Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35957 * 117.00087 * 2 1 4 4 C 1.38661 * 120.06079 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.96582 * 179.70398 * 4 3 2 6 6 C 1.38266 * 120.09630 * 0.54491 * 5 4 3 7 7 C 1.50697 * 119.93871 * 179.72672 * 6 5 4 8 8 C 1.50708 * 109.47045 * 269.72878 * 7 6 5 9 9 O 1.21279 * 119.99869 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99741 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47175 * 35.00237 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00368 * 11 10 8 14 14 C 1.50697 * 109.46896 * 155.00439 * 11 10 8 15 15 H 1.07994 * 120.00496 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99687 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00216 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00016 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47172 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47304 * 120.00302 * 18 16 14 21 21 H 1.48502 * 109.47432 * 240.00422 * 18 16 14 22 22 C 1.38251 * 120.12397 * 359.45236 * 6 5 4 23 23 C 1.38339 * 120.02943 * 0.27450 * 22 6 5 24 24 F 1.35104 * 120.04678 * 179.97438 * 23 22 6 25 25 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47147 * 300.00451 * 1 2 3 27 27 H 1.09005 * 109.46931 * 59.99518 * 1 2 3 28 28 H 1.07996 * 120.01815 * 359.97432 * 4 3 2 29 29 H 1.08005 * 119.95594 * 180.28934 * 5 4 3 30 30 H 1.08994 * 109.47401 * 149.72738 * 7 6 5 31 31 H 1.09002 * 109.47316 * 29.72135 * 7 6 5 32 32 H 0.96997 * 120.00149 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47050 * 299.99945 * 13 11 10 34 34 H 1.09001 * 109.46801 * 60.00058 * 13 11 10 35 35 H 1.09001 * 109.46998 * 179.97438 * 13 11 10 36 36 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 37 37 H 1.07998 * 119.98350 * 180.25274 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6776 0.0010 7 6 3.9851 5.0211 0.0015 8 6 4.2126 5.4696 -1.4192 9 8 3.8559 4.7671 -2.3412 10 7 4.8124 6.6513 -1.6649 11 6 5.0340 7.0869 -3.0460 12 1 4.2043 6.7541 -3.6696 13 6 6.3390 6.4825 -3.5682 14 6 5.1239 8.5906 -3.0900 15 1 5.0253 9.1644 -2.1804 16 6 5.3319 9.2338 -4.2917 17 7 5.4515 8.5352 -5.3995 18 14 5.4426 11.0977 -4.3464 19 1 5.2765 11.6440 -2.9756 20 1 6.7683 11.4994 -4.8815 21 1 4.3716 11.6316 -5.2256 22 6 4.0580 2.5198 0.0005 23 6 3.4333 1.2855 0.0000 24 9 4.1713 0.1539 -0.0010 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.2138 2.3201 0.0005 29 1 1.3343 4.5115 0.0119 30 1 4.9431 4.9417 0.5153 31 1 3.3563 5.7480 0.5156 32 1 5.0980 7.2129 -0.9275 33 1 7.1687 6.8153 -2.9447 34 1 6.2739 5.3949 -3.5363 35 1 6.5037 6.8063 -4.5959 36 1 5.5982 8.9877 -6.2448 37 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = -102.115605 kcal Electronic energy + Delta-G solvation = -21300.693455 eV Core-core repulsion = 17764.730692 eV Total energy + Delta-G solvation = -3535.962763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.72372 -40.17621 -38.99136 -37.45227 -34.77492 -32.48313 -31.99233 -30.75207 -29.20212 -28.00638 -26.31387 -25.25187 -22.82016 -22.16639 -20.79482 -19.39966 -18.39724 -17.20590 -16.98206 -16.71884 -16.21017 -15.68588 -15.22661 -15.07011 -14.87974 -14.62662 -14.35996 -14.23867 -13.70220 -13.10015 -12.98516 -12.40910 -12.35494 -12.26737 -11.89548 -11.66941 -11.49634 -11.21808 -11.12506 -11.06242 -10.94335 -10.71144 -10.30666 -10.24875 -9.10008 -9.04420 -8.90290 -8.56423 -8.11245 -7.90983 -6.13327 -4.22806 1.13984 1.20758 3.00965 3.22499 3.30230 3.32651 3.39473 3.47962 4.16219 4.22299 4.41456 4.60328 4.67769 4.84507 4.92847 5.07606 5.18878 5.21753 5.23373 5.42610 5.45446 5.59463 5.65620 5.87511 6.04929 6.10965 6.49470 6.58761 6.82645 6.96853 7.15307 7.17844 7.46219 7.55986 7.68973 7.91259 8.14734 8.66450 8.77704 9.13394 9.45103 10.92620 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.003234 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.050164 B = 8655.273931 C = 8849.400105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.088 3.912 4 C -0.179 4.179 5 C -0.075 4.075 6 C -0.060 4.060 7 C -0.104 4.104 8 C 0.500 3.500 9 O -0.547 6.547 10 N -0.710 5.710 11 C 0.264 3.736 12 H 0.048 0.952 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.102 4.102 23 C 0.069 3.931 24 F -0.135 7.135 25 H 0.100 0.900 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.389 0.611 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.090 0.910 36 H 0.264 0.736 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -10.917 13.948 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.093 4.093 6 C -0.061 4.061 7 C -0.145 4.145 8 C 0.285 3.715 9 O -0.426 6.426 10 N -0.358 5.358 11 C 0.162 3.838 12 H 0.066 0.934 13 C -0.206 4.206 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.121 4.121 23 C 0.050 3.950 24 F -0.114 7.114 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.221 0.779 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.536 -11.617 13.047 19.026 hybrid contribution 0.130 1.248 0.157 1.265 sum -7.406 -10.369 13.203 18.349 Atomic orbital electron populations 1.23087 0.78170 1.04014 1.01524 1.86112 1.21544 1.26011 1.89003 1.18942 0.90768 0.85499 1.00614 1.21044 1.00070 0.91397 1.07294 1.20867 0.93863 0.97335 0.97249 1.19098 0.93215 0.93706 1.00105 1.20724 1.02347 0.94479 0.96913 1.20288 0.78816 0.82331 0.90101 1.90688 1.51587 1.54236 1.46055 1.46530 1.58798 1.19026 1.11490 1.18735 0.94743 0.93592 0.76687 0.93426 1.22079 0.98165 0.96418 1.03925 1.21261 1.51131 0.90621 0.94170 0.92016 1.24903 0.94736 0.98759 0.95395 1.69917 1.48325 1.35293 0.98531 0.86394 0.77719 0.84838 0.78142 1.19733 1.20882 1.20887 1.20839 1.00949 0.89736 1.00536 1.16861 0.85880 0.82844 1.09457 1.91481 1.76474 1.49061 1.94395 0.88161 0.92550 0.92384 0.84609 0.85047 0.88250 0.88104 0.77908 0.95481 0.96661 0.89191 0.92625 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.99 10.36 -19.61 -0.20 -4.19 16 3 C 0.09 1.20 6.69 -39.18 -0.26 0.94 16 4 C -0.18 -2.14 9.04 -39.45 -0.36 -2.50 16 5 C -0.07 -0.95 9.69 -39.59 -0.38 -1.33 16 6 C -0.06 -0.84 4.37 -104.61 -0.46 -1.29 16 7 C -0.10 -1.36 5.83 -29.03 -0.17 -1.53 16 8 C 0.50 9.52 7.79 -10.98 -0.09 9.43 16 9 O -0.55 -12.91 15.70 5.56 0.09 -12.82 16 10 N -0.71 -14.25 5.07 -54.93 -0.28 -14.53 16 11 C 0.26 6.66 2.56 -69.08 -0.18 6.48 16 12 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 13 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 14 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 18 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.10 -1.44 9.67 -39.54 -0.38 -1.82 16 23 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 24 F -0.14 -2.11 17.11 2.25 0.04 -2.07 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.14 1.22 6.30 -52.49 -0.33 0.89 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.39 6.57 8.54 -40.82 -0.35 6.22 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -32.71 323.04 -6.18 -38.89 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.68 Total: 4.29 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.62 Total: -5.63 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.35 Total: -38.76 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.12 Total: -17.02 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.71 -6.18 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.228 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds