Wall clock time and date at job start Tue Mar 31 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46927 * 90.00469 * 8 6 4 10 10 H 1.48504 * 109.47102 * 210.00293 * 8 6 4 11 11 H 1.48497 * 109.47275 * 330.00418 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.52999 * 109.47004 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47649 * 305.00018 * 16 15 13 18 18 O 1.42904 * 109.47035 * 64.99728 * 16 15 13 19 19 C 1.50696 * 109.47477 * 184.99476 * 16 15 13 20 20 C 1.38263 * 119.99017 * 279.73026 * 19 16 15 21 21 C 1.38228 * 120.05305 * 179.72487 * 20 19 16 22 22 C 1.38226 * 120.02473 * 0.54120 * 21 20 19 23 23 C 1.38440 * 119.96954 * 359.73011 * 22 21 20 24 24 F 1.35105 * 120.02312 * 180.02562 * 23 22 21 25 25 C 1.38178 * 119.98697 * 99.99723 * 19 16 15 26 26 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 31 31 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 32 32 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 33 33 H 0.96701 * 113.99979 * 60.00348 * 18 16 15 34 34 H 1.08000 * 119.97634 * 359.97438 * 20 19 16 35 35 H 1.07999 * 119.99113 * 180.27788 * 21 20 19 36 36 H 1.07995 * 120.01777 * 179.70500 * 22 21 20 37 37 H 1.08006 * 120.01172 * 0.03242 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6303 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8639 1.1598 -2.4102 15 6 2.6607 -0.7259 -3.5845 16 6 2.7169 0.2584 -4.7545 17 1 1.7375 0.7168 -4.8912 18 8 3.6834 1.2737 -4.4769 19 6 3.1072 -0.4765 -6.0109 20 6 4.4352 -0.7769 -6.2516 21 6 4.7940 -1.4559 -7.4009 22 6 3.8267 -1.8255 -8.3164 23 6 2.4973 -1.5203 -8.0792 24 9 1.5508 -1.8816 -8.9730 25 6 2.1384 -0.8450 -6.9247 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7081 1.1610 3.4844 30 1 2.2491 -1.6318 -1.1525 31 1 3.6591 -1.1180 -3.3909 32 1 1.9895 -1.5478 -3.8336 33 1 4.5802 0.9372 -4.3438 34 1 5.1923 -0.4843 -5.5392 35 1 5.8311 -1.6940 -7.5857 36 1 4.1077 -2.3518 -9.2166 37 1 1.1017 -0.6060 -6.7389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091233769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:49 Heat of formation + Delta-G solvation = -117.587273 kcal Electronic energy + Delta-G solvation = -21238.567872 eV Core-core repulsion = 17701.934207 eV Total energy + Delta-G solvation = -3536.633665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.13326 -39.99947 -38.71659 -36.67907 -34.70180 -32.47949 -32.21117 -30.78300 -30.13081 -28.41798 -25.26856 -24.69665 -23.08616 -21.70468 -20.80541 -19.39709 -18.21774 -17.13348 -16.72966 -16.47956 -16.07509 -15.82443 -15.70384 -15.26623 -15.08945 -14.39492 -14.13470 -13.87265 -13.65754 -13.19858 -13.04903 -12.56075 -12.38577 -12.16158 -11.86557 -11.82218 -11.51727 -11.08402 -11.07181 -10.95968 -10.72156 -10.31482 -10.23842 -10.18340 -9.31745 -9.05822 -9.04086 -8.85842 -8.54153 -7.88099 -6.12214 -4.21674 0.83033 0.89489 3.23880 3.24203 3.30590 3.32257 3.42773 3.83718 4.06659 4.32442 4.40601 4.51323 4.54102 4.74327 4.81621 4.92543 5.10408 5.16224 5.20528 5.46879 5.58279 5.66411 5.75087 5.78584 5.83629 5.99980 6.25883 6.57427 6.83295 6.97356 7.16375 7.48398 7.57226 7.65374 7.69978 7.92545 8.15990 8.68572 8.79068 9.16436 9.46247 10.93750 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032901 B = 0.003124 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.833576 B = 8959.804350 C = 9076.608980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.540 6.540 15 C -0.173 4.173 16 C 0.166 3.834 17 H 0.117 0.883 18 O -0.533 6.533 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.100 3.900 24 F -0.140 7.140 25 C -0.143 4.143 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.366 0.634 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -7.061 -18.874 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.361 5.361 13 C 0.284 3.716 14 O -0.418 6.418 15 C -0.213 4.213 16 C 0.106 3.894 17 H 0.134 0.866 18 O -0.337 6.337 19 C -0.083 4.083 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.177 4.177 23 C 0.080 3.920 24 F -0.119 7.119 25 C -0.162 4.162 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.213 0.787 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.782 -5.700 -18.822 20.499 hybrid contribution 0.687 -1.554 0.727 1.848 sum 6.470 -7.254 -18.095 20.540 Atomic orbital electron populations 1.22074 0.98563 0.99017 1.00880 1.18721 0.90966 0.94002 0.80055 0.93376 1.21227 1.32433 1.13205 0.90401 0.92145 1.24897 0.94817 0.94972 0.99071 1.69905 1.35796 1.22487 1.23874 0.86449 0.78615 0.79805 0.82222 1.20559 1.21070 1.19874 1.46532 1.65404 1.13390 1.10731 1.20181 0.79213 0.87597 0.84590 1.90706 1.50501 1.15686 1.84858 1.22459 1.03822 0.99982 0.95064 1.20543 0.94281 0.87213 0.87404 0.86567 1.86812 1.20009 1.33756 1.93094 1.20599 0.93457 0.97356 0.96841 1.21007 0.95706 0.99244 0.98151 1.20987 0.99398 0.96883 0.93272 1.21164 0.91373 1.03495 1.01644 1.17692 0.86087 0.99551 0.88626 1.91509 1.63909 1.89830 1.66634 1.21036 1.01118 1.00683 0.93377 0.89185 0.96687 0.95553 0.92570 0.78096 0.88959 0.88486 0.78710 0.85249 0.84842 0.84805 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 N -0.71 -14.50 5.07 -54.93 -0.28 -14.77 16 13 C 0.50 9.56 7.68 -10.99 -0.08 9.48 16 14 O -0.54 -12.77 15.08 -8.87 -0.13 -12.90 16 15 C -0.17 -2.21 5.36 -27.88 -0.15 -2.36 16 16 C 0.17 2.10 2.75 -27.89 -0.08 2.03 16 17 H 0.12 1.66 7.82 -51.93 -0.41 1.25 16 18 O -0.53 -7.54 12.42 -49.66 -0.62 -8.16 16 19 C -0.08 -0.85 4.97 -104.64 -0.52 -1.37 16 20 C -0.12 -1.05 9.32 -39.58 -0.37 -1.42 16 21 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 22 C -0.16 -1.34 10.03 -39.51 -0.40 -1.73 16 23 C 0.10 1.02 7.30 -39.42 -0.29 0.73 16 24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 25 C -0.14 -1.49 9.65 -39.51 -0.38 -1.88 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.37 3.64 7.49 45.56 0.34 3.98 16 34 H 0.13 0.84 6.77 -52.49 -0.36 0.48 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.33 8.04 -52.48 -0.42 0.90 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -32.72 322.01 -7.40 -40.12 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.98 Total: 8.29 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.89 Total: -7.11 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.35 Total: -39.12 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.75 Total: -21.06 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.72 -7.40 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091233769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.466 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds