Wall clock time and date at job start Tue Mar 31 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35654 * 116.99806 * 2 1 4 4 C 1.38634 * 120.14188 * 0.23728 * 3 2 1 5 5 C 1.38130 * 120.15748 * 180.29729 * 4 3 2 6 6 C 1.38415 * 120.43458 * 359.71971 * 5 4 3 7 7 C 1.38135 * 120.27335 * 0.02562 * 6 5 4 8 8 F 1.35098 * 120.08516 * 179.97438 * 7 6 5 9 9 C 1.39968 * 119.83323 * 359.97438 * 7 6 5 10 10 C 1.47391 * 120.21176 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99540 * 90.00064 * 10 9 7 12 12 N 1.34769 * 120.00262 * 270.00317 * 10 9 7 13 13 C 1.46502 * 120.00125 * 359.97438 * 12 10 9 14 14 C 1.46500 * 120.00163 * 179.97438 * 12 10 9 15 15 H 1.08998 * 109.46845 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47473 * 240.00131 * 14 12 10 17 17 C 1.50706 * 109.47187 * 119.99734 * 14 12 10 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 14 12 20 20 N 1.31510 * 120.00308 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99908 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46754 * 90.00468 * 21 19 17 23 23 H 1.48498 * 109.47278 * 210.00299 * 21 19 17 24 24 H 1.48498 * 109.47109 * 330.00728 * 21 19 17 25 25 H 1.09003 * 109.47029 * 59.99715 * 1 2 3 26 26 H 1.09004 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47265 * 299.99851 * 1 2 3 28 28 H 1.08004 * 119.91706 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.78372 * 179.70301 * 5 4 3 30 30 H 1.08002 * 119.86678 * 180.02562 * 6 5 4 31 31 H 1.08993 * 109.47565 * 270.00429 * 13 12 10 32 32 H 1.09007 * 109.46761 * 30.00462 * 13 12 10 33 33 H 1.09002 * 109.46792 * 150.00115 * 13 12 10 34 34 H 1.09002 * 109.47153 * 59.99757 * 16 14 12 35 35 H 1.09001 * 109.46832 * 299.99948 * 16 14 12 36 36 H 1.09004 * 109.47261 * 179.97438 * 16 14 12 37 37 H 0.96998 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2926 2.3732 0.0050 5 6 1.9193 3.6042 -0.0012 6 6 3.3009 3.6875 -0.0066 7 6 4.0679 2.5387 -0.0063 8 9 5.4162 2.6245 -0.0121 9 6 3.4447 1.2854 -0.0001 10 6 4.2549 0.0542 -0.0003 11 8 4.5939 -0.4508 1.0527 12 7 4.6202 -0.5119 -1.1675 13 6 4.2115 0.0961 -2.4362 14 6 5.4260 -1.7354 -1.1677 15 1 5.6302 -2.0361 -0.1401 16 6 6.7465 -1.4764 -1.8958 17 6 4.6714 -2.8338 -1.8715 18 1 3.6900 -2.6398 -2.2783 19 6 5.2345 -4.0861 -1.9969 20 7 6.4298 -4.3223 -1.5020 21 14 4.2994 -5.4474 -2.8698 22 1 4.6308 -5.4260 -4.3173 23 1 4.6842 -6.7607 -2.2933 24 1 2.8400 -5.2376 -2.6930 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2140 2.3178 0.0093 29 1 1.3274 4.5075 -0.0022 30 1 3.7814 4.6548 -0.0110 31 1 3.2519 -0.3182 -2.7452 32 1 4.1174 1.1746 -2.3085 33 1 4.9612 -0.1155 -3.1986 34 1 7.2923 -0.6819 -1.3867 35 1 6.5419 -1.1759 -2.9234 36 1 7.3462 -2.3866 -1.8955 37 1 6.8258 -5.2034 -1.5899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:32 Heat of formation + Delta-G solvation = -81.756868 kcal Electronic energy + Delta-G solvation = -22734.596919 eV Core-core repulsion = 19199.516977 eV Total energy + Delta-G solvation = -3535.079942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.86426 -40.36410 -38.58621 -37.15623 -35.22867 -32.84604 -31.30042 -29.99716 -29.10764 -27.40451 -26.08691 -25.15876 -23.95221 -22.26141 -21.13096 -19.00079 -18.17595 -17.02171 -16.82851 -16.26124 -16.03217 -15.92989 -15.52452 -15.27247 -14.88120 -14.64098 -14.24479 -14.00630 -13.11865 -12.84699 -12.58888 -12.49271 -12.42424 -12.26679 -11.74708 -11.50862 -11.48139 -11.32367 -11.12308 -11.03284 -10.75002 -10.65317 -10.21811 -10.11424 -9.14319 -9.09577 -8.77864 -8.39263 -8.34535 -7.52740 -6.01328 -4.08615 0.94429 1.17158 3.06675 3.29027 3.30566 3.36632 3.39530 3.41174 3.95395 4.30615 4.44240 4.60716 4.84121 4.95663 5.00959 5.07349 5.17498 5.23195 5.29889 5.44755 5.73607 5.81366 5.93641 5.99590 6.14125 6.15979 6.36302 6.58657 6.82928 6.89709 7.11691 7.24747 7.48881 7.57583 7.77313 8.07594 8.25201 8.56279 8.88070 9.07188 9.57029 11.04225 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.005947 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.967739 B = 4707.443253 C = 5562.448312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.188 3.812 4 C -0.225 4.225 5 C -0.044 4.044 6 C -0.196 4.196 7 C 0.166 3.834 8 F -0.124 7.124 9 C -0.179 4.179 10 C 0.561 3.439 11 O -0.540 6.540 12 N -0.578 5.578 13 C 0.091 3.909 14 C 0.258 3.742 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.012 0.988 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 15.458 -0.555 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.140 3.860 4 C -0.244 4.244 5 C -0.063 4.063 6 C -0.215 4.215 7 C 0.145 3.855 8 F -0.102 7.102 9 C -0.184 4.184 10 C 0.346 3.654 11 O -0.418 6.418 12 N -0.308 5.308 13 C -0.053 4.053 14 C 0.158 3.842 15 H 0.082 0.918 16 C -0.206 4.206 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.076 0.924 26 H 0.122 0.878 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.888 14.787 -0.009 18.363 hybrid contribution -0.554 -0.577 -0.599 0.999 sum -11.442 14.211 -0.608 18.255 Atomic orbital electron populations 1.23159 0.77872 1.04603 1.01190 1.86234 1.21625 1.25696 1.87060 1.18635 0.89966 0.85074 0.92287 1.21206 1.00443 0.91797 1.10910 1.20779 0.93388 0.97305 0.94792 1.20922 0.94291 0.97322 1.09010 1.17302 0.77232 0.92276 0.98661 1.91557 1.28610 1.96871 1.93184 1.19442 0.92200 0.94561 1.12157 1.17619 0.79889 0.83073 0.84839 1.90754 1.56165 1.63709 1.31151 1.48152 1.51317 1.27284 1.04060 1.21502 1.00629 0.95754 0.87412 1.18992 0.87207 0.79023 0.98993 0.91833 1.22099 0.99242 1.01288 0.97933 1.21308 1.02879 0.94879 1.36877 0.92220 1.24889 0.95025 0.98347 0.95585 1.69881 1.15118 1.22388 1.45337 0.86486 0.80095 0.81246 0.79495 1.20665 1.21134 1.19982 0.92382 0.87755 0.92451 0.84472 0.84581 0.84248 0.93243 0.93490 0.90676 0.96841 0.95064 0.88688 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.90 9.95 -18.66 -0.19 -5.08 16 3 C 0.19 2.96 6.70 -38.70 -0.26 2.71 16 4 C -0.22 -2.52 9.03 -39.47 -0.36 -2.88 16 5 C -0.04 -0.43 10.02 -39.56 -0.40 -0.83 16 6 C -0.20 -2.30 10.01 -39.55 -0.40 -2.69 16 7 C 0.17 2.66 6.85 -38.97 -0.27 2.39 16 8 F -0.12 -2.19 16.83 2.25 0.04 -2.15 16 9 C -0.18 -3.33 3.93 -104.79 -0.41 -3.74 16 10 C 0.56 13.28 6.29 -12.54 -0.08 13.20 16 11 O -0.54 -14.97 16.43 5.27 0.09 -14.88 16 12 N -0.58 -13.61 2.75 -176.55 -0.49 -14.09 16 13 C 0.09 1.73 9.50 59.85 0.57 2.30 16 14 C 0.26 6.97 2.64 -69.08 -0.18 6.79 16 15 H 0.06 1.98 6.90 -51.93 -0.36 1.63 16 16 C -0.15 -3.69 8.95 37.16 0.33 -3.36 16 17 C -0.52 -14.60 8.37 -34.44 -0.29 -14.89 16 18 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 21 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 28 H 0.14 1.11 6.29 -52.48 -0.33 0.78 16 29 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.77 6.55 -51.92 -0.34 0.43 16 33 H 0.07 1.39 6.43 -51.93 -0.33 1.06 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -34.37 316.24 -5.48 -39.85 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.47 Total: -1.69 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.84 Total: 1.95 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.14 Total: -39.22 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.10 Total: -19.96 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.37 -5.48 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.904 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds