Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46859 * 2 1 4 4 N 1.46497 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00168 * 269.64057 * 4 3 2 6 6 H 1.07999 * 119.99586 * 322.02404 * 5 4 3 7 7 C 1.38807 * 120.00324 * 142.02211 * 5 4 3 8 8 N 1.31622 * 120.00175 * 157.09531 * 7 5 4 9 9 Si 1.86803 * 120.00031 * 337.09817 * 7 5 4 10 10 H 1.48497 * 109.47167 * 95.69515 * 9 7 5 11 11 H 1.48499 * 109.46981 * 215.69554 * 9 7 5 12 12 H 1.48505 * 109.46783 * 335.69642 * 9 7 5 13 13 C 1.46500 * 120.00054 * 89.64311 * 4 3 2 14 14 C 1.50699 * 109.47428 * 89.99676 * 13 4 3 15 15 C 1.38242 * 119.99746 * 89.99977 * 14 13 4 16 16 C 1.38235 * 119.99813 * 179.72810 * 15 14 13 17 17 C 1.38237 * 119.99780 * 0.27512 * 16 15 14 18 18 S 1.76202 * 119.99700 * 179.97438 * 17 16 15 19 19 C 1.81405 * 103.00191 * 90.00089 * 18 17 16 20 20 O 1.42099 * 102.99885 * 336.14710 * 18 17 16 21 21 C 1.38226 * 120.00183 * 359.97438 * 17 16 15 22 22 C 1.38231 * 120.00461 * 359.95700 * 21 17 16 23 23 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46879 * 299.99948 * 1 2 3 25 25 H 1.09003 * 109.47261 * 60.00139 * 1 2 3 26 26 H 1.09001 * 109.47158 * 240.00525 * 2 1 3 27 27 H 1.08994 * 109.46985 * 119.99879 * 2 1 3 28 28 H 1.09000 * 109.47349 * 59.99773 * 3 2 1 29 29 H 1.09003 * 109.47070 * 299.99978 * 3 2 1 30 30 H 0.96995 * 119.99983 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47116 * 329.99639 * 13 4 3 32 32 H 1.09005 * 109.47258 * 209.99912 * 13 4 3 33 33 H 1.07995 * 119.99986 * 0.02562 * 15 14 13 34 34 H 1.08003 * 119.99894 * 180.25526 * 16 15 14 35 35 H 1.08997 * 109.46740 * 60.00012 * 19 18 17 36 36 H 1.08995 * 109.46816 * 180.02562 * 19 18 17 37 37 H 1.09006 * 109.46886 * 299.99980 * 19 18 17 38 38 H 1.08004 * 119.99976 * 179.97438 * 21 17 16 39 39 H 1.07995 * 120.00670 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4499 1.1849 6 1 3.8220 2.0305 2.0178 7 6 5.3579 0.7110 1.3163 8 7 6.2446 1.0387 2.2322 9 14 5.6710 -0.7485 0.1931 10 1 6.5093 -0.3187 -0.9548 11 1 6.3768 -1.8133 0.9503 12 1 4.3758 -1.2735 -0.3089 13 6 4.2370 1.4349 -1.2696 14 6 4.4879 2.8530 -1.7135 15 6 5.6400 3.5071 -1.3189 16 6 5.8729 4.8060 -1.7307 17 6 4.9509 5.4527 -2.5323 18 16 5.2474 7.1086 -3.0566 19 6 6.1443 6.8879 -4.6180 20 8 6.1371 7.6033 -2.0652 21 6 3.7964 4.8004 -2.9226 22 6 3.5642 3.5010 -2.5121 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 7.0603 0.5221 2.3242 31 1 3.6476 0.9164 -2.0259 32 1 5.1895 0.9219 -1.1366 33 1 6.3605 3.0017 -0.6929 34 1 6.7750 5.3156 -1.4258 35 1 5.5219 6.3316 -5.3189 36 1 6.3844 7.8637 -5.0400 37 1 7.0657 6.3357 -4.4327 38 1 3.0759 5.3058 -3.5486 39 1 2.6624 2.9912 -2.8173 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = 3.808926 kcal Electronic energy + Delta-G solvation = -19958.687469 eV Core-core repulsion = 16993.531114 eV Total energy + Delta-G solvation = -2965.156355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -38.87119 -36.34283 -35.58294 -33.11517 -31.90382 -30.50385 -30.37692 -28.81069 -26.29726 -25.63316 -22.40354 -22.22668 -21.31181 -19.91562 -17.85884 -17.05386 -16.30070 -15.58423 -14.92464 -14.78845 -14.71848 -14.40902 -14.09345 -13.80305 -13.54863 -13.11790 -13.01713 -12.77194 -12.60541 -12.44953 -12.10850 -12.06149 -11.68464 -11.32592 -11.24896 -10.84633 -10.79275 -10.73905 -10.49262 -10.10086 -9.94392 -9.92703 -9.64309 -8.65819 -8.60020 -8.47818 -8.18108 -6.94248 -6.08286 -3.48242 1.26540 1.85758 2.08552 2.83284 3.22961 3.40394 3.44632 3.92571 4.18601 4.43954 5.04209 5.12495 5.17235 5.21640 5.23275 5.34317 5.52687 5.57133 5.69343 5.80846 5.89207 5.89616 5.93753 6.07766 6.10846 6.24560 6.34578 6.40425 6.45983 6.49753 6.56029 6.65927 6.81203 6.83596 7.02245 7.21427 7.44004 7.96107 8.32283 8.88464 9.61419 10.01669 11.06671 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018691 B = 0.005217 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.669291 B = 5365.281698 C = 6222.405188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.152 3.848 4 N -0.594 5.594 5 C -0.266 4.266 6 H 0.079 0.921 7 C 0.039 3.961 8 N -0.892 5.892 9 Si 0.869 3.131 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.264 1.264 13 C 0.161 3.839 14 C -0.040 4.040 15 C -0.108 4.108 16 C -0.054 4.054 17 C -0.477 4.477 18 S 1.326 4.674 19 C -0.500 4.500 20 O -0.862 6.862 21 C -0.053 4.053 22 C -0.137 4.137 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 7.220 -14.956 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.026 3.974 4 N -0.314 5.314 5 C -0.394 4.394 6 H 0.096 0.904 7 C -0.162 4.162 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.188 1.188 13 C 0.036 3.964 14 C -0.043 4.043 15 C -0.128 4.128 16 C -0.074 4.074 17 C -0.575 4.575 18 S 1.524 4.476 19 C -0.656 4.656 20 O -0.858 6.858 21 C -0.072 4.072 22 C -0.157 4.157 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.531 8.020 -14.374 18.539 hybrid contribution 2.303 -2.302 -0.171 3.261 sum -6.228 5.718 -14.545 16.824 Atomic orbital electron populations 1.21726 0.97082 1.00575 1.01055 1.22133 0.93897 1.00634 1.01903 1.20957 0.83590 0.93585 0.99245 1.44117 1.00593 1.85421 1.01297 1.18770 1.06210 1.23866 0.90566 0.90385 1.25468 0.96751 0.97591 0.96413 1.69892 1.08319 1.39026 1.35960 0.87059 0.78298 0.84726 0.80085 1.21390 1.22731 1.18840 1.20382 0.97336 0.90078 0.88626 1.21174 0.92379 0.99468 0.91319 1.21253 0.98159 0.94558 0.98861 1.21033 0.97833 0.94277 0.94218 1.27211 1.01976 1.17405 1.10913 1.69130 1.08678 0.84274 0.85534 1.27792 1.11425 1.07401 1.18968 1.93103 1.67754 1.72200 1.52756 1.20634 0.94876 0.94193 0.97509 1.21073 0.99403 0.95208 1.00045 0.93703 0.93034 0.93457 0.93270 0.91707 0.92952 0.94294 0.92590 0.92990 0.91945 0.85552 0.86370 0.87360 0.88179 0.90217 0.85540 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.15 -2.56 6.26 -26.73 -0.17 -2.72 16 3 C 0.15 2.89 5.67 -4.04 -0.02 2.87 16 4 N -0.59 -13.57 2.05 -174.61 -0.36 -13.92 16 5 C -0.27 -7.22 9.90 -15.06 -0.15 -7.37 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 8 N -0.89 -26.80 13.97 55.49 0.78 -26.03 16 9 Si 0.87 21.58 25.10 -169.99 -4.27 17.32 16 10 H -0.29 -6.94 6.68 56.52 0.38 -6.57 16 11 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.16 3.40 4.64 -5.19 -0.02 3.37 16 14 C -0.04 -0.78 5.46 -104.62 -0.57 -1.35 16 15 C -0.11 -2.27 9.70 -39.58 -0.38 -2.65 16 16 C -0.05 -1.03 9.44 -39.58 -0.37 -1.40 16 17 C -0.48 -7.14 5.61 -39.59 -0.22 -7.36 16 18 S 1.33 14.68 14.19 -107.50 -1.53 13.16 16 19 C -0.50 -4.67 10.70 101.05 1.08 -3.59 16 20 O -0.86 -15.66 16.90 -35.23 -0.60 -16.26 16 21 C -0.05 -0.69 9.75 -39.59 -0.39 -1.08 16 22 C -0.14 -2.16 9.70 -39.58 -0.38 -2.54 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 29 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.05 0.96 8.02 -51.93 -0.42 0.55 16 32 H 0.06 1.45 3.32 -51.93 -0.17 1.28 16 33 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 34 H 0.12 2.32 7.45 -52.48 -0.39 1.93 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -35.53 335.71 -8.29 -43.82 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.05 Total: 1.32 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.33 Total: -24.46 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.42 Total: -39.95 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.60 Total: -16.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.27 Total: 17.32 kcal Atomic # 16 Polarization: 14.68 SS G_CDS: -1.53 Total: 13.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.53 -8.29 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.625 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds