Wall clock time and date at job start Tue Mar 31 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 2 15 15 C 1.38141 * 119.98531 * 260.00398 * 14 13 12 16 16 C 1.38430 * 120.00633 * 180.02562 * 15 14 13 17 17 F 1.35100 * 119.98349 * 180.08677 * 16 15 14 18 18 C 1.38445 * 120.03362 * 0.06787 * 16 15 14 19 19 C 1.38223 * 120.08508 * 359.93965 * 18 16 15 20 20 C 1.38622 * 119.94218 * 359.69356 * 19 18 16 21 21 O 1.36020 * 120.52755 * 180.11846 * 20 19 18 22 22 C 1.43052 * 116.91227 * 343.78779 * 21 20 19 23 23 O 1.43252 * 108.60721 * 47.25529 * 22 21 20 24 24 C 1.43080 * 113.03867 * 294.54530 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 30 30 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 31 31 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 32 32 H 1.08002 * 119.99715 * 359.97438 * 15 14 13 33 33 H 1.07993 * 119.95710 * 179.97438 * 18 16 15 34 34 H 1.09005 * 109.60733 * 287.51807 * 22 21 20 35 35 H 1.09001 * 109.61200 * 166.99608 * 22 21 20 36 36 H 1.08999 * 109.49506 * 288.64509 * 24 23 22 37 37 H 1.08998 * 109.52514 * 168.56039 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5214 3.5558 15 6 1.6985 -0.9738 4.5106 16 6 2.1630 -1.6568 5.6215 17 9 1.2920 -2.1005 6.5541 18 6 3.5194 -1.8858 5.7771 19 6 4.4122 -1.4342 4.8234 20 6 3.9479 -0.7567 3.7067 21 8 4.8156 -0.3092 2.7596 22 6 6.1970 -0.2446 3.1259 23 8 6.5601 -1.4771 3.7592 24 6 5.8878 -1.6860 5.0048 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.4495 -1.4979 1.4101 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 0.6404 -0.7938 4.3908 33 1 3.8804 -2.4184 6.6444 34 1 6.3535 0.5827 3.8183 35 1 6.8056 -0.0984 2.2336 36 1 6.2849 -0.9991 5.7522 37 1 6.0436 -2.7129 5.3352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068616819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:14 Heat of formation + Delta-G solvation = -101.525654 kcal Electronic energy + Delta-G solvation = -22005.415652 eV Core-core repulsion = 18469.478471 eV Total energy + Delta-G solvation = -3535.937181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = -0.79 seconds Orbital eigenvalues (eV) -48.83671 -40.96877 -38.06083 -36.45314 -35.85544 -33.08681 -31.69252 -30.40557 -28.11729 -26.63679 -25.89646 -25.17044 -24.52116 -21.51288 -20.96316 -20.14830 -18.58358 -17.51456 -17.31647 -16.34267 -16.06437 -15.70685 -15.38009 -15.19456 -14.76547 -14.43306 -14.33408 -14.16865 -13.65257 -13.46894 -13.12398 -12.76391 -12.47746 -12.11995 -11.97274 -11.69315 -11.46898 -11.02435 -10.90006 -10.80994 -10.72577 -10.47917 -10.30068 -10.10748 -9.84440 -9.01275 -8.89299 -8.31800 -8.05312 -7.18499 -5.94214 -3.96853 1.01429 1.18313 3.13622 3.38118 3.40996 3.41406 3.45724 3.55321 4.09171 4.45317 4.49582 4.53472 4.64888 4.93411 5.04677 5.11786 5.17547 5.32111 5.37328 5.51114 5.52758 5.64261 5.89682 5.95665 6.06297 6.27790 6.40840 6.53431 6.69120 6.72158 6.86317 7.11251 7.34730 7.40286 7.76571 7.92710 8.30402 8.56682 8.64931 9.10232 9.68076 11.12849 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.004774 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.968982 B = 5863.718230 C = 6929.115082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.672 5.672 13 C 0.105 3.895 14 C -0.068 4.068 15 C -0.113 4.113 16 C 0.063 3.937 17 F -0.143 7.143 18 C -0.116 4.116 19 C -0.186 4.186 20 C 0.152 3.848 21 O -0.299 6.299 22 C 0.220 3.780 23 O -0.386 6.386 24 C 0.106 3.894 25 H 0.028 0.972 26 H 0.089 0.911 27 H 0.004 0.996 28 H 0.259 0.741 29 H 0.324 0.676 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -1.837 17.416 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.024 4.024 14 C -0.069 4.069 15 C -0.133 4.133 16 C 0.044 3.956 17 F -0.122 7.122 18 C -0.135 4.135 19 C -0.188 4.188 20 C 0.106 3.894 21 O -0.213 6.213 22 C 0.107 3.893 23 O -0.305 6.305 24 C 0.030 3.970 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.161 0.839 36 H 0.090 0.910 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.859 -1.700 16.834 18.656 hybrid contribution -0.954 -0.320 -0.181 1.022 sum 6.905 -2.020 16.654 18.141 Atomic orbital electron populations 1.22451 1.00765 0.99215 1.00485 1.19180 0.89471 0.94469 0.86332 0.94790 1.21114 1.30019 1.12381 0.89511 0.91982 1.24937 0.95386 0.95230 0.98978 1.69870 1.37423 1.23279 1.23372 0.86568 0.79192 0.79598 0.82042 1.20421 1.21517 1.20297 1.60842 1.58119 1.08601 1.02587 1.20732 0.98416 0.95244 0.88016 1.19435 0.89929 1.00219 0.97299 1.20960 1.00764 0.98672 0.92890 1.17386 0.87034 1.02018 0.89158 1.91476 1.68926 1.87778 1.63999 1.20536 0.91017 1.01936 1.00016 1.20083 0.97397 1.04389 0.96905 1.18307 0.89830 0.93782 0.87514 1.86518 1.17518 1.79917 1.37353 1.24538 0.80438 0.85963 0.98366 1.88295 1.65325 1.41246 1.35622 1.21475 0.86327 1.03189 0.86026 0.95329 0.89204 0.97667 0.93079 0.85917 0.90191 0.95207 0.84149 0.84587 0.92272 0.83853 0.91049 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.38 2.57 -68.87 -0.18 5.20 16 3 H 0.03 0.94 7.80 -51.93 -0.40 0.53 16 4 C -0.49 -13.77 8.84 -34.44 -0.30 -14.08 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.67 -14.55 6.22 -109.22 -0.68 -15.23 16 13 C 0.11 1.92 5.26 -4.98 -0.03 1.89 16 14 C -0.07 -1.07 5.41 -104.46 -0.56 -1.64 16 15 C -0.11 -1.59 9.64 -39.55 -0.38 -1.97 16 16 C 0.06 0.83 7.30 -39.43 -0.29 0.55 16 17 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 18 C -0.12 -1.36 9.69 -39.51 -0.38 -1.74 16 19 C -0.19 -2.37 5.82 -104.45 -0.61 -2.98 16 20 C 0.15 2.36 6.54 -39.24 -0.26 2.10 16 21 O -0.30 -4.86 9.67 -43.69 -0.42 -5.29 16 22 C 0.22 2.61 7.95 101.05 0.80 3.41 16 23 O -0.39 -4.84 10.97 -59.11 -0.65 -5.49 16 24 C 0.11 1.08 6.87 36.04 0.25 1.32 16 25 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 27 H 0.00 0.09 7.45 -51.93 -0.39 -0.29 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.32 6.79 8.46 -39.29 -0.33 6.46 16 30 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16 31 H 0.03 0.52 7.30 -51.93 -0.38 0.14 16 32 H 0.14 1.79 8.04 -52.49 -0.42 1.37 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -30.80 314.15 -7.79 -38.59 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.72 Total: 3.25 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -1.70 Total: -10.25 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.05 Total: -40.45 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.07 Total: -10.77 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.80 -7.79 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068616819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.935 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.79 seconds