Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47362 * 2 1 4 4 N 1.46497 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.36895 * 120.00099 * 274.27335 * 4 3 2 6 6 H 1.07998 * 119.99867 * 173.89901 * 5 4 3 7 7 C 1.39033 * 119.99756 * 353.90357 * 5 4 3 8 8 N 1.31370 * 120.00214 * 31.90592 * 7 5 4 9 9 Si 1.86798 * 119.99646 * 211.90387 * 7 5 4 10 10 H 1.48499 * 109.47460 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47272 * 119.99889 * 9 7 5 12 12 H 1.48500 * 109.47506 * 239.99799 * 9 7 5 13 13 C 1.34778 * 120.00100 * 94.27036 * 4 3 2 14 14 O 1.21602 * 120.00214 * 186.20052 * 13 4 3 15 15 C 1.47594 * 119.99774 * 5.93031 * 13 4 3 16 16 C 1.39777 * 120.14965 * 55.89921 * 15 13 4 17 17 C 1.37831 * 119.97487 * 179.76635 * 16 15 13 18 18 C 1.38430 * 120.27278 * 0.49423 * 17 16 15 19 19 C 1.38638 * 120.30014 * 359.78177 * 18 17 16 20 20 O 1.35963 * 119.99196 * 179.97438 * 19 18 17 21 21 C 1.42894 * 117.00026 * 359.97199 * 20 19 18 22 22 C 1.38787 * 120.01759 * 359.95614 * 19 18 17 23 23 F 1.35098 * 120.13865 * 180.02562 * 22 19 18 24 24 H 1.09002 * 109.46765 * 299.99998 * 1 2 3 25 25 H 1.08998 * 109.47159 * 59.99569 * 1 2 3 26 26 H 1.08997 * 109.47426 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46765 * 240.00002 * 2 1 3 28 28 H 1.08998 * 109.47159 * 120.00431 * 2 1 3 29 29 H 1.09002 * 109.47179 * 60.00255 * 3 2 1 30 30 H 1.08998 * 109.47335 * 300.00323 * 3 2 1 31 31 H 0.97001 * 120.00164 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.01007 * 0.02562 * 16 15 13 33 33 H 1.08000 * 119.86327 * 180.23283 * 17 16 15 34 34 H 1.08004 * 119.85066 * 179.76844 * 18 17 16 35 35 H 1.08999 * 109.47395 * 300.00615 * 21 20 19 36 36 H 1.09001 * 109.46961 * 60.00348 * 21 20 19 37 37 H 1.09006 * 109.47302 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.3539 1.1813 6 1 5.2654 1.2546 1.1760 7 6 3.5012 1.3918 2.3884 8 7 2.2863 0.8984 2.4672 9 14 4.3035 2.1442 3.8982 10 1 5.6639 2.6257 3.5479 11 1 3.4834 3.2856 4.3777 12 1 4.4009 1.1203 4.9693 13 6 4.1785 1.5295 -1.1648 14 8 5.3891 1.4163 -1.1769 15 6 3.4459 1.7563 -2.4259 16 6 2.6019 2.8626 -2.5583 17 6 1.9232 3.0736 -3.7392 18 6 2.0654 2.1881 -4.7937 19 6 2.8951 1.0839 -4.6727 20 8 3.0298 0.2179 -5.7122 21 6 2.2866 0.5071 -6.8979 22 6 3.5885 0.8626 -3.4911 23 9 4.3980 -0.2123 -3.3707 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.8059 0.9245 3.3095 32 1 2.4849 3.5541 -1.7370 33 1 1.2745 3.9311 -3.8408 34 1 1.5275 2.3580 -5.7146 35 1 1.2219 0.5218 -6.6650 36 1 2.5869 1.4801 -7.2867 37 1 2.4839 -0.2603 -7.6466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090370848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -73.110744 kcal Electronic energy + Delta-G solvation = -22761.170768 eV Core-core repulsion = 19226.465750 eV Total energy + Delta-G solvation = -3534.705018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.24113 -39.91036 -38.74162 -36.76076 -35.30372 -32.38558 -31.49330 -30.45766 -30.03213 -27.33216 -25.93978 -24.81909 -22.80055 -22.29730 -20.65667 -19.66459 -17.89952 -16.93690 -16.88521 -16.49321 -16.06060 -15.75962 -14.84000 -14.69722 -14.44909 -14.35281 -14.17261 -13.64323 -13.52860 -13.13755 -12.51908 -12.43947 -12.27959 -12.08513 -11.85099 -11.45849 -11.32991 -11.18368 -11.12519 -10.99772 -10.75364 -10.39128 -10.35497 -10.16228 -9.64549 -8.79572 -8.66635 -8.35111 -8.02299 -7.84746 -6.51167 -3.77703 1.22553 1.46902 3.05719 3.17791 3.23871 3.32094 3.59293 3.97524 4.10050 4.48618 4.76670 4.84808 4.94968 5.03878 5.05636 5.20927 5.32712 5.39718 5.48130 5.71218 5.98481 6.01502 6.12173 6.23608 6.27496 6.37895 6.44986 6.58310 6.68949 6.77471 6.83558 6.90585 7.27884 7.40335 7.44819 7.70094 8.02544 8.43685 9.09779 9.33892 9.92241 10.47912 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.005562 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.068052 B = 5032.667701 C = 5401.498583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.110 3.890 4 N -0.421 5.421 5 C -0.311 4.311 6 H 0.110 0.890 7 C 0.039 3.961 8 N -0.844 5.844 9 Si 0.913 3.087 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.465 3.535 14 O -0.581 6.581 15 C -0.078 4.078 16 C -0.106 4.106 17 C -0.097 4.097 18 C -0.186 4.186 19 C 0.086 3.914 20 O -0.312 6.312 21 C 0.028 3.972 22 C 0.102 3.898 23 F -0.121 7.121 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.269 0.731 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 3.049 -11.651 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.013 4.013 4 N -0.136 5.136 5 C -0.437 4.437 6 H 0.127 0.873 7 C -0.166 4.166 8 N -0.481 5.481 9 Si 0.739 3.261 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.254 3.746 14 O -0.467 6.467 15 C -0.083 4.083 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.205 4.205 19 C 0.040 3.960 20 O -0.225 6.225 21 C -0.067 4.067 22 C 0.081 3.919 23 F -0.100 7.100 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.371 2.735 -11.469 13.905 hybrid contribution 0.018 0.197 0.573 0.606 sum -7.353 2.932 -10.896 13.468 Atomic orbital electron populations 1.21580 0.97200 1.00058 1.00470 1.21813 0.94031 0.98030 1.02075 1.21973 0.80315 0.97587 1.01398 1.43802 1.05625 1.59346 1.04854 1.19785 0.93699 1.48771 0.81488 0.87255 1.25249 0.95941 0.96273 0.99164 1.70227 1.13315 1.37555 1.27011 0.86094 0.80087 0.79313 0.80640 1.18985 1.20437 1.20829 1.17357 0.87224 0.87575 0.82488 1.90646 1.13427 1.57011 1.85662 1.20243 0.97919 0.95003 0.95120 1.21132 0.96128 0.97034 0.98243 1.20836 0.99424 0.98931 0.92362 1.21052 1.02526 0.95797 1.01120 1.18820 0.97870 0.91721 0.87563 1.86138 1.66336 1.47947 1.22097 1.23053 0.95831 1.02336 0.85448 1.16941 0.95083 0.87500 0.92420 1.91518 1.70272 1.52050 1.96135 0.92633 0.94526 0.94096 0.95388 0.88178 0.87920 0.93599 0.92033 0.84519 0.85085 0.84865 0.92613 0.92648 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -2.00 16 2 C -0.12 -2.61 5.71 -26.73 -0.15 -2.76 16 3 C 0.11 2.45 4.51 -4.05 -0.02 2.43 16 4 N -0.42 -10.81 2.62 -115.98 -0.30 -11.11 16 5 C -0.31 -8.50 9.39 -15.00 -0.14 -8.64 16 6 H 0.11 3.21 7.34 -52.49 -0.39 2.83 16 7 C 0.04 0.98 4.97 -17.45 -0.09 0.89 16 8 N -0.84 -20.56 8.44 55.50 0.47 -20.09 16 9 Si 0.91 19.78 29.65 -169.99 -5.04 14.74 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.47 12.10 6.77 -12.44 -0.08 12.02 16 14 O -0.58 -17.34 16.53 5.28 0.09 -17.26 16 15 C -0.08 -1.67 4.87 -104.93 -0.51 -2.18 16 16 C -0.11 -1.81 7.50 -39.16 -0.29 -2.10 16 17 C -0.10 -1.30 10.02 -39.66 -0.40 -1.70 16 18 C -0.19 -2.48 9.03 -39.36 -0.36 -2.83 16 19 C 0.09 1.44 6.69 -39.23 -0.26 1.18 16 20 O -0.31 -4.79 10.36 -19.62 -0.20 -4.99 16 21 C 0.03 0.27 9.81 101.05 0.99 1.26 16 22 C 0.10 2.12 7.29 -38.80 -0.28 1.84 16 23 F -0.12 -2.84 16.55 2.25 0.04 -2.80 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 2.45 6.34 -51.93 -0.33 2.12 16 29 H 0.10 2.38 5.82 -51.93 -0.30 2.08 16 30 H 0.05 0.90 4.51 -51.93 -0.23 0.67 16 31 H 0.27 6.16 8.31 -40.82 -0.34 5.83 16 32 H 0.14 2.20 7.65 -52.49 -0.40 1.80 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.28 6.27 -52.48 -0.33 0.95 16 35 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -31.56 312.29 -5.92 -37.48 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.45 Total: 1.92 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.23 Total: -2.60 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.16 Total: -31.20 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.12 Total: -22.25 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.04 Total: 14.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.56 -5.92 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090370848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.629 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds