Wall clock time and date at job start Tue Mar 31 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35761 * 116.99553 * 2 1 4 4 C 1.38930 * 119.92186 * 0.02799 * 3 2 1 5 5 C 1.37738 * 120.11880 * 179.71786 * 4 3 2 6 6 C 1.39720 * 119.94637 * 0.53028 * 5 4 3 7 7 C 1.47610 * 120.07935 * 179.74330 * 6 5 4 8 8 O 1.21582 * 120.00054 * 200.41015 * 7 6 5 9 9 N 1.34774 * 119.99712 * 20.41208 * 7 6 5 10 10 C 1.46502 * 120.00147 * 6.95129 * 9 7 6 11 11 C 1.46497 * 119.99709 * 186.95764 * 9 7 6 12 12 H 1.08998 * 109.47329 * 359.97438 * 11 9 7 13 13 C 1.53007 * 109.46922 * 239.99496 * 11 9 7 14 14 C 1.50701 * 109.47480 * 120.00039 * 11 9 7 15 15 H 1.08004 * 119.99685 * 359.97438 * 14 11 9 16 16 C 1.37875 * 120.00192 * 179.97438 * 14 11 9 17 17 N 1.31522 * 120.00015 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99901 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47283 * 270.00159 * 18 16 14 20 20 H 1.48499 * 109.47395 * 30.00047 * 18 16 14 21 21 H 1.48500 * 109.47045 * 150.00263 * 18 16 14 22 22 C 1.39741 * 119.84288 * 359.46955 * 6 5 4 23 23 C 1.37899 * 119.87935 * 0.25375 * 22 6 5 24 24 F 1.35099 * 119.97100 * 180.02562 * 23 22 6 25 25 H 1.08996 * 109.47295 * 59.99700 * 1 2 3 26 26 H 1.09005 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47227 * 299.99445 * 1 2 3 28 28 H 1.08000 * 119.94290 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.02345 * 180.27202 * 5 4 3 30 30 H 1.09000 * 109.47479 * 266.44808 * 10 9 7 31 31 H 1.08996 * 109.47006 * 26.45040 * 10 9 7 32 32 H 1.09001 * 109.46700 * 146.44895 * 10 9 7 33 33 H 1.08999 * 109.47247 * 179.97438 * 13 11 9 34 34 H 1.08995 * 109.47418 * 300.00258 * 13 11 9 35 35 H 1.09008 * 109.46668 * 60.00000 * 13 11 9 36 36 H 0.96996 * 119.99774 * 179.97438 * 17 16 14 37 37 H 1.07990 * 120.05884 * 180.23079 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2869 2.3738 0.0006 5 6 1.9079 3.6032 0.0065 6 6 3.3030 3.6800 0.0006 7 6 3.9715 4.9960 0.0012 8 8 5.1251 5.0920 -0.3708 9 7 3.3032 6.0911 0.4140 10 6 1.9691 5.9560 1.0042 11 6 3.9107 7.4166 0.2724 12 1 4.8960 7.3180 -0.1831 13 6 4.0495 8.0640 1.6518 14 6 3.0368 8.2791 -0.6015 15 1 2.1207 7.8796 -1.0108 16 6 3.4068 9.5781 -0.8784 17 7 4.5227 10.0644 -0.3802 18 14 2.3240 10.6468 -1.9621 19 1 2.7350 10.4900 -3.3805 20 1 0.9066 10.2314 -1.8088 21 1 2.4696 12.0685 -1.5588 22 6 4.0639 2.5079 0.0001 23 6 3.4352 1.2806 0.0000 24 9 4.1690 0.1463 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2086 2.3146 0.0006 29 1 1.3169 4.5071 0.0113 30 1 1.2141 6.0793 0.2278 31 1 1.8694 4.9684 1.4544 32 1 1.8314 6.7198 1.7696 33 1 4.5019 9.0500 1.5466 34 1 3.0644 8.1626 2.1077 35 1 4.6816 7.4402 2.2840 36 1 4.7832 10.9781 -0.5754 37 1 5.1424 2.5632 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:15 Heat of formation + Delta-G solvation = -64.921458 kcal Electronic energy + Delta-G solvation = -21961.448211 eV Core-core repulsion = 18427.098307 eV Total energy + Delta-G solvation = -3534.349904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -48.78550 -40.42336 -39.24327 -37.00602 -35.51462 -33.06741 -30.97227 -30.66509 -29.08890 -27.50101 -26.58588 -25.25938 -23.48400 -22.71965 -21.08821 -19.17752 -18.24245 -17.43274 -17.01187 -16.40145 -16.32072 -15.52025 -15.24963 -15.15160 -15.02723 -14.51211 -14.47997 -14.32897 -13.41325 -13.06785 -12.83774 -12.61840 -12.41418 -12.30435 -12.04014 -11.65381 -11.59821 -11.28112 -11.07760 -10.92549 -10.73823 -10.63202 -10.27957 -10.18688 -9.23765 -9.13478 -9.03366 -8.46760 -8.28129 -7.66354 -6.10943 -4.19654 0.85609 1.06406 2.88858 3.06667 3.24678 3.31561 3.32512 3.75270 3.92167 4.16115 4.36506 4.54318 4.76226 4.85737 4.86187 4.99227 5.11945 5.18015 5.20472 5.42497 5.55124 5.74795 5.87597 5.93009 5.98904 6.18542 6.24732 6.46826 6.73779 6.79628 7.01741 7.05375 7.36729 7.47061 7.66870 7.97446 8.13767 8.43623 8.76690 8.95203 9.47044 10.94352 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.004164 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.413915 B = 6723.376867 C = 7229.939156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.109 3.891 4 C -0.194 4.194 5 C -0.077 4.077 6 C -0.129 4.129 7 C 0.548 3.452 8 O -0.546 6.546 9 N -0.584 5.584 10 C 0.072 3.928 11 C 0.258 3.742 12 H 0.065 0.935 13 C -0.148 4.148 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.274 1.274 21 H -0.285 1.285 22 C -0.062 4.062 23 C 0.057 3.943 24 F -0.133 7.133 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.013 0.987 36 H 0.264 0.736 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 -15.361 3.295 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.213 4.213 5 C -0.095 4.095 6 C -0.133 4.133 7 C 0.335 3.665 8 O -0.425 6.425 9 N -0.314 5.314 10 C -0.071 4.071 11 C 0.158 3.842 12 H 0.083 0.917 13 C -0.206 4.206 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.211 1.211 22 C -0.082 4.082 23 C 0.037 3.963 24 F -0.111 7.111 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.181 0.819 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.388 -15.323 3.119 18.239 hybrid contribution -0.840 0.552 -0.598 1.169 sum -10.228 -14.770 2.521 18.142 Atomic orbital electron populations 1.23139 0.77846 1.04224 1.01750 1.86087 1.21828 1.26012 1.88352 1.19225 0.90779 0.85597 0.98174 1.21108 1.00325 0.91160 1.08664 1.22316 0.94245 0.98977 0.93954 1.19989 0.93523 0.94124 1.05676 1.17993 0.86079 0.83481 0.78914 1.90745 1.16782 1.85878 1.49134 1.48128 1.16878 1.08194 1.58250 1.22172 0.85194 1.01511 0.98210 1.19008 0.95581 0.75657 0.93931 0.91706 1.22095 0.98807 1.03131 0.96572 1.21296 1.07918 0.96860 1.30566 0.92235 1.24892 0.95247 0.97708 0.95882 1.69882 1.22298 1.16140 1.44129 0.86479 0.80562 0.79500 0.80740 1.20586 1.19924 1.21104 1.21101 1.01779 0.88903 0.96379 1.16746 0.85851 0.82829 1.10854 1.91496 1.76612 1.48531 1.94504 0.92237 0.88017 0.92240 0.84095 0.81862 0.92484 0.91479 0.90831 0.88710 0.95048 0.96813 0.92611 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.60 10.35 -18.99 -0.20 -3.80 16 3 C 0.11 1.39 6.70 -38.98 -0.26 1.13 16 4 C -0.19 -2.15 9.01 -39.51 -0.36 -2.51 16 5 C -0.08 -1.01 7.60 -39.21 -0.30 -1.31 16 6 C -0.13 -2.13 5.57 -104.96 -0.58 -2.72 16 7 C 0.55 11.49 7.51 -12.44 -0.09 11.40 16 8 O -0.55 -13.54 15.88 5.29 0.08 -13.45 16 9 N -0.58 -12.19 2.75 -176.46 -0.49 -12.68 16 10 C 0.07 1.14 7.91 59.85 0.47 1.61 16 11 C 0.26 6.47 2.63 -69.08 -0.18 6.29 16 12 H 0.07 1.90 6.92 -51.93 -0.36 1.54 16 13 C -0.15 -3.47 8.94 37.16 0.33 -3.13 16 14 C -0.53 -13.89 8.37 -34.44 -0.29 -14.18 16 15 H 0.06 1.52 7.55 -52.48 -0.40 1.13 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.06 -0.97 9.56 -39.14 -0.37 -1.34 16 23 C 0.06 0.83 7.30 -39.36 -0.29 0.54 16 24 F -0.13 -2.00 17.10 2.25 0.04 -1.96 16 25 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 28 H 0.14 1.10 6.28 -52.49 -0.33 0.77 16 29 H 0.16 1.96 4.02 -52.49 -0.21 1.75 16 30 H 0.06 0.83 6.88 -51.93 -0.36 0.47 16 31 H 0.07 0.86 5.26 -51.93 -0.27 0.59 16 32 H 0.07 1.16 6.44 -51.93 -0.33 0.83 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.03 0.67 6.68 -51.93 -0.35 0.32 16 35 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.15 2.39 7.78 -52.49 -0.41 1.98 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -31.62 308.24 -5.44 -37.06 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.11 Total: 0.09 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.02 Total: -1.40 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.14 Total: -36.75 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.11 Total: -17.25 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.62 -5.44 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.866 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds