Wall clock time and date at job start Tue Mar 31 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.50699 * 109.47331 * 120.00007 * 2 1 3 5 5 H 1.08005 * 119.99919 * 119.99389 * 4 2 1 6 6 C 1.37873 * 120.00443 * 300.00473 * 4 2 1 7 7 N 1.31515 * 120.00444 * 179.97438 * 6 4 2 8 8 Si 1.86810 * 119.99722 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47063 * 90.00417 * 8 6 4 10 10 H 1.48494 * 109.47123 * 210.00571 * 8 6 4 11 11 H 1.48498 * 109.46818 * 330.00425 * 8 6 4 12 12 N 1.46502 * 109.46850 * 240.00080 * 2 1 3 13 13 C 1.34779 * 119.99822 * 85.00128 * 12 2 1 14 14 O 1.21276 * 119.99943 * 359.97438 * 13 12 2 15 15 C 1.50693 * 119.99774 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.46979 * 179.97438 * 15 13 12 17 17 H 1.09006 * 109.47078 * 55.00395 * 16 15 13 18 18 O 1.42897 * 109.47059 * 295.00384 * 16 15 13 19 19 C 1.50703 * 109.47127 * 175.00235 * 16 15 13 20 20 C 1.38265 * 119.98460 * 265.00137 * 19 16 15 21 21 C 1.38230 * 120.05232 * 179.97438 * 20 19 16 22 22 C 1.38221 * 120.01866 * 359.97438 * 21 20 19 23 23 C 1.38437 * 119.97771 * 359.97438 * 22 21 20 24 24 F 1.35096 * 120.02231 * 180.02562 * 23 22 21 25 25 C 1.38170 * 119.98887 * 84.97899 * 19 16 15 26 26 H 1.08996 * 109.47071 * 59.99749 * 1 2 3 27 27 H 1.09001 * 109.46547 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46551 * 299.99528 * 1 2 3 29 29 H 0.97003 * 119.99983 * 179.97438 * 7 6 4 30 30 H 0.96994 * 120.00245 * 264.99472 * 12 2 1 31 31 H 1.09003 * 109.47128 * 60.00191 * 15 13 12 32 32 H 1.09000 * 109.47529 * 299.99551 * 15 13 12 33 33 H 0.96699 * 113.99711 * 299.99150 * 18 16 15 34 34 H 1.07998 * 119.98228 * 359.70181 * 20 19 16 35 35 H 1.07993 * 119.98797 * 179.97438 * 21 20 19 36 36 H 1.08010 * 120.00681 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.01158 * 0.04483 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8742 2.6995 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1771 1.4924 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6498 -0.7284 -3.5875 16 6 2.7006 0.2546 -4.7589 17 1 3.3015 1.1205 -4.4808 18 8 1.3749 0.6789 -5.0824 19 6 3.3178 -0.4218 -5.9558 20 6 4.6698 -0.2808 -6.2083 21 6 5.2375 -0.9010 -7.3055 22 6 4.4539 -1.6633 -8.1512 23 6 3.1002 -1.8060 -7.8988 24 9 2.3335 -2.5513 -8.7245 25 6 2.5324 -1.1829 -6.8002 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.9033 -0.5282 4.4376 30 1 2.2491 -1.6317 -1.1527 31 1 1.9776 -1.5507 -3.8325 32 1 3.6492 -1.1202 -3.3980 33 1 0.7833 -0.0414 -5.3398 34 1 5.2822 0.3179 -5.5503 35 1 6.2936 -0.7898 -7.5020 36 1 4.8976 -2.1475 -9.0088 37 1 1.4762 -1.2925 -6.6030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091233767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:42 Heat of formation + Delta-G solvation = -109.248778 kcal Electronic energy + Delta-G solvation = -21338.546876 eV Core-core repulsion = 17802.274796 eV Total energy + Delta-G solvation = -3536.272081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.17531 -40.07137 -38.88280 -36.81240 -34.92058 -32.49087 -32.17604 -30.98516 -30.49632 -29.03376 -25.25008 -24.80710 -22.98917 -21.84992 -20.91071 -19.59840 -18.35443 -17.17520 -16.87125 -16.48606 -16.21290 -15.86597 -15.82148 -15.60770 -15.17177 -14.38189 -14.20982 -13.98443 -13.84300 -13.28312 -13.07002 -12.91166 -12.61559 -12.21810 -12.18624 -12.02195 -11.72035 -11.62104 -11.23215 -11.18132 -10.81829 -10.28563 -10.18754 -9.70480 -9.37321 -9.23114 -9.11764 -8.93210 -8.75935 -8.13639 -6.21716 -4.24295 0.80270 0.85754 3.20590 3.22817 3.25866 3.35574 3.40683 3.76724 3.97421 4.31448 4.34555 4.37078 4.45987 4.70956 4.76108 4.91226 5.00003 5.10871 5.13943 5.41412 5.50705 5.59421 5.64742 5.72926 5.80359 5.97584 6.20368 6.31785 6.39493 6.54222 6.57178 6.87028 7.19623 7.30422 7.52686 7.56009 8.15055 8.53252 8.75384 8.96089 9.39551 10.90440 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035731 B = 0.003277 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.438859 B = 8542.945666 C = 8687.695738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.237 3.763 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.541 6.541 15 C -0.172 4.172 16 C 0.166 3.834 17 H 0.120 0.880 18 O -0.535 6.535 19 C -0.083 4.083 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.100 3.900 24 F -0.140 7.140 25 C -0.147 4.147 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.366 0.634 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -2.942 -21.827 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.419 6.419 15 C -0.213 4.213 16 C 0.106 3.894 17 H 0.137 0.863 18 O -0.339 6.339 19 C -0.084 4.084 20 C -0.138 4.138 21 C -0.106 4.106 22 C -0.176 4.176 23 C 0.081 3.919 24 F -0.119 7.119 25 C -0.166 4.166 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.154 -1.537 -21.516 21.968 hybrid contribution -0.791 -0.641 0.008 1.018 sum 3.363 -2.178 -21.509 21.879 Atomic orbital electron populations 1.22444 0.99371 1.00753 0.99334 1.19079 0.90104 0.94648 0.82837 0.93425 1.21054 1.33259 1.14410 0.88608 0.90257 1.24838 0.95491 0.96725 0.95526 1.69871 1.44966 1.40128 0.98051 0.86867 0.80517 0.83608 0.77447 1.20316 1.22166 1.18618 1.46199 1.65483 1.13783 1.09834 1.20238 0.78913 0.87624 0.84507 1.90701 1.50447 1.15870 1.84867 1.22450 1.04213 0.99805 0.94832 1.20576 0.84583 0.96477 0.87804 0.86258 1.86796 1.20607 1.36931 1.89565 1.20585 0.94302 0.96476 0.96988 1.21139 0.94320 1.00301 0.98001 1.21034 1.00092 0.95619 0.93807 1.21176 0.92218 1.02240 1.02005 1.17645 0.89262 0.94539 0.90423 1.91507 1.75352 1.74289 1.70741 1.20872 1.01127 0.99467 0.95128 0.94468 0.92927 0.93525 0.92288 0.77298 0.88872 0.88056 0.78704 0.84815 0.84761 0.84775 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.97 37.16 0.33 -3.28 16 2 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 4 C -0.54 -14.41 9.31 -34.44 -0.32 -14.73 16 5 H 0.08 2.23 7.98 -52.48 -0.42 1.82 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 8 Si 0.89 21.84 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.70 -13.55 5.07 -54.93 -0.28 -13.83 16 13 C 0.50 8.98 7.67 -10.99 -0.08 8.89 16 14 O -0.54 -11.91 15.08 -8.85 -0.13 -12.05 16 15 C -0.17 -2.07 5.36 -27.88 -0.15 -2.22 16 16 C 0.17 1.96 2.76 -27.88 -0.08 1.89 16 17 H 0.12 1.56 7.86 -51.93 -0.41 1.15 16 18 O -0.53 -7.17 12.37 -49.64 -0.61 -7.78 16 19 C -0.08 -0.81 5.00 -104.64 -0.52 -1.34 16 20 C -0.12 -1.02 9.68 -39.57 -0.38 -1.41 16 21 C -0.09 -0.65 10.04 -39.59 -0.40 -1.05 16 22 C -0.16 -1.29 10.03 -39.51 -0.40 -1.69 16 23 C 0.10 0.97 7.30 -39.42 -0.29 0.69 16 24 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 25 C -0.15 -1.39 9.31 -39.52 -0.37 -1.76 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 30 H 0.39 6.60 8.54 -40.82 -0.35 6.25 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.37 3.49 7.39 45.56 0.34 3.83 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.06 6.61 -52.49 -0.35 0.72 16 LS Contribution 315.00 15.07 4.75 4.75 Total: -1.00 -33.44 315.00 -6.35 -39.79 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.84 Total: 6.94 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.90 Total: -8.45 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.50 Total: -39.47 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.75 Total: -19.83 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.44 -6.35 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091233767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.458 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds