H -0.280 1.280 21 H -0.259 1.259 22 C -0.071 4.071 23 C 0.039 3.961 24 F -0.142 7.142 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.190 0.810 29 H 0.185 0.815 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 -16.105 -0.003 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.239 6.239 3 C 0.076 3.924 4 C -0.192 4.192 5 C -0.080 4.080 6 C -0.155 4.155 7 C 0.328 3.672 8 O -0.487 6.487 9 N -0.318 5.318 10 C -0.079 4.079 11 C 0.158 3.842 12 H 0.025 0.975 13 C -0.190 4.190 14 C -0.577 4.577 15 H 0.080 0.920 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.789 3.211 19 H -0.212 1.212 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.091 4.091 23 C 0.019 3.981 24 F -0.120 7.120 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.207 0.793 29 H 0.202 0.798 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.381 -16.087 -0.233 22.258 hybrid contribution 1.015 0.592 0.602 1.320 sum -14.366 -15.495 0.368 21.133 Atomic orbital electron populations 1.23583 0.74918 1.06325 1.03474 1.86098 1.24794 1.25371 1.87640 1.19322 0.90007 0.86955 0.96123 1.21506 1.02320 0.89211 1.06131 1.22465 0.92244 1.00733 0.92508 1.19582 0.95137 0.91342 1.09472 1.18734 0.85537 0.85061 0.77819 1.90707 1.19271 1.86831 1.51861 1.48084 1.18834 1.06722 1.58197 1.22572 0.82410 1.03840 0.99109 1.18607 0.92118 0.77879 0.95548 0.97471 1.21870 0.99364 1.01534 0.96237 1.21571 1.41696 1.01435 0.93024 0.91998 1.25718 0.94600 0.97566 1.00494 1.70018 1.41553 1.14055 1.29977 0.85469 0.78461 0.77521 0.79640 1.21168 1.20501 1.18341 1.20950 1.01165 0.89721 0.97244 1.16833 0.87078 0.82012 1.12196 1.91467 1.77124 1.48741 1.94707 0.90325 0.90457 0.86102 0.79329 0.79816 0.89469 0.88434 0.90962 0.91412 0.92826 0.95824 0.92631 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.33 -6.33 10.35 -90.88 -0.94 -7.27 16 3 C 0.12 2.75 6.70 22.66 0.15 2.90 16 4 C -0.17 -2.90 9.01 22.32 0.20 -2.70 16 5 C -0.06 -1.35 7.60 22.51 0.17 -1.18 16 6 C -0.15 -4.91 5.57 -20.08 -0.11 -5.02 16 7 C 0.54 23.35 7.51 86.72 0.65 24.00 16 8 O -0.60 -32.38 15.88 -3.98 -0.06 -32.44 16 9 N -0.59 -24.67 2.75 -830.49 -2.29 -26.96 16 10 C 0.06 1.77 7.67 127.77 0.98 2.75 16 11 C 0.26 13.46 2.63 44.24 0.12 13.58 16 12 H 0.01 0.46 6.92 -2.38 -0.02 0.44 16 13 C -0.13 -6.14 8.97 71.98 0.65 -5.49 16 14 C -0.54 -29.08 8.02 25.60 0.21 -28.88 16 15 H 0.06 3.24 7.27 -2.91 -0.02 3.21 16 16 C 0.02 0.87 5.30 84.66 0.45 1.31 16 17 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 18 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 C -0.07 -2.29 9.56 22.55 0.22 -2.07 16 23 C 0.04 1.10 7.30 22.41 0.16 1.27 16 24 F -0.14 -4.32 17.10 44.97 0.77 -3.55 16 25 H 0.08 0.38 7.65 -2.39 -0.02 0.36 16 26 H 0.08 0.39 7.65 -2.39 -0.02 0.37 16 27 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.19 1.40 6.27 -2.91 -0.02 1.38 16 29 H 0.19 3.20 4.02 -2.91 -0.01 3.19 16 30 H 0.09 1.89 6.98 -2.39 -0.02 1.87 16 31 H 0.10 2.22 5.26 -2.38 -0.01 2.21 16 32 H 0.07 2.25 6.98 -2.39 -0.02 2.23 16 33 H 0.07 3.55 6.07 -2.38 -0.01 3.54 16 34 H 0.05 2.20 7.67 -2.38 -0.02 2.18 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.13 4.68 7.79 -2.91 -0.02 4.65 16 Total: -1.00 -74.80 309.05 5.81 -69.00 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.11 Total: 7.17 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.95 Total: 1.66 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.04 Total: -79.38 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.00 Total: -39.71 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.77 Total: -3.55 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.80 5.81 -69.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.960 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds