Wall clock time and date at job start Tue Mar 31 2020 06:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.53011 * 109.46963 * 180.02562 * 15 13 12 17 17 H 1.08994 * 109.47067 * 304.99785 * 16 15 13 18 18 O 1.42893 * 109.46951 * 64.99685 * 16 15 13 19 19 C 1.50702 * 109.46560 * 184.99594 * 16 15 13 20 20 C 1.38268 * 119.98819 * 279.72241 * 19 16 15 21 21 C 1.38217 * 120.04710 * 179.73219 * 20 19 16 22 22 C 1.38215 * 120.03084 * 0.54734 * 21 20 19 23 23 C 1.38439 * 119.97212 * 359.72525 * 22 21 20 24 24 F 1.35102 * 120.02706 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98508 * 100.00222 * 19 16 15 26 26 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 28 28 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 31 31 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 32 32 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 33 33 H 0.96706 * 114.00581 * 60.00205 * 18 16 15 34 34 H 1.08002 * 119.97300 * 359.97438 * 20 19 16 35 35 H 1.08009 * 119.98582 * 180.27743 * 21 20 19 36 36 H 1.07999 * 120.01767 * 179.70638 * 22 21 20 37 37 H 1.08000 * 120.01088 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.7004 0.2547 4.7590 17 1 3.3013 1.1205 4.4809 18 8 1.3748 0.6791 5.0824 19 6 3.3175 -0.4217 5.9559 20 6 2.5535 -1.2613 6.7454 21 6 3.1197 -1.8866 7.8403 22 6 4.4474 -1.6646 8.1538 23 6 5.2118 -0.8198 7.3674 24 9 6.5098 -0.6023 7.6725 25 6 4.6450 -0.1981 6.2674 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7173 1.1669 -3.4844 30 1 2.2490 -1.6317 1.1528 31 1 1.9772 -1.5505 3.8327 32 1 3.6488 -1.1203 3.3982 33 1 0.7830 -0.0411 5.3398 34 1 1.5147 -1.4316 6.5041 35 1 2.5232 -2.5458 8.4537 36 1 4.8883 -2.1496 9.0122 37 1 5.2402 0.4616 5.6534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091233770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:53 Heat of formation + Delta-G solvation = -117.637622 kcal Electronic energy + Delta-G solvation = -21242.624971 eV Core-core repulsion = 17705.989123 eV Total energy + Delta-G solvation = -3536.635848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.12924 -40.00102 -38.71723 -36.68458 -34.70212 -32.48016 -32.21284 -30.78328 -30.13107 -28.41422 -25.26995 -24.69812 -23.08543 -21.70629 -20.80158 -19.39831 -18.21954 -17.14518 -16.71371 -16.47914 -16.07624 -15.82045 -15.69171 -15.35544 -15.03914 -14.38304 -14.04681 -13.83817 -13.79554 -13.20374 -13.02563 -12.54111 -12.37056 -12.20792 -11.85547 -11.82138 -11.51549 -11.09633 -11.07570 -10.94163 -10.70762 -10.31517 -10.24354 -10.18824 -9.31600 -9.05314 -9.02899 -8.85863 -8.54994 -7.87977 -6.12406 -4.21826 0.83084 0.89665 3.23071 3.24178 3.30913 3.33409 3.42753 3.83930 4.06660 4.32435 4.40544 4.51239 4.53584 4.74382 4.81512 4.92377 5.10504 5.16641 5.19851 5.46949 5.58892 5.66110 5.75309 5.78794 5.83749 5.99810 6.25923 6.57563 6.83704 6.98381 7.16739 7.48600 7.57367 7.64314 7.70022 7.92685 8.15964 8.68600 8.79191 9.16441 9.46242 10.93582 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.003221 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.367181 B = 8692.155179 C = 9145.921206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.540 6.540 15 C -0.173 4.173 16 C 0.165 3.835 17 H 0.117 0.883 18 O -0.533 6.533 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.100 3.900 24 F -0.140 7.140 25 C -0.143 4.143 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.089 0.911 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.366 0.634 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -7.607 19.447 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.361 5.361 13 C 0.284 3.716 14 O -0.418 6.418 15 C -0.213 4.213 16 C 0.106 3.894 17 H 0.135 0.865 18 O -0.337 6.337 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.106 4.106 22 C -0.177 4.177 23 C 0.081 3.919 24 F -0.119 7.119 25 C -0.162 4.162 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.212 0.788 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.552 -6.022 19.169 20.602 hybrid contribution 0.536 -1.583 -0.696 1.810 sum 5.088 -7.605 18.474 20.616 Atomic orbital electron populations 1.22068 0.98521 0.98993 1.00920 1.18725 0.91009 0.93963 0.80054 0.93430 1.21266 1.32437 1.13114 0.90391 0.92080 1.24897 0.94844 0.94953 0.99081 1.69915 1.35963 1.22413 1.23764 0.86401 0.78620 0.79501 0.82604 1.19762 1.20874 1.20872 1.46532 1.65456 1.13480 1.10590 1.20181 0.79191 0.87698 0.84514 1.90707 1.50421 1.15827 1.84804 1.22459 1.03932 0.99754 0.95172 1.20549 0.84600 0.96533 0.87768 0.86520 1.86811 1.20454 1.36821 1.89577 1.20598 0.93512 0.96587 0.97549 1.20998 1.00334 0.97205 0.95598 1.20979 0.94063 0.98735 0.96777 1.21161 0.95082 1.00337 1.01100 1.17694 0.78817 0.99043 0.96373 1.91509 1.34050 1.93561 1.92746 1.21043 0.95800 1.01954 0.97398 0.95585 0.96570 0.89244 0.92627 0.78095 0.89031 0.88416 0.78773 0.85280 0.84854 0.84805 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.72 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.12 8.72 -34.44 -0.30 -14.43 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 7 N -0.88 -24.97 11.33 55.43 0.63 -24.34 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.71 -14.49 5.07 -54.93 -0.28 -14.77 16 13 C 0.50 9.56 7.67 -10.99 -0.08 9.47 16 14 O -0.54 -12.76 15.08 -8.83 -0.13 -12.89 16 15 C -0.17 -2.21 5.36 -27.88 -0.15 -2.36 16 16 C 0.17 2.10 2.76 -27.88 -0.08 2.02 16 17 H 0.12 1.68 7.81 -51.93 -0.41 1.27 16 18 O -0.53 -7.45 12.42 -49.62 -0.62 -8.07 16 19 C -0.08 -0.85 4.97 -104.63 -0.52 -1.37 16 20 C -0.12 -1.04 9.32 -39.58 -0.37 -1.41 16 21 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 22 C -0.16 -1.34 10.03 -39.52 -0.40 -1.74 16 23 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 24 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 25 C -0.14 -1.50 9.65 -39.52 -0.38 -1.89 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 2.43 6.08 -51.93 -0.32 2.12 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.09 8.14 -51.94 -0.42 0.67 16 33 H 0.37 3.55 7.50 45.56 0.34 3.89 16 34 H 0.13 0.82 6.77 -52.49 -0.36 0.46 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.14 1.35 8.04 -52.49 -0.42 0.93 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -32.75 322.03 -7.40 -40.15 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.98 Total: 8.13 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.89 Total: -7.11 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.35 Total: -39.11 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.75 Total: -20.97 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.75 -7.40 -40.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091233770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.489 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds