Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.50493 * 2 1 4 4 C 1.53097 * 109.50972 * 239.91985 * 2 1 3 5 5 N 1.47017 * 109.26114 * 183.21616 * 4 2 1 6 6 C 1.46899 * 110.99979 * 182.38895 * 5 4 2 7 7 C 1.52997 * 109.47254 * 66.04540 * 6 5 4 8 8 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99890 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00428 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99563 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00432 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46838 * 89.99826 * 12 10 8 14 14 H 1.48497 * 109.47419 * 209.99978 * 12 10 8 15 15 H 1.48499 * 109.47011 * 330.00539 * 12 10 8 16 16 C 1.47007 * 110.75168 * 58.61128 * 5 4 2 17 17 C 1.53098 * 109.26159 * 301.38574 * 16 5 4 18 18 H 1.09000 * 109.50422 * 296.91338 * 17 16 5 19 19 C 1.50695 * 109.54558 * 176.80613 * 17 16 5 20 20 C 1.38428 * 122.54011 * 100.19202 * 19 17 16 21 21 C 1.33385 * 114.91946 * 179.97438 * 20 19 17 22 22 S 1.75890 * 109.59539 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.53999 * 279.90658 * 19 17 16 24 24 O 1.43011 * 109.25600 * 56.84932 * 17 16 5 25 25 H 1.08996 * 109.46505 * 180.08250 * 1 2 3 26 26 H 1.08997 * 109.47141 * 300.08472 * 1 2 3 27 27 H 1.09000 * 109.47114 * 60.08433 * 1 2 3 28 28 H 1.09000 * 109.50755 * 63.27864 * 4 2 1 29 29 H 1.09007 * 109.50387 * 303.15044 * 4 2 1 30 30 H 1.09002 * 109.47043 * 186.04611 * 6 5 4 31 31 H 1.09001 * 109.47354 * 306.04673 * 6 5 4 32 32 H 1.09002 * 109.47153 * 300.00004 * 7 6 5 33 33 H 1.08998 * 109.47533 * 59.99633 * 7 6 5 34 34 H 0.97002 * 119.99731 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.50639 * 61.32021 * 16 5 4 36 36 H 1.08997 * 109.50784 * 181.45157 * 16 5 4 37 37 H 1.07994 * 122.53917 * 359.95689 * 20 19 17 38 38 H 1.08003 * 125.20136 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.20219 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2487 5 7 3.5094 -0.7878 -1.2048 6 6 4.0447 -1.4257 -2.4150 7 6 3.7555 -0.5403 -3.6287 8 6 4.3052 -1.1944 -4.8701 9 1 4.8100 -2.1466 -4.8004 10 6 4.1627 -0.5778 -6.0950 11 7 3.5475 0.5816 -6.1800 12 14 4.8448 -1.3881 -7.6337 13 1 3.8067 -2.2649 -8.2329 14 1 5.2346 -0.3420 -8.6129 15 1 6.0350 -2.2019 -7.2784 16 6 3.9640 -1.4883 0.0051 17 6 3.4335 -0.7573 1.2413 18 1 3.8535 0.2479 1.2778 19 6 3.8298 -1.5136 2.4830 20 6 4.9038 -1.1391 3.2719 21 6 5.1181 -1.9157 4.3350 22 16 3.9193 -3.2022 4.3769 23 6 3.1689 -2.5914 2.9082 24 8 2.0077 -0.6767 1.1658 25 1 -0.3632 -1.0277 0.0015 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5125 -0.8907 28 1 1.7274 -0.1785 -2.1391 29 1 1.6332 -1.7337 -1.2768 30 1 5.1216 -1.5578 -2.3100 31 1 3.5712 -2.3977 -2.5532 32 1 2.6786 -0.4082 -3.7337 33 1 4.2289 0.4317 -3.4906 34 1 3.4470 1.0152 -7.0418 35 1 3.5867 -2.5109 -0.0029 36 1 5.0536 -1.5019 0.0300 37 1 5.5216 -0.2832 3.0438 38 1 5.9070 -1.7760 5.0593 39 1 2.3064 -3.0243 2.4233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120510813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = -13.294893 kcal Electronic energy + Delta-G solvation = -19837.822075 eV Core-core repulsion = 16871.924043 eV Total energy + Delta-G solvation = -2965.898032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -39.88720 -37.76654 -35.73563 -32.99922 -32.74238 -30.30900 -29.46236 -27.66406 -25.98289 -24.72735 -22.95339 -22.21414 -20.46699 -19.89363 -18.82479 -17.71874 -16.62818 -16.33337 -15.76268 -15.12873 -14.86283 -14.63250 -14.28746 -13.83376 -13.40399 -13.02747 -12.93931 -12.79887 -12.52702 -12.39561 -12.15603 -12.11322 -11.74606 -11.43726 -11.23356 -11.01902 -10.91609 -10.81656 -10.56388 -10.31852 -9.91063 -9.60927 -9.27059 -9.15714 -8.87850 -8.48411 -8.35174 -7.83318 -6.01735 -4.04191 0.90903 1.54246 1.86056 2.53463 3.30792 3.37159 3.40476 3.76156 4.27081 4.49070 4.85052 4.97367 5.07057 5.17885 5.26653 5.27815 5.34316 5.37395 5.51192 5.56807 5.63516 5.76085 5.85348 5.89820 6.04065 6.07534 6.16209 6.24152 6.28575 6.31216 6.42766 6.45577 6.91308 7.32729 7.39493 7.48038 7.74129 7.85263 8.04197 8.40663 9.02685 9.59589 11.09615 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024740 B = 0.003592 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.477544 B = 7793.966362 C = 8528.488265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.024 3.976 5 N -0.537 5.537 6 C 0.064 3.936 7 C 0.029 3.971 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.031 3.969 17 C 0.157 3.843 18 H 0.075 0.925 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.215 4.215 22 S 0.082 5.918 23 C -0.178 4.178 24 O -0.380 6.380 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.017 0.983 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -3.749 20.323 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.104 4.104 5 N -0.262 5.262 6 C -0.063 4.063 7 C -0.009 4.009 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.098 4.098 17 C 0.097 3.903 18 H 0.093 0.907 19 C -0.111 4.111 20 C -0.151 4.151 21 C -0.350 4.350 22 S 0.345 5.655 23 C -0.313 4.313 24 O -0.300 6.300 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.161 0.839 38 H 0.182 0.818 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.840 -4.444 21.337 21.873 hybrid contribution 0.548 -0.003 -2.124 2.194 sum -1.291 -4.447 19.213 19.763 Atomic orbital electron populations 1.21727 0.92993 1.02717 1.02490 1.22205 0.94517 0.95790 0.84265 0.91517 1.22836 0.88607 0.99835 0.99153 1.62321 1.08405 1.52999 1.02465 1.22363 0.98427 0.96205 0.89286 1.19091 0.97061 0.95141 0.89578 1.21179 1.37004 1.05857 0.92108 0.92802 1.24988 0.95328 0.94903 0.99049 1.69970 1.42638 1.15703 1.24891 0.86592 0.79353 0.79072 0.82971 1.20701 1.21168 1.19875 1.22699 1.00903 0.95785 0.90379 1.20509 0.81872 0.97674 0.90287 0.90748 1.18680 0.97184 0.97051 0.98231 1.20020 0.98654 1.01689 0.94734 1.25508 1.05067 1.00502 1.03943 1.84228 1.25165 1.30813 1.25278 1.25479 1.05012 1.00818 1.00018 1.87923 1.20010 1.78725 1.43334 0.92100 0.91959 0.90651 0.88510 0.94641 0.91915 0.96090 0.96506 0.95661 0.92975 0.94562 0.89975 0.83925 0.81808 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 37.16 0.36 -1.35 16 2 C 0.09 1.31 3.43 -26.68 -0.09 1.22 16 3 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 4 C 0.02 0.41 4.72 -3.71 -0.02 0.39 16 5 N -0.54 -9.91 4.73 -234.31 -1.11 -11.02 16 6 C 0.06 1.36 4.89 -3.83 -0.02 1.34 16 7 C 0.03 0.74 4.90 -27.89 -0.14 0.60 16 8 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 16 C 0.03 0.49 4.91 -3.71 -0.02 0.47 16 17 C 0.16 2.22 3.10 -27.83 -0.09 2.13 16 18 H 0.07 1.04 8.09 -51.93 -0.42 0.63 16 19 C -0.10 -1.24 4.89 -106.25 -0.52 -1.76 16 20 C -0.12 -1.30 9.95 -41.21 -0.41 -1.71 16 21 C -0.22 -2.05 11.23 29.04 0.33 -1.72 16 22 S 0.08 0.81 23.34 -107.50 -2.51 -1.70 16 23 C -0.18 -2.12 10.56 29.04 0.31 -1.81 16 24 O -0.38 -5.68 9.71 -35.23 -0.34 -6.03 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 1.81 6.37 -51.93 -0.33 1.48 16 29 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 31 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.02 0.45 6.51 -51.93 -0.34 0.11 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.17 1.94 8.05 -52.49 -0.42 1.52 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -30.23 331.07 -10.09 -40.33 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.12 Total: -1.50 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.72 Total: -15.69 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.37 Total: -36.97 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.34 Total: -6.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.23 -10.09 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120510813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.031 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds